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Difference between revisions of "CL:0002195"

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|located_in=
 
|located_in=
 
|name=hepatic stem cell
 
|name=hepatic stem cell
|namespace=cell
+
|namespace=FANTOM
 
|obo_creation_date=2010-08-30T02:00:42Z
 
|obo_creation_date=2010-08-30T02:00:42Z
 
|part_of=UBERON:0002107
 
|part_of=UBERON:0002107

Latest revision as of 07:41, 12 September 2014

Name:hepatic stem cell
Namespace:FANTOM
Definition:"A stem cell that can give rise to the cells of the liver." [GOC:tfm]
Xrefs:
links:
FMA:86577
Created by:tmeehan
Creation date:2010-08-30T02:00:42Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000048(multi fate stem cell)
part_of:UBERON:0002107(liver)



Children


is a:CL:0002571 (hepatic mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002195 (hepatic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr10:91939935..91939941,+#_5818a7466da16b30cf400224b695b087p@chr10:91939935..91939941, +
3.29e-195FFCP PHASE1:Hg19::chr5:148586717..148586723,+#_5818a7466da16b30cf400224b695b087p@chr5:148586717..148586723, +
3.29e-195FFCP PHASE2:Hg19::chr10:91939935..91939941,+#_5818a7466da16b30cf400224b695b087p@chr10:91939935..91939941, +
3.29e-195FFCP PHASE2:Hg19::chr5:148586717..148586723,+#_5818a7466da16b30cf400224b695b087p@chr5:148586717..148586723, +
4.61e-131FFCP PHASE1:Hg19::chr20:35695582..35695602,-#_90cdff056508a9bfc43a5a7dd4638b8bp@chr20:35695582..35695602, -
4.61e-131FFCP PHASE1:Hg19::chr5:148600871..148600881,-#_90cdff056508a9bfc43a5a7dd4638b8bp@chr5:148600871..148600881, -
4.61e-131FFCP PHASE2:Hg19::chr5:148600871..148600881,-#_90cdff056508a9bfc43a5a7dd4638b8bp@chr5:148600871..148600881, -
4.61e-131FFCP PHASE2:Hg19::chr20:35695582..35695602,-#_90cdff056508a9bfc43a5a7dd4638b8bp@chr20:35695582..35695602, -
1.75e-130FFCP PHASE1:Hg19::chr4:175131715..175131722,+#_8524a5a74e926aae4f52907c3bbcd113p@chr4:175131715..175131722, +
1.75e-130FFCP PHASE2:Hg19::chr4:175131715..175131722,+#_8524a5a74e926aae4f52907c3bbcd113p@chr4:175131715..175131722, +
2.56e-98FFCP PHASE1:Hg19::chr14:65105965..65105968,-#_6a248fe59039a152bc11189e2f524ed7p@chr14:65105965..65105968, -
2.56e-98FFCP PHASE2:Hg19::chr14:65105965..65105968,-#_6a248fe59039a152bc11189e2f524ed7p@chr14:65105965..65105968, -
2.56e-98FFCP PHASE1:Hg19::chr9:94955376..94955381,+#_6a248fe59039a152bc11189e2f524ed7p@chr9:94955376..94955381, +
2.56e-98FFCP PHASE2:Hg19::chr9:94955376..94955381,+#_6a248fe59039a152bc11189e2f524ed7p@chr9:94955376..94955381, +
3.96e-66FFCP PHASE1:Hg19::chr22:25091949..25091962,-#_89667bc98b4c73dbe585fbf5481720e5p@chr22:25091949..25091962, -
3.96e-66FFCP PHASE2:Hg19::chr22:25091949..25091962,-#_89667bc98b4c73dbe585fbf5481720e5p@chr22:25091949..25091962, -
1.08e-65FFCP PHASE1:Hg19::chr18:72618246..72618294,-#_dc1a4f9b77c8af696f8e598c387eb17cp@chr18:72618246..72618294, -
1.08e-65FFCP PHASE2:Hg19::chr18:72618246..72618294,-#_dc1a4f9b77c8af696f8e598c387eb17cp@chr18:72618246..72618294, -
1.08e-65FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_dc1a4f9b77c8af696f8e598c387eb17cp1@ENST00000435177
1.08e-65FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_dc1a4f9b77c8af696f8e598c387eb17cp1@ENST00000435177
2.02e-57FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_7b0a660f06c6ee8a8c7482d00216b4aap@chr10:92178805..92178827, +
2.02e-57FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_7b0a660f06c6ee8a8c7482d00216b4aap@chr10:92178805..92178827, +
1.13e-56FFCP PHASE1:Hg19::chr4:86683248..86683251,+#_832445dc397b32f5f7a5c34fad129b98p@chr4:86683248..86683251, +
1.13e-56FFCP PHASE2:Hg19::chr4:86683248..86683251,+#_832445dc397b32f5f7a5c34fad129b98p@chr4:86683248..86683251, +
1.5e-56FFCP PHASE1:Hg19::chr9:112889870..112889881,+#_733a497ba1e0219d4eac63a792863637p24@AKAP2, p26@PALM2-AKAP2
1.5e-56FFCP PHASE2:Hg19::chr9:112889870..112889881,+#_733a497ba1e0219d4eac63a792863637p24@AKAP2, p26@PALM2-AKAP2
1.46e-50FFCP PHASE2:Hg19::chr9:12701369..12701379,+#_b3c3b67f96b84221e35dc9a1ef5f3632p29@TYRP1
1.46e-50FFCP PHASE1:Hg19::chr9:12701369..12701379,+#_b3c3b67f96b84221e35dc9a1ef5f3632p29@TYRP1
2.74e-50FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_0549f77ecb78bed052ad4aedf61a66e3p19@SMEK2
2.74e-50FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_0549f77ecb78bed052ad4aedf61a66e3p19@SMEK2
5.15e-50FFCP PHASE2:Hg19::chr4:175135724..175135735,-#_04240ed90707be35f1ab77d890e250d3p@chr4:175135724..175135735, -
5.15e-50FFCP PHASE1:Hg19::chr4:175135724..175135735,-#_04240ed90707be35f1ab77d890e250d3p@chr4:175135724..175135735, -
1.09e-49FFCP PHASE1:Hg19::chr18:77558264..77558310,+#_dca1b7fd5f015d98da29c3f6050816bap@chr18:77558264..77558310, +
1.09e-49FFCP PHASE2:Hg19::chr18:77558264..77558310,+#_dca1b7fd5f015d98da29c3f6050816bap@chr18:77558264..77558310, +
1.09e-49FFCP PHASE1:Hg19::chr2:216995311..216995323,+#_dca1b7fd5f015d98da29c3f6050816bap27@XRCC5
1.09e-49FFCP PHASE2:Hg19::chr2:216995311..216995323,+#_dca1b7fd5f015d98da29c3f6050816bap27@XRCC5
4.0e-45FFCP PHASE1:Hg19::chr15:56208964..56208977,-#_5a6feb7ee24c79bf515e6eb14d3d26cdp11@NEDD4
4.0e-45FFCP PHASE2:Hg19::chr15:56208964..56208977,-#_5a6feb7ee24c79bf515e6eb14d3d26cdp11@NEDD4
7.83e-45FFCP PHASE1:Hg19::chr1:235123146..235123150,-#_b722bb6505d40a5fc6b79aceed5f0b68p@chr1:235123146..235123150, -
7.83e-45FFCP PHASE2:Hg19::chr1:235123146..235123150,-#_b722bb6505d40a5fc6b79aceed5f0b68p@chr1:235123146..235123150, -
3.99e-41FFCP PHASE1:Hg19::chr20:35695476..35695506,-#_824aa95e56d545d2152e1476b2e14f5ep@chr20:35695476..35695506, -
3.99e-41FFCP PHASE2:Hg19::chr20:35695476..35695506,-#_824aa95e56d545d2152e1476b2e14f5ep@chr20:35695476..35695506, -
5.99e-41FFCP PHASE1:Hg19::chr4:175131785..175131801,+#_957575f4c6ac102ef830e74f710d9170p@chr4:175131785..175131801, +
5.99e-41FFCP PHASE2:Hg19::chr4:175131785..175131801,+#_957575f4c6ac102ef830e74f710d9170p@chr4:175131785..175131801, +
6.7e-40FFCP PHASE1:Hg19::chr11:9588526..9588534,+#_1ca87ee639fa8eb75f0de51773ca327ap@chr11:9588526..9588534, +
6.7e-40FFCP PHASE2:Hg19::chr11:9588526..9588534,+#_1ca87ee639fa8eb75f0de51773ca327ap@chr11:9588526..9588534, +
9.99e-40FFCP PHASE1:Hg19::chr4:174440289..174440300,-#_73747c335c03d84874127e5b1b8c45aep@chr4:174440289..174440300, -
9.99e-40FFCP PHASE2:Hg19::chr4:174440289..174440300,-#_73747c335c03d84874127e5b1b8c45aep@chr4:174440289..174440300, -
1.57e-37FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_cfa3807dbbf6e8affc2da1772240e1cbp@chr7:136759435..136759447, +
1.57e-37FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_cfa3807dbbf6e8affc2da1772240e1cbp@chr7:136759435..136759447, +
9.84e-37FFCP PHASE1:Hg19::chr9:12701351..12701368,+#_da6e7abb7d901774a96f45423c8dd4f9p21@TYRP1
9.84e-37FFCP PHASE2:Hg19::chr9:12701351..12701368,+#_da6e7abb7d901774a96f45423c8dd4f9p21@TYRP1
1.18e-36FFCP PHASE2:Hg19::chr20:44410265..44410286,-#_e331bc97acf66990fce80dff9e0b1b63p@chr20:44410265..44410286, -
1.18e-36FFCP PHASE1:Hg19::chr20:44410265..44410286,-#_e331bc97acf66990fce80dff9e0b1b63p@chr20:44410265..44410286, -
2.45e-36FFCP PHASE1:Hg19::chr1:109935515..109935518,-#_300d40c71987365601eb897033da5c2ap@chr1:109935515..109935518, -
2.45e-36FFCP PHASE2:Hg19::chr1:109935515..109935518,-#_300d40c71987365601eb897033da5c2ap@chr1:109935515..109935518, -
1.11e-34FFCP PHASE1:Hg19::chr10:92173191..92173202,+#_3fade06a4e0431258d3e6f97260bdad0p@chr10:92173191..92173202, +
1.11e-34FFCP PHASE2:Hg19::chr10:92173191..92173202,+#_3fade06a4e0431258d3e6f97260bdad0p@chr10:92173191..92173202, +
7.05e-34FFCP PHASE1:Hg19::chr16:89686480..89686486,+#_d0c64474738bc9aad5686d81f8a8253dp@chr16:89686480..89686486, +
7.05e-34FFCP PHASE1:Hg19::chr4:174460524..174460526,+#_d0c64474738bc9aad5686d81f8a8253dp2@NBLA00301
7.05e-34FFCP PHASE2:Hg19::chr4:174460524..174460526,+#_d0c64474738bc9aad5686d81f8a8253dp2@NBLA00301
7.05e-34FFCP PHASE1:Hg19::chr13:37420608..37420609,-#_d0c64474738bc9aad5686d81f8a8253dp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE2:Hg19::chr16:89686480..89686486,+#_d0c64474738bc9aad5686d81f8a8253dp@chr16:89686480..89686486, +
7.05e-34FFCP PHASE2:Hg19::chr13:37420608..37420609,-#_d0c64474738bc9aad5686d81f8a8253dp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE1:Hg19::chrX:47509466..47509475,-#_d0c64474738bc9aad5686d81f8a8253dp@chrX:47509466..47509475, -
7.05e-34FFCP PHASE2:Hg19::chrX:47509466..47509475,-#_d0c64474738bc9aad5686d81f8a8253dp@chrX:47509466..47509475, -
8.39e-34FFCP PHASE1:Hg19::chr2:38148042..38148060,+#_65960ae879f31a4f12b793de1a5b30dbp@chr2:38148042..38148060, +
8.39e-34FFCP PHASE2:Hg19::chr2:38148042..38148060,+#_65960ae879f31a4f12b793de1a5b30dbp@chr2:38148042..38148060, +
1.17e-33FFCP PHASE1:Hg19::chrX:107681458..107681465,-#_c587497bf547b89a2f3a1c71a6d9df67p7@COL4A6
1.17e-33FFCP PHASE2:Hg19::chrX:107681458..107681465,-#_c587497bf547b89a2f3a1c71a6d9df67p7@COL4A6
1.64e-33FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_6421159fe7980c6fe069e1822311ee6ep@chr12:105258734..105258750, +
1.64e-33FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_6421159fe7980c6fe069e1822311ee6ep@chr12:105258734..105258750, +
