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Difference between revisions of "CL:0000333"

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{{CL
 
{{CL
|id=CL:0000333
+
|alt_id=
|name=neural crest cell
 
|namespace=cell;;efo
 
|def="A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [MESH:A.16.254.600]
 
|xref=FMA:86667
 
|is_a=CL:0000219;;CL:0002321
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [MESH:A.16.254.600]
|subset=
 
 
|derives_from=
 
|derives_from=
|develops_from=CL:0000133
+
|develops_from=CL:0000133;;CL:0007004
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0000333
 +
|is_a=CL:0000219 ;;CL:0002321
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=neural crest cell
 +
|namespace=cell;;efo
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym=
 +
|union_of=
 +
|xref=FMA:86667
 
}}
 
}}

Revision as of 01:17, 12 September 2014

Name:neural crest cell
Namespace:cell;;efo
Definition:"A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [MESH:A.16.254.600]
Xrefs:
links:
FMA:86667


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000219(motile cell),CL:0002321(embryonic cell)
develops_from:CL:0000133(neurectodermal cell),CL:0007004(premigratory neural crest cell)



Children


is a:CL:0000008 (migratory cranial neural crest cell),CL:0000011 (migratory trunk neural crest cell),CL:0002607 (enteric neural crest cell)
derives from:FF:0100932 (neuroblastoma cell line sample)
develops from:CL:0000005 (fibroblast neural crest derived),CL:0000123 (neuron associated cell (sensu Vertebrata)),CL:0000166 (chromaffin cell),CL:0000346 (hair follicle dermal papilla cell),CL:0000541 (melanoblast),CL:0002375 (Schwann cell precursor),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000333 (neural crest cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
8.33e-61FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_52377ec5cf0f349b1695827a22435897p@chr1:72873192..72873206, +
8.33e-61FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_52377ec5cf0f349b1695827a22435897p@chr8:28132545..28132551, +
8.33e-61FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_52377ec5cf0f349b1695827a22435897p@chr1:72873192..72873206, +
8.33e-61FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_52377ec5cf0f349b1695827a22435897p@chr8:28132545..28132551, +
1.74e-53FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_914378e86ef06f8c56eff6976b827dccp14@Slc3a2
1.74e-53FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_914378e86ef06f8c56eff6976b827dccp14@Slc3a2
3.55e-53FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_de1c4e9fc5d1b708b2d6583e0e90d366p@chr8:11006242..11006246, -
3.55e-53FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_de1c4e9fc5d1b708b2d6583e0e90d366p@chr8:11006242..11006246, -
8.65e-48FFCP PHASE1:Mm9::chr19:8788794..8788806,-#_699fdb2a46ffb63ce9718f9847713dccp6@Slc3a2
8.65e-48FFCP PHASE2:Mm9::chr3:121130390..121130408,-#_699fdb2a46ffb63ce9718f9847713dccp@chr3:121130390..121130408, -
8.65e-48FFCP PHASE2:Mm9::chr8:96677906..96677921,-#_699fdb2a46ffb63ce9718f9847713dccp@chr8:96677906..96677921, -
8.65e-48FFCP PHASE1:Mm9::chr3:121130390..121130408,-#_699fdb2a46ffb63ce9718f9847713dccp@chr3:121130390..121130408, -
