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CL:0000540

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Name:neuron
Namespace:efo
Definition:"The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474]
Xrefs:
links:

BTO:0000938
FBbt:00005106
FMA:54527

WBbt:0003679
Synonyms: "nerve cell" EXACT []
Comments:These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000393(electrically responsive cell),CL:0000404(electrically signaling cell),CL:0002319(neural cell),EFO:0002963()
develops_from:CL:0000031(neuroblast)



Children


is a:CL:0000107 (autonomic neuron),CL:0000526 (afferent neuron),CL:2000029 (central nervous system neuron)
derives from:FF:0000203 (mouse neuron samples),FF:0000348 (human neuron samples),FF:0200005 (iPS differentiation to neuron sample),FF:0200030 (neurons - spiral ganglion sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000540 (neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
1.83e-98FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
1.83e-98FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:93269596..93269602, +
1.83e-98FFCP PHASE1:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:93269596..93269602, +
1.83e-98FFCP PHASE2:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
1.83e-98FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
6.82e-78FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
6.82e-78FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
2.58e-74FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
2.58e-74FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
2.58e-74FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
2.58e-74FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
3.31e-74FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
3.31e-74FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
4.26e-74FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
4.26e-74FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
5.47e-74FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
5.47e-74FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
5.47e-74FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
5.47e-74FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
2.2e-70FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.2e-70FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.83e-66FFCP PHASE1:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP PHASE1:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP PHASE1:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP PHASE1:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP PHASE1:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP PHASE1:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP PHASE1:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
2.83e-66FFCP PHASE2:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP PHASE2:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP PHASE2:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP PHASE2:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP PHASE2:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP PHASE2:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP PHASE2:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
8.15e-60FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20p@chr9:100199938..100199951, -
8.15e-60FFCP PHASE2:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
8.15e-60FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20p@chr9:100199938..100199951, -
8.15e-60FFCP PHASE1:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
9.96e-60FFCP PHASE1:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
9.96e-60FFCP PHASE2:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
1.22e-59FFCP PHASE2:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP PHASE2:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.22e-59FFCP PHASE2:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP PHASE1:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP PHASE1:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.22e-59FFCP PHASE1:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP PHASE1:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.22e-59FFCP PHASE2:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.49e-59FFCP PHASE2:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP PHASE1:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP PHASE1:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP PHASE1:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.49e-59FFCP PHASE2:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP PHASE2:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.82e-59FFCP PHASE2:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
1.82e-59FFCP PHASE1:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
2.72e-59FFCP PHASE1:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
2.72e-59FFCP PHASE2:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
5.43e-59FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
5.43e-59FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
1.11e-58FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.11e-58FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.36e-58FFCP PHASE1:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13p@chr1:213164012..213164023, +
1.36e-58FFCP PHASE2:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13p@chr1:213164012..213164023, +
2.28e-56FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
2.28e-56FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
8.29e-55FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
8.29e-55FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
2.41e-54FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
2.41e-54FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
7.68e-54FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
7.68e-54FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
4.63e-53FFCP PHASE1:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dcp@chr17:25672542..25672555, -
4.63e-53FFCP PHASE2:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dcp@chr17:25672542..25672555, -
1.37e-52FFCP PHASE2:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.37e-52FFCP PHASE1:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.31e-50FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363aep@chr8:125944694..125944740, +
1.31e-50FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363aep@chr8:125944694..125944740, +