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MCL coexpression mm9:654

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:54140546..54140555,+p@chr11:54140546..54140555
+
Mm9::chr11:83491009..83491013,+p1@ENSMUST00000118318
Mm9::chr14:57870864..57870876,-p@chr14:57870864..57870876
-
Mm9::chr1:108980709..108980716,-p@chr1:108980709..108980716
-
Mm9::chr1:62878785..62878793,-p@chr1:62878785..62878793
-
Mm9::chr2:154839166..154839201,+p7@a
Mm9::chr2:154839293..154839297,+p3@a
Mm9::chr4:144155096..144155104,-p1@Gm13124
Mm9::chr4:144155170..144155177,-p2@Gm13124
Mm9::chr4:86279064..86279069,-p@chr4:86279064..86279069
-
Mm9::chr6:8121358..8121359,-p@chr6:8121358..8121359
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0032402melanosome transport0.00144790288876192
GO:0051904pigment granule transport0.00144790288876192
GO:0032401establishment of melanosome localization0.00144790288876192
GO:0051905establishment of pigment granule localization0.00144790288876192
GO:0032438melanosome organization and biogenesis0.00144790288876192
GO:0032400melanosome localization0.00144790288876192
GO:0048753pigment granule organization and biogenesis0.00144790288876192
GO:0051875pigment granule localization0.00152029803320002
GO:0009755hormone-mediated signaling0.00168922003688891
GO:0033059cellular pigmentation0.00168922003688891
GO:0006582melanin metabolic process0.00168922003688891
GO:0042438melanin biosynthetic process0.00168922003688891
GO:0051650establishment of vesicle localization0.00171520803745644
GO:0051648vesicle localization0.00173748346651431
GO:0009725response to hormone stimulus0.00216220164721781
GO:0051656establishment of organelle localization0.00266052155810004
GO:0046148pigment biosynthetic process0.00304059606640004
GO:0051640organelle localization0.00304059606640004
GO:0042440pigment metabolic process0.00330731501959303
GO:0019748secondary metabolic process0.0043581876951734
GO:0009719response to endogenous stimulus0.0241317148126988
GO:0042221response to chemical stimulus0.0389749132147642



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
zone of skin3.21e-555
skin epidermis3.21e-555
skin of body3.21e-555
integument3.21e-555
surface3.21e-555
outer epithelium3.21e-555
integumental system3.21e-555
enveloping layer of ectoderm3.21e-555
surface structure7.68e-1322


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00322434
MA0004.10.330313
MA0006.10.186435
MA0007.10.316976
MA0009.10.743257
MA0014.10.0633827
MA0017.10.207884
MA0019.11.39291
MA0024.10.70077
MA0025.10.971686
MA0027.12.37948
MA0028.10.194782
MA0029.11.62787
MA0030.10.686088
MA0031.10.651724
MA0038.10.462726
MA0040.10.755433
MA0041.10.729572
MA0042.10.252679
MA0043.10.837621
MA0046.10.778239
MA0048.10.199479
MA0050.10.365212
MA0051.10.471092
MA0052.10.76328
MA0055.10.479469
MA0056.10
MA0057.10.048013
MA0058.10.246908
MA0059.10.257372
MA0060.10.12537
MA0061.10.147394
MA0063.10
MA0066.10.452472
MA0067.11.08124
MA0068.10.0500842
MA0069.10.76361
MA0070.11.78222
MA0071.10.955636
MA0072.10.745922
MA0073.10.000531005
MA0074.10.419185
MA0076.10.223625
MA0077.10.724865
MA0078.10.502121
MA0081.10.277253
MA0083.10.836845
MA0084.11.4063
MA0087.10.794721
MA0088.10.28966
MA0089.10
MA0090.11.47362
MA0091.14.38363
MA0092.10.812369
MA0093.10.20148
MA0095.10
MA0098.10
MA0100.10.408523
MA0101.10.265031
MA0103.10.619698
MA0105.10.0759118
MA0106.10.509454
MA0107.10.211681
MA0108.20.589413
MA0109.10
MA0111.10.312463
MA0113.11.21288
MA0114.10.145642
MA0115.10.84036
MA0116.10.186271
MA0117.10.808813
MA0119.10.265536
MA0122.10.828211
MA0124.11.02871
MA0125.10.955734
MA0130.10
MA0131.10.563262
MA0132.10
MA0133.10
MA0135.10.873285
MA0136.10.437601
MA0139.10.103495
MA0140.11.05203
MA0141.10.233109
MA0142.10.63775
MA0143.10.49828
MA0144.10.147954
MA0145.10.3137
MA0146.10.0276106
MA0147.10.157258
MA0148.10.912216
MA0149.10.269772
MA0062.20.0791588
MA0035.20.412747
MA0039.20.00103637
MA0138.20.555696
MA0002.20.699393
MA0137.20.230686
MA0104.20.11535
MA0047.20.46201
MA0112.20.57262
MA0065.20.314773
MA0150.10.316876
MA0151.10
MA0152.10.46211
MA0153.10.889592
MA0154.13.377
MA0155.10.154271
MA0156.10.222905
MA0157.10.606944
MA0158.10
MA0159.10.165031
MA0160.10.347545
MA0161.10
MA0162.10.00661648
MA0163.10.00559554
MA0164.11.11611
MA0080.20.212408
MA0018.20.446948
MA0099.20.549696
MA0079.26.52293e-09
MA0102.21.45844
MA0258.10.135621
MA0259.10.14914
MA0442.10