8.65e-48FFCP PHASE1:Mm9::chr8:96677795..96677811,+#_699fdb2a46ffb63ce9718f9847713dccp@chr8:96677795..96677811, +
8.65e-48FFCP PHASE2:Mm9::chr8:96677795..96677811,+#_699fdb2a46ffb63ce9718f9847713dccp@chr8:96677795..96677811, +
8.65e-48FFCP PHASE2:Mm9::chr19:8788794..8788806,-#_699fdb2a46ffb63ce9718f9847713dccp6@Slc3a2
8.65e-48FFCP PHASE1:Mm9::chr8:96677906..96677921,-#_699fdb2a46ffb63ce9718f9847713dccp@chr8:96677906..96677921, -
1.01e-47FFCP PHASE1:Mm9::chr11:102758074..102758083,+#_9ded7e58b8dc76b180386b74d3c0adf6p@chr11:102758074..102758083, +
1.01e-47FFCP PHASE1:Mm9::chr3:89028994..89029006,+#_9ded7e58b8dc76b180386b74d3c0adf6p5@Thbs3
1.01e-47FFCP PHASE2:Mm9::chr11:102758074..102758083,+#_9ded7e58b8dc76b180386b74d3c0adf6p@chr11:102758074..102758083, +
1.01e-47FFCP PHASE2:Mm9::chr3:89028994..89029006,+#_9ded7e58b8dc76b180386b74d3c0adf6p5@Thbs3
1.39e-47FFCP PHASE2:Mm9::chr14:122864178..122864180,+#_00be17920439c0f78192b51fde5feeacp@chr14:122864178..122864180, +
1.39e-47FFCP PHASE1:Mm9::chr14:122864178..122864180,+#_00be17920439c0f78192b51fde5feeacp@chr14:122864178..122864180, +
4.52e-45FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_697365cd4e2b87cfeaa85e38d982b756p4@C1ql1
4.52e-45FFCP PHASE2:Mm9::chr9:37174919..37174932,+#_697365cd4e2b87cfeaa85e38d982b756p3@Hepacam
4.52e-45FFCP PHASE1:Mm9::chr9:37174919..37174932,+#_697365cd4e2b87cfeaa85e38d982b756p3@Hepacam
4.52e-45FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_697365cd4e2b87cfeaa85e38d982b756p4@C1ql1
5.38e-45FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_4b226eb02d93a0cb64e9b8b1aa6e61a6p@chr11:102754827..102754845, -
5.38e-45FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_4b226eb02d93a0cb64e9b8b1aa6e61a6p@chr11:102754827..102754845, -
7.62e-45FFCP PHASE1:Mm9::chr14:70592626..70592638,-#_87cd66566903eca44b2de0aa4d29e7e2p@chr14:70592626..70592638, -
7.62e-45FFCP PHASE2:Mm9::chr14:70592626..70592638,-#_87cd66566903eca44b2de0aa4d29e7e2p@chr14:70592626..70592638, -
8.43e-44FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_f3de1233813f95d0cf33274b7dce5cb4p@chr8:73022520..73022524, +
8.43e-44FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr16:15895800..15895814, -
8.43e-44FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr16:15895800..15895814, -
8.43e-44FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_f3de1233813f95d0cf33274b7dce5cb4p@chr8:73022520..73022524, +
8.43e-44FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr11:102749254..102749263, -
8.43e-44FFCP PHASE2:Mm9::chr3:88990698..88990709,+#_f3de1233813f95d0cf33274b7dce5cb4p@chr3:88990698..88990709, +
8.43e-44FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr11:75244815..75244826, -
8.43e-44FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr11:102749254..102749263, -
8.43e-44FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_f3de1233813f95d0cf33274b7dce5cb4p@chr11:75244815..75244826, -
8.43e-44FFCP PHASE1:Mm9::chr3:88990698..88990709,+#_f3de1233813f95d0cf33274b7dce5cb4p@chr3:88990698..88990709, +
3.14e-43FFCP PHASE1:Mm9::chr8:96676892..96676904,+#_1bebb9b942bbf08f92f7e5c8379a32d8p@chr8:96676892..96676904, +
3.14e-43FFCP PHASE1:Mm9::chr8:93340930..93340944,-#_1bebb9b942bbf08f92f7e5c8379a32d8p@chr8:93340930..93340944, -
