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Difference between revisions of "CL:0000000"

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{{DISPLAYTITLE:title}}
 
 
 
{{CL
 
{{CL
|id=CL:0000000
 
|name=cell
 
|namespace=cell
 
|def=
 
|xref=
 
|is_a=
 
|synonym=
 
|comment=
 
 
|alt_id=
 
|alt_id=
|disjoint_from=
+
|comment=The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
|union_of=
 
 
|created_by=
 
|created_by=
|creation_date=
+
|def="A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000000
 +
|is_a=GO:0005575
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=cell
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
 +
|subset=
 +
|synonym=
 +
|union_of=
 +
|xref=FMA:68646;;GO:0005623;;KUPO:0000002;;WBbt:0004017;;XAO:0003012
 
}}
 
}}

Latest revision as of 04:32, 12 September 2014

Name:cell
Namespace:FANTOM
Definition:"A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
Xrefs:
links:

FMA:68646
GO:0005623
KUPO:0000002
WBbt:0004017

XAO:0003012
Comments:The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:GO:0005575(cellular_component)



Children


is a:CL:0000003 (native cell),FF:0000407 (whole cell (cellular fractionation control)),CL:0001034 (cell in vitro),FF:0103714 (VMRC-RCW cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000000 (cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster