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UBERON:0006331

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Name:brainstem nucleus
Namespace:FANTOM
Xrefs:
links:
MA:0000821

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002308(nucleus of brain)
part_of:UBERON:0002298(brainstem)



Children

is a:UBERON:0002148 (locus ceruleus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006331 (brainstem nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr2:237146889..237146895,-#_b0cf0e34aaac375f65f76ab8a3bab514p@chr2:237146889..237146895, -
3.29e-195FFCP PHASE2:Hg19::chr2:237146889..237146895,-#_b0cf0e34aaac375f65f76ab8a3bab514p@chr2:237146889..237146895, -
4.22e-98FFCP PHASE1:Hg19::chr16:49601912..49601949,-#_27aac67bfad99527244ce5d33900ea9dp@chr16:49601912..49601949, -
4.22e-98FFCP PHASE2:Hg19::chr16:49601912..49601949,-#_27aac67bfad99527244ce5d33900ea9dp@chr16:49601912..49601949, -
1.16e-78FFCP PHASE2:Hg19::chr2:108602711..108602722,+#_250fdf588da96d6895bff89124f861d0p3@SLC5A7
1.16e-78FFCP PHASE1:Hg19::chr2:108602711..108602722,+#_250fdf588da96d6895bff89124f861d0p3@SLC5A7
2.84e-66FFCP PHASE2:Hg19::chr17:7559346..7559354,+#_d1cab972af0070d1b112b00c32cf9f80p@chr17:7559346..7559354, +
2.84e-66FFCP PHASE1:Hg19::chr17:7559346..7559354,+#_d1cab972af0070d1b112b00c32cf9f80p@chr17:7559346..7559354, +
3.58e-57FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_fc70287398441082404a5a90848b1812p@chr2:234077664..234077672, +
3.58e-57FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_fc70287398441082404a5a90848b1812p@chr2:234077664..234077672, +
6.36e-57FFCP PHASE1:Hg19::chr9:87427873..87427884,+#_6687618de7884475f215138992617ad7p67@NTRK2
6.36e-57FFCP PHASE2:Hg19::chr9:87427873..87427884,+#_6687618de7884475f215138992617ad7p67@NTRK2
8.47e-57FFCP PHASE1:Hg19::chr5:75379091..75379100,+#_05e9a4c01e3d53996064aa0836bf642dp6@SV2C
8.47e-57FFCP PHASE1:Hg19::chr11:30751827..30751838,+#_05e9a4c01e3d53996064aa0836bf642dp@chr11:30751827..30751838, +
8.47e-57FFCP PHASE2:Hg19::chr11:30751827..30751838,+#_05e9a4c01e3d53996064aa0836bf642dp@chr11:30751827..30751838, +
8.47e-57FFCP PHASE2:Hg19::chr5:75379091..75379100,+#_05e9a4c01e3d53996064aa0836bf642dp6@SV2C
1.13e-56FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_ade46c05811268d5a8ef6dc2dea759abp@chr4:117675601..117675614, +
1.13e-56FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_ade46c05811268d5a8ef6dc2dea759abp@chr4:117675601..117675614, +
1.5e-56FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_ecbceae7e40688f72c0e219b498f3e33p@chr9:135089670..135089681, -
1.5e-56FFCP PHASE1:Hg19::chr10:133878269..133878278,+#_ecbceae7e40688f72c0e219b498f3e33p@chr10:133878269..133878278, +
1.5e-56FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_ecbceae7e40688f72c0e219b498f3e33p@chr9:135089670..135089681, -
1.5e-56FFCP PHASE2:Hg19::chr10:133878269..133878278,+#_ecbceae7e40688f72c0e219b498f3e33p@chr10:133878269..133878278, +
2.0e-56FFCP PHASE2:Hg19::chr7:94297970..94297982,+#_35b291ff1644a7313dee35927e8c4e15p@chr7:94297970..94297982, +
2.0e-56FFCP PHASE1:Hg19::chr7:94297970..94297982,+#_35b291ff1644a7313dee35927e8c4e15p@chr7:94297970..94297982, +
1.46e-50FFCP PHASE2:Hg19::chr5:71505323..71505333,+#_3180350968547767fd190ab333c395c2p@chr5:71505323..71505333, +
1.46e-50FFCP PHASE1:Hg19::chr5:71505323..71505333,+#_3180350968547767fd190ab333c395c2p@chr5:71505323..71505333, +
1.88e-50FFCP PHASE1:Hg19::chr18:5577640..5577652,-#_846d973f0c234a2f16e5d46b686e96ebp14@EPB41L3
1.88e-50FFCP PHASE2:Hg19::chr18:5577640..5577652,-#_846d973f0c234a2f16e5d46b686e96ebp14@EPB41L3
2.74e-50FFCP PHASE2:Hg19::chr4:114303795..114303800,+#_51f603973e0f3ea921e8de9abaabfa89p51@ANK2
2.74e-50FFCP PHASE2:Hg19::chr11:20621167..20621170,+#_51f603973e0f3ea921e8de9abaabfa89p6@SLC6A5
2.74e-50FFCP PHASE1:Hg19::chr4:114303795..114303800,+#_51f603973e0f3ea921e8de9abaabfa89p51@ANK2
2.74e-50FFCP PHASE1:Hg19::chr11:20621167..20621170,+#_51f603973e0f3ea921e8de9abaabfa89p6@SLC6A5
4.0e-50FFCP PHASE2:Hg19::chr22:37213554..37213565,-#_cf72d6fe41befef364cb189de43814eap4@PVALB
4.0e-50FFCP PHASE1:Hg19::chr22:37213554..37213565,-#_cf72d6fe41befef364cb189de43814eap4@PVALB
4.52e-50FFCP PHASE1:Hg19::chr2:218873244..218873256,-#_32c027abec1236e4212f91241334dbd4p@chr2:218873244..218873256, -
4.52e-50FFCP PHASE2:Hg19::chr6:56820018..56820029,+#_32c027abec1236e4212f91241334dbd4p16@BEND6
4.52e-50FFCP PHASE2:Hg19::chr2:218873244..218873256,-#_32c027abec1236e4212f91241334dbd4p@chr2:218873244..218873256, -
4.52e-50FFCP PHASE1:Hg19::chr6:56820018..56820029,+#_32c027abec1236e4212f91241334dbd4p16@BEND6
5.15e-50FFCP PHASE2:Hg19::chr3:183979132..183979143,-#_c7bbb93d7dff359e59b0e0cd2a630039p8@CAMK2N2
5.15e-50FFCP PHASE1:Hg19::chr3:183979132..183979143,-#_c7bbb93d7dff359e59b0e0cd2a630039p8@CAMK2N2
6.61e-50FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_196a1e80695e430036fd6c2a7aba20f0p7@SEZ6L
6.61e-50FFCP PHASE1:Hg19::chr11:81982984..81982991,+#_196a1e80695e430036fd6c2a7aba20f0p@chr11:81982984..81982991, +
6.61e-50FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_196a1e80695e430036fd6c2a7aba20f0p7@SEZ6L
6.61e-50FFCP PHASE2:Hg19::chr11:81982984..81982991,+#_196a1e80695e430036fd6c2a7aba20f0p@chr11:81982984..81982991, +
6.61e-50FFCP PHASE2:Hg19::chr8:82354790..82354800,-#_196a1e80695e430036fd6c2a7aba20f0p@chr8:82354790..82354800, -
6.61e-50FFCP PHASE1:Hg19::chr8:82354790..82354800,-#_196a1e80695e430036fd6c2a7aba20f0p@chr8:82354790..82354800, -
8.5e-50FFCP PHASE2:Hg19::chr1:160113171..160113182,+#_5e26266508639eda1bd9aba5f39009d9p@chr1:160113171..160113182, +
8.5e-50FFCP PHASE1:Hg19::chr1:160113171..160113182,+#_5e26266508639eda1bd9aba5f39009d9p@chr1:160113171..160113182, +