3.14e-43FFCP PHASE2:Mm9::chr8:96676892..96676904,+#_1bebb9b942bbf08f92f7e5c8379a32d8p@chr8:96676892..96676904, +
3.14e-43FFCP PHASE2:Mm9::chr8:93340930..93340944,-#_1bebb9b942bbf08f92f7e5c8379a32d8p@chr8:93340930..93340944, -
3.62e-43FFCP PHASE2:Mm9::chr3:89030096..89030118,+#_3417eee5cfc4ab3acc5475bae7bde1d4p4@Thbs3
3.62e-43FFCP PHASE1:Mm9::chr3:89030096..89030118,+#_3417eee5cfc4ab3acc5475bae7bde1d4p4@Thbs3
4.82e-43FFCP PHASE2:Mm9::chr12:112910294..112910300,-#_11b5bbc9950723d32d1a632153fbdd84p@chr12:112910294..112910300, -
4.82e-43FFCP PHASE1:Mm9::chr12:112910294..112910300,-#_11b5bbc9950723d32d1a632153fbdd84p@chr12:112910294..112910300, -
5.57e-43FFCP PHASE2:Mm9::chr11:102755848..102755857,-#_966ba63777570be888a8cb41886ce892p@chr11:102755848..102755857, -
5.57e-43FFCP PHASE1:Mm9::chr11:102755848..102755857,-#_966ba63777570be888a8cb41886ce892p@chr11:102755848..102755857, -
1.31e-42FFCP PHASE1:Mm9::chr7:148211055..148211073,+#_edbf63ac158f585fb0613f68233202fap@chr7:148211055..148211073, +
1.31e-42FFCP PHASE2:Mm9::chr7:148211055..148211073,+#_edbf63ac158f585fb0613f68233202fap@chr7:148211055..148211073, +
2.31e-42FFCP PHASE1:Mm9::chr2:11261132..11261153,+#_1faf5a15e17f5d40f9e9b3a9c33c7355p2@Gm13293
2.31e-42FFCP PHASE2:Mm9::chr2:11261132..11261153,+#_1faf5a15e17f5d40f9e9b3a9c33c7355p2@Gm13293
1.6e-40FFCP PHASE2:Mm9::chr1:174128350..174128367,+#_925ef6e9fa4acdeb078f76eab9ac4d6ap@chr1:174128350..174128367, +
1.6e-40FFCP PHASE1:Mm9::chr1:174128350..174128367,+#_925ef6e9fa4acdeb078f76eab9ac4d6ap@chr1:174128350..174128367, +
7.38e-40FFCP PHASE2:Mm9::chr1:72895848..72895864,+#_0b7049648575b7fd08c9d6537aaa78c9p@chr1:72895848..72895864, +
7.38e-40FFCP PHASE1:Mm9::chr1:72895848..72895864,+#_0b7049648575b7fd08c9d6537aaa78c9p@chr1:72895848..72895864, +
1.17e-39FFCP PHASE2:Mm9::chr3:88990668..88990679,+#_1630472aaa8897a6a786476ee4fa176dp@chr3:88990668..88990679, +
1.17e-39FFCP PHASE1:Mm9::chr3:88990668..88990679,+#_1630472aaa8897a6a786476ee4fa176dp@chr3:88990668..88990679, +
1.59e-39FFCP PHASE2:Mm9::chr19:8788690..8788697,-#_137138e038dba18ed85dcd3320b091e4p17@Slc3a2
1.59e-39FFCP PHASE1:Mm9::chr19:8788690..8788697,-#_137138e038dba18ed85dcd3320b091e4p17@Slc3a2
2.16e-39FFCP PHASE2:Mm9::chr8:96704054..96704065,-#_1bd357b1e218c7e2fe32992592be8becp@chr8:96704054..96704065, -
2.16e-39FFCP PHASE1:Mm9::chr8:96704054..96704065,-#_1bd357b1e218c7e2fe32992592be8becp@chr8:96704054..96704065, -
2.2e-39FFCP PHASE2:Mm9::chr1:174150595..174150602,-#_615c7f3ef49702a684fb1a8583733d49p@chr1:174150595..174150602, -
2.2e-39FFCP PHASE1:Mm9::chr1:174150595..174150602,-#_615c7f3ef49702a684fb1a8583733d49p@chr1:174150595..174150602, -
2.51e-39FFCP PHASE1:Mm9::chr1:174128178..174128192,-#_00a7100610aae7f59c7a8d8fc173780ep@chr1:174128178..174128192, -
2.51e-39FFCP PHASE1:Mm9::chr16:15895858..15895888,-#_00a7100610aae7f59c7a8d8fc173780ep@chr16:15895858..15895888, -
2.51e-39FFCP PHASE2:Mm9::chr1:174128178..174128192,-#_00a7100610aae7f59c7a8d8fc173780ep@chr1:174128178..174128192, -
2.51e-39FFCP PHASE2:Mm9::chr16:15895858..15895888,-#_00a7100610aae7f59c7a8d8fc173780ep@chr16:15895858..15895888, -
8.08e-39FFCP PHASE2:Mm9::chr1:72895732..72895747,-#_28ce26ddf457cd89ef1992bf2d36c804p@chr1:72895732..72895747, -
