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CL:0000827

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Name:pro-T cell
Namespace:FANTOM
Definition:"A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
Synonyms: "DN1 cell" NARROW []
"DN1 thymocyte" NARROW []
"pro-T lymphocyte" EXACT []
"progenitor T cell" EXACT []
"TN1 cell" NARROW []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000838(lymphoid lineage restricted progenitor cell)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor)
develops from:CL:0000084 (T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.9e-89FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061p@chr5:35859622..35859626, +
2.9e-89FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061p@chr5:35859622..35859626, +
1.02e-73FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444fp4@Tnfsf8
1.02e-73FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444fp4@Tnfsf8
1.33e-72FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867bp@chr2:87053288..87053295, -
1.33e-72FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867bp@chr2:87053288..87053295, -
1.48e-71FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3dp@chr17:80085772..80085810, -
1.48e-71FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3dp@chr17:80085772..80085810, -
6.78e-71FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:11590836..11590851, +
6.78e-71FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:99015330..99015341, -
6.78e-71FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@uc007tsm.1
6.78e-71FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@ENSMUST00000103733
6.78e-71FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr6:48637679..48637692, +
6.78e-71FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr19:10869146..10869168, -
6.78e-71FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@uc007tsm.1
6.78e-71FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@ENSMUST00000103733
6.78e-71FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:99015330..99015341, -
6.78e-71FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9p3@Tnfrsf25
6.78e-71FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr4:32339511..32339518, +
6.78e-71FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:11590836..11590851, +
6.78e-71FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr19:10869146..10869168, -
6.78e-71FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9p3@Tnfrsf25
6.78e-71FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr4:32339511..32339518, +
2.06e-70FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfbp1@CU690625
2.06e-70FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfbp1@CU690625
1.31e-69FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368p10@HNRPLL
1.31e-69FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368p10@HNRPLL
6.71e-69FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3p@chr17:29637535..29637559, +
6.71e-69FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3p@chr17:29637535..29637559, +
7.62e-69FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863p@chr4:63521957..63521980, -
7.62e-69FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863p@chr4:63521957..63521980, -
2.06e-68FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7ep@chr15:89179440..89179457, -
2.06e-68FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7ep@chr15:89179440..89179457, -
2.88e-67FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fbp@chr5:35854487..35854499, -
2.88e-67FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fbp@chr5:35854487..35854499, -
6.74e-66FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387p@chr4:32335511..32335532, +
6.74e-66FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387p@chr4:32335511..32335532, +
9.47e-66FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aap@chr5:35854779..35854826, +
9.47e-66FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aap@chr5:35854779..35854826, +
1.04e-65FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958p@chr4:103551892..103551903, -
1.04e-65FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958p@chr4:103551892..103551903, -
3.53e-65FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbbp7@IL32
3.53e-65FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbbp7@IL32
7.34e-65FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606cp@chr1:90075464..90075470, -
7.34e-65FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606cp@chr1:90075464..90075470, -
1.94e-64FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3p@chr6:129225479..129225509, +
1.94e-64FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3p@chr6:129225479..129225509, +
3.0e-64FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722p1@GTSCR1
3.0e-64FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722p1@GTSCR1
3.36e-64FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39p3@Tnfsf8
3.36e-64FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39p3@Tnfsf8
3.94e-64FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706p6@LCK
3.94e-64FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706p6@LCK
4.15e-64FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924dp1@ENSMUST00000103714
4.15e-64FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924dp@chr14:56207154..56207165, -
4.15e-64FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924dp1@ENSMUST00000103714
4.15e-64FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924dp@chr14:56207154..56207165, -
4.15e-64FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924dp@chr8:84082784..84082795, +
4.17e-64FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09dp@chr5:35856882..35856909, -
4.17e-64FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09dp@chr5:35856882..35856909, -
4.91e-64FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23p@chr14:54838649..54838660, +
4.91e-64FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23p@chr4:32422919..32422935, +
4.91e-64FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23p@chr14:54838649..54838660, +
4.91e-64FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23p@chr4:32422919..32422935, +
5.81e-64FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7cp@chr15:27786221..27786240, -
5.81e-64FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7cp@chr15:27786221..27786240, -
5.87e-64FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832p3@ZAP70
5.87e-64FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832p3@ZAP70
6.87e-64FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29p@chr3:103672068..103672090, -
7.69e-64FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fdp@chr1:108608936..108608961, -
7.69e-64FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fdp@chr1:108608936..108608961, -
8.12e-64FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455p@chr6:48634453..48634468, -
8.12e-64FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455p@chr6:48634453..48634468, -
1.13e-63FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14p5@uc007vxz.1
1.13e-63FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14p5@uc007vxz.1
1.59e-63FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822p@chr7:132751140..132751183, +
1.59e-63FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822p@chr7:132751140..132751183, +
4.29e-63FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_f735b488960fa2c6aa93dcadc6d84807p@chr14:53242248..53242261, +
4.29e-63FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_f735b488960fa2c6aa93dcadc6d84807p@chr14:54817583..54817593, -
4.29e-63FFCP PHASE2:Mm9::chr14:54831066..54831079,+#_f735b488960fa2c6aa93dcadc6d84807p@chr14:54831066..54831079, +
4.29e-63FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_f735b488960fa2c6aa93dcadc6d84807p@chr1:140069290..140069308, +
4.29e-63FFCP PHASE2:Mm9::chr9:32536145..32536180,+#_f735b488960fa2c6aa93dcadc6d84807p@chr9:32536145..32536180, +
4.29e-63FFCP PHASE2:Mm9::chr9:32539732..32539750,+#_f735b488960fa2c6aa93dcadc6d84807p@chr9:32539732..32539750, +
4.29e-63FFCP PHASE2:Mm9::chr6:125215605..125215616,+#_f735b488960fa2c6aa93dcadc6d84807p3@4930417O13Rik
4.29e-63FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f735b488960fa2c6aa93dcadc6d84807p@chr1:167720341..167720362, +
4.29e-63FFCP PHASE2:Mm9::chr4:155396384..155396395,-#_f735b488960fa2c6aa93dcadc6d84807p@chr4:155396384..155396395, -
4.29e-63FFCP PHASE2:Mm9::chr4:155405070..155405083,+#_f735b488960fa2c6aa93dcadc6d84807p@chr4:155405070..155405083, +