1.4e-49FFCP PHASE2:Hg19::chr6:55039307..55039326,+#_571538cdc07a9d0e4ad8676ce34dbf1fp1@HCRTR2
1.4e-49FFCP PHASE1:Hg19::chr6:55039307..55039326,+#_571538cdc07a9d0e4ad8676ce34dbf1fp1@HCRTR2
1.8e-49FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_8bc3343a959b45c83ecc69cc9450ee5dp8@R3HCC1
1.8e-49FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_8bc3343a959b45c83ecc69cc9450ee5dp8@R3HCC1
3.19e-45FFCP PHASE1:Hg19::chr15:60296481..60296492,+#_e332f5330ca40e08763f82040a5a979ap7@FOXB1
3.19e-45FFCP PHASE2:Hg19::chr15:60296481..60296492,+#_e332f5330ca40e08763f82040a5a979ap7@FOXB1
5.0e-45FFCP PHASE2:Hg19::chr3:58372039..58372043,+#_8997c0b62542a94f3a8fd5b488cf45cfp@chr3:58372039..58372043, +
5.0e-45FFCP PHASE1:Hg19::chr3:58372039..58372043,+#_8997c0b62542a94f3a8fd5b488cf45cfp@chr3:58372039..58372043, +
7.83e-45FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_102e1a564dddb8ec750f7582f49936b6p12@ATP1A2
7.83e-45FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_102e1a564dddb8ec750f7582f49936b6p12@ATP1A2
9.79e-45FFCP PHASE1:Hg19::chr22:29885906..29885916,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72ep@chr22:29885906..29885916, +
9.79e-45FFCP PHASE2:Hg19::chr8:28748765..28748785,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72ep10@HMBOX1
9.79e-45FFCP PHASE1:Hg19::chr8:28748765..28748785,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72ep10@HMBOX1
9.79e-45FFCP PHASE2:Hg19::chr22:29885906..29885916,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72ep@chr22:29885906..29885916, +
2.39e-44FFCP PHASE1:Hg19::chr18:74691000..74691005,-#_a5dde17471f2ba14d930a5746f79598dp@chr18:74691000..74691005, -
2.39e-44FFCP PHASE2:Hg19::chr18:74691000..74691005,-#_a5dde17471f2ba14d930a5746f79598dp@chr18:74691000..74691005, -
2.39e-44FFCP PHASE2:Hg19::chr17:42983463..42983466,-#_a5dde17471f2ba14d930a5746f79598dp45@GFAP
2.39e-44FFCP PHASE1:Hg19::chr17:42983463..42983466,-#_a5dde17471f2ba14d930a5746f79598dp45@GFAP
2.98e-44FFCP PHASE2:Hg19::chr7:12544061..12544073,+#_3531aea7094ec2fb281e504378e80d4dp1@ENST00000424453
2.98e-44FFCP PHASE1:Hg19::chr7:12544061..12544073,+#_3531aea7094ec2fb281e504378e80d4dp1@ENST00000424453
3.72e-44FFCP PHASE1:Hg19::chr13:70682590..70682601,-#_b3c735efce18f0012405783f376b1125p3@KLHL1
3.72e-44FFCP PHASE2:Hg19::chr13:70682590..70682601,-#_b3c735efce18f0012405783f376b1125p3@KLHL1
4.65e-44FFCP PHASE2:Hg19::chr8:81639875..81639889,-#_08490d8609d726bc2206b0ea625df6bdp@chr8:81639875..81639889, -
4.65e-44FFCP PHASE1:Hg19::chr8:81639875..81639889,-#_08490d8609d726bc2206b0ea625df6bdp@chr8:81639875..81639889, -
4.89e-41FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_8bc17943e166a555c1c1b0ce78b36acfp1@TPH2
4.89e-41FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_8bc17943e166a555c1c1b0ce78b36acfp1@TPH2
1.34e-40FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_7d10ca16a0999b296bbec1c154932281p@chr14:62010202..62010207, -
