Personal tools

Difference between revisions of "CL:0000080"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0000080 |name=circulating cell |namespace=cell |def="A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add] |xr...")
 
Line 2: Line 2:
 
|id=CL:0000080
 
|id=CL:0000080
 
|name=circulating cell
 
|name=circulating cell
|namespace=cell
+
|namespace=efo
 
|def="A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add]
 
|def="A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add]
 
|xref=
 
|xref=
|is_a=CL:0000144
+
|is_a=CL:0000144;;CL:0000988
 
|synonym=
 
|synonym=
 
|comment=
 
|comment=
Line 20: Line 20:
 
|located_in=
 
|located_in=
 
|part_of=UBERON:0000179
 
|part_of=UBERON:0000179
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
 +
|is_obsolete=
 +
|preceded_by=
 
}}
 
}}

Revision as of 08:36, 15 June 2012

Name:circulating cell
Namespace:efo
Definition:"A cell which moves among different tissues of the body, via blood, lymph, or other medium." [GOC:add]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000144(),CL:0000988(hematopoietic cell)
part_of:UBERON:0000179(haemolymphatic fluid)



Children


is a:FF:0000282 (Whole blood depleted of CD14-positive and CD15-positive cells (pluriselect depleted)),FF:0000283 (Whole blood depleted of CD19+ cells (pluriselect depleted)),FF:0000284 (Whole blood depleted of CD4+ and CD8+ cells (pluriselect depleted))

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000080 (circulating cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster