Main Page

We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this.

The data sources

• CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM.
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
• Swissregulon motifs, and Motif Activity Response Analysis (MARA)
  • http://www.swissregulon.unibas.ch/
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/mdehoon/MotifActivity/
• FF Ontology
  • https://fantom5-collaboration.gsc.riken.jp/files/data/shared/contrib/sample_ontology/FANTOM5v5/