1.34e-40FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_7d10ca16a0999b296bbec1c154932281p@chr14:62010202..62010207, -
1.64e-40FFCP PHASE1:Hg19::chr8:24775490..24775500,+#_354be25afef1b0b5aef4ad4eccf5d198p@chr8:24775490..24775500, +
1.64e-40FFCP PHASE2:Hg19::chr8:24775490..24775500,+#_354be25afef1b0b5aef4ad4eccf5d198p@chr8:24775490..24775500, +
2.01e-40FFCP PHASE2:Hg19::chr4:67195068..67195099,-#_e812a4f14505619b72dedec8be94310ap@chr4:67195068..67195099, -
2.01e-40FFCP PHASE1:Hg19::chr4:67195068..67195099,-#_e812a4f14505619b72dedec8be94310ap@chr4:67195068..67195099, -
2.46e-40FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_f27aeee94271873602a952f1aa9e4fc0p@chr19:35789028..35789044, +
2.46e-40FFCP PHASE2:Hg19::chr1:155291376..155291428,+#_f27aeee94271873602a952f1aa9e4fc0p6@RUSC1
2.46e-40FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_f27aeee94271873602a952f1aa9e4fc0p@chr19:35789028..35789044, +
2.46e-40FFCP PHASE1:Hg19::chr1:155291376..155291428,+#_f27aeee94271873602a952f1aa9e4fc0p6@RUSC1
3.01e-40FFCP PHASE1:Hg19::chr1:24645071..24645074,+#_facf36022478794ed17a371c27645c70p@chr1:24645071..24645074, +
3.01e-40FFCP PHASE2:Hg19::chr1:24645071..24645074,+#_facf36022478794ed17a371c27645c70p@chr1:24645071..24645074, +
5.49e-40FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_f783fbfcdc67062ae58ae3ce0a7a0281p@chr2:179739649..179739660, -
5.49e-40FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_f783fbfcdc67062ae58ae3ce0a7a0281p@chr2:179739649..179739660, -
5.49e-40FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_f783fbfcdc67062ae58ae3ce0a7a0281p@chr6:33161034..33161047, -
5.49e-40FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_f783fbfcdc67062ae58ae3ce0a7a0281p@chr6:33161034..33161047, -
6.7e-40FFCP PHASE1:Hg19::chr6:151670422..151670433,+#_48447394dd80720fc38c844feccc9672p@chr6:151670422..151670433, +
6.7e-40FFCP PHASE2:Hg19::chr6:151670422..151670433,+#_48447394dd80720fc38c844feccc9672p@chr6:151670422..151670433, +
2.27e-37FFCP PHASE1:Hg19::chr11:121976070..121976081,-#_b1120b1037b646348a267c7dbf6af199p4@ENST00000534195
2.27e-37FFCP PHASE2:Hg19::chr11:121976070..121976081,-#_b1120b1037b646348a267c7dbf6af199p4@ENST00000534195
2.73e-37FFCP PHASE2:Hg19::chr2:25720514..25720525,-#_ad162b1fd6eba1088e263c9cc1ea50a1p16@DTNB
2.73e-37FFCP PHASE1:Hg19::chr2:25720514..25720525,-#_ad162b1fd6eba1088e263c9cc1ea50a1p16@DTNB
3.28e-37FFCP PHASE2:Hg19::chr17:42984370..42984375,-#_774565a11f816867f06c19b2867e63afp42@GFAP
3.28e-37FFCP PHASE1:Hg19::chr17:42984370..42984375,-#_774565a11f816867f06c19b2867e63afp42@GFAP
3.28e-37FFCP PHASE2:Hg19::chr17:11144580..11144595,+#_774565a11f816867f06c19b2867e63afp2@SHISA6
3.28e-37FFCP PHASE1:Hg19::chr17:11144580..11144595,+#_774565a11f816867f06c19b2867e63afp2@SHISA6

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