1.93e-33FFCP PHASE1:Hg19::chr9:12701203..12701216,+#_2b2a05c9f4c2b36cc654856f49ee5126p18@TYRP1
1.93e-33FFCP PHASE2:Hg19::chr9:12701203..12701216,+#_2b2a05c9f4c2b36cc654856f49ee5126p18@TYRP1
5.37e-32FFCP PHASE1:Hg19::chr2:188415649..188415664,-#_21927114c8b09ace8550c9257c6e68ccp@chr2:188415649..188415664, -
5.37e-32FFCP PHASE2:Hg19::chr2:188415649..188415664,-#_21927114c8b09ace8550c9257c6e68ccp@chr2:188415649..188415664, -
1.17e-31FFCP PHASE1:Hg19::chr2:102720962..102720971,+#_9abdc685ef4ca78f3350480966a18784p27@IL1R1
1.17e-31FFCP PHASE2:Hg19::chr2:102720962..102720971,+#_9abdc685ef4ca78f3350480966a18784p27@IL1R1
1.37e-31FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_0c1ec4a1dce447f1777be9708fad0b08p@chr13:94958134..94958164, +
1.37e-31FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_0c1ec4a1dce447f1777be9708fad0b08p@chr13:94958134..94958164, +
4.04e-31FFCP PHASE1:Hg19::chrX:47373179..47373190,-#_6c002c005f23a04f87b9411ae1e66ce0p2@NUS1P1
4.04e-31FFCP PHASE2:Hg19::chrX:47373179..47373190,-#_6c002c005f23a04f87b9411ae1e66ce0p2@NUS1P1
4.04e-31FFCP PHASE1:Hg19::chr16:89687026..89687041,+#_6c002c005f23a04f87b9411ae1e66ce0p7@DPEP1
4.04e-31FFCP PHASE2:Hg19::chr16:89687026..89687041,+#_6c002c005f23a04f87b9411ae1e66ce0p7@DPEP1
4.04e-31FFCP PHASE1:Hg19::chrX:119254455..119254468,+#_6c002c005f23a04f87b9411ae1e66ce0p1@ENST00000555831, p1@ENST00000557073
4.04e-31FFCP PHASE2:Hg19::chrX:119254455..119254468,+#_6c002c005f23a04f87b9411ae1e66ce0p1@ENST00000555831, p1@ENST00000557073
5.5e-31FFCP PHASE1:Hg19::chr14:52508902..52508921,-#_02a31fd852be38f2480eef73577a0f63p5@NID2
5.5e-31FFCP PHASE2:Hg19::chr14:52508902..52508921,-#_02a31fd852be38f2480eef73577a0f63p5@NID2
4.49e-30FFCP PHASE2:Hg19::chr17:6658878..6658889,+#_57467a9c812eb31f8e9680edc45caab3p9@XAF1
4.49e-30FFCP PHASE1:Hg19::chr17:6658878..6658889,+#_57467a9c812eb31f8e9680edc45caab3p9@XAF1
1.08e-29FFCP PHASE1:Hg19::chr5:121490583..121490596,-#_e06375713a29dc10442f4f4dd0bc3d20p1@ENST00000504829
1.08e-29FFCP PHASE2:Hg19::chr5:121490583..121490596,-#_e06375713a29dc10442f4f4dd0bc3d20p1@ENST00000504829
9.3e-29FFCP PHASE1:Hg19::chr2:121480592..121480601,+#_0c9d621eedc479456cdd0812b700ae06p@chr2:121480592..121480601, +
9.3e-29FFCP PHASE2:Hg19::chr2:121480592..121480601,+#_0c9d621eedc479456cdd0812b700ae06p@chr2:121480592..121480601, +
4.13e-28FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_8517081d94c95d1c4a50a1047520193bp5@NR1H4
4.13e-28FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_8517081d94c95d1c4a50a1047520193bp5@NR1H4
2.09e-27FFCP PHASE1:Hg19::chr10:102122643..102122654,+#_5f4f246096ed93d1a05bd97d622dee5cp@chr10:102122643..102122654, +
2.09e-27FFCP PHASE2:Hg19::chr10:102122643..102122654,+#_5f4f246096ed93d1a05bd97d622dee5cp@chr10:102122643..102122654, +
7.96e-27FFCP PHASE1:Hg19::chr12:10331605..10331616,+#_2a95d49c41b95fddff0ddae53a4212ecp5@C12orf59
7.96e-27FFCP PHASE2:Hg19::chr12:10331605..10331616,+#_2a95d49c41b95fddff0ddae53a4212ecp5@C12orf59