Personal tools

NonredundantMotifs:93

From FANTOM5_SSTAR

Revision as of 16:47, 29 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant93
  • db :SWISSREGULON
  • Id :HMGA1,2.p2
  • name :HMGA1,2
  • score :0.21790111807962842
  • External refs:
EntrezGene:HMGA1
UniProt:HMGA1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:HMGA1

EntrezGene:2


Motif matrix
POACGT
1235.84778271.17325126.046643132.90618
2142.284081108.25838497.81561117.615781
353.79223510.2903472.089642329.801639
424.9739727.917489246.146631186.935764
558.205123184.451872144.13737579.1794859999999
6374.09601735.38256115.63584540.859433
7271.2483310.90591239.036638154.782975
871.0536654.3382488.722454381.859489
9016.4886090449.485247
1026.3408592.4253574.649761432.557879
1136.747302176.06530329.468136223.693115
1226.732693195.167230.938174243.135759
1330.27458597.09048800000010.338008338.270775
14106.64096471.919639118.468048168.945205
15181.56082819.57367.598113197.241915

Sub Motif Members