8.08e-39FFCP PHASE1:Mm9::chr1:72895732..72895747,-#_28ce26ddf457cd89ef1992bf2d36c804p@chr1:72895732..72895747, -
4.04e-38FFCP PHASE1:Mm9::chr19:12839908..12839933,-#_682a574d34b59308902510fdf7c50dc5p2@Cntf
4.04e-38FFCP PHASE2:Mm9::chr19:12839908..12839933,-#_682a574d34b59308902510fdf7c50dc5p2@Cntf
5.94e-38FFCP PHASE2:Mm9::chr1:72898598..72898634,+#_5b01173c42e462b23172b359ec87cc52p@chr1:72898598..72898634, +
5.94e-38FFCP PHASE1:Mm9::chr1:72898598..72898634,+#_5b01173c42e462b23172b359ec87cc52p@chr1:72898598..72898634, +
7.4e-38FFCP PHASE2:Mm9::chr1:72898658..72898669,+#_973fc3523d6baba2613927ace75e1fe9p@chr1:72898658..72898669, +
7.4e-38FFCP PHASE1:Mm9::chr1:72898658..72898669,+#_973fc3523d6baba2613927ace75e1fe9p@chr1:72898658..72898669, +
1.03e-37FFCP PHASE2:Mm9::chr11:88828250..88828258,-#_c8210ce1ad1dec079f1f131b63319498p1@ENSMUST00000121228
1.03e-37FFCP PHASE1:Mm9::chr11:88828250..88828258,-#_c8210ce1ad1dec079f1f131b63319498p1@ENSMUST00000121228
9.57e-37FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_a29de8b792489dcd7cb7a283d5b319acp@chr11:102754448..102754459, -
9.57e-37FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_a29de8b792489dcd7cb7a283d5b319acp@chr11:102754448..102754459, -
1.13e-36FFCP PHASE1:Mm9::chr1:72895689..72895698,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr1:72895689..72895698, -
1.13e-36FFCP PHASE2:Mm9::chr14:70592673..70592699,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr14:70592673..70592699, -
1.13e-36FFCP PHASE1:Mm9::chr14:70592673..70592699,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr14:70592673..70592699, -
1.13e-36FFCP PHASE2:Mm9::chr4:153975408..153975411,+#_de9dd9df13de3e44f6c153cd84b88cc9p1@ENSMUST00000132106
1.13e-36FFCP PHASE1:Mm9::chr4:153975408..153975411,+#_de9dd9df13de3e44f6c153cd84b88cc9p1@ENSMUST00000132106
1.13e-36FFCP PHASE2:Mm9::chr1:174128464..174128474,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr1:174128464..174128474, -
1.13e-36FFCP PHASE2:Mm9::chr1:72895689..72895698,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr1:72895689..72895698, -
1.13e-36FFCP PHASE1:Mm9::chr1:174128464..174128474,-#_de9dd9df13de3e44f6c153cd84b88cc9p@chr1:174128464..174128474, -
1.59e-36FFCP PHASE2:Mm9::chr1:72898643..72898650,+#_1cc35f8e7d0e470cebe5040efa9523bcp@chr1:72898643..72898650, +
1.59e-36FFCP PHASE1:Mm9::chr1:72898643..72898650,+#_1cc35f8e7d0e470cebe5040efa9523bcp@chr1:72898643..72898650, +
1.59e-36FFCP PHASE2:Mm9::chr1:72898728..72898736,+#_1cc35f8e7d0e470cebe5040efa9523bcp@chr1:72898728..72898736, +
1.59e-36FFCP PHASE1:Mm9::chr1:72898728..72898736,+#_1cc35f8e7d0e470cebe5040efa9523bcp@chr1:72898728..72898736, +
1.88e-36FFCP PHASE2:Mm9::chr1:72895653..72895660,+#_10f65ebe90ab173841f6000d8376e314p9@Igfbp2
1.88e-36FFCP PHASE1:Mm9::chr1:72895653..72895660,+#_10f65ebe90ab173841f6000d8376e314p9@Igfbp2
2.47e-36FFCP PHASE1:Mm9::chr8:93340981..93340990,-#_736c2590806bdb501f7221bf23e645edp@chr8:93340981..93340990, -
2.47e-36FFCP PHASE2:Mm9::chr8:93340981..93340990,-#_736c2590806bdb501f7221bf23e645edp@chr8:93340981..93340990, -
3.99e-36FFCP PHASE1:Mm9::chr8:96676922..96676933,+#_cd39afc7f751d90b4b432d31aab88457p@chr8:96676922..96676933, +
3.99e-36FFCP PHASE2:Mm9::chr8:96676922..96676933,+#_cd39afc7f751d90b4b432d31aab88457p@chr8:96676922..96676933, +