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(Created page with "{{CL |id=CL:0002319 |name=neural cell |namespace=cell |def="A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] |xref=FMA:70333 |is_a=CL:0000548;;CL:0...")
 
 
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{{CL
 
{{CL
|id=CL:0002319
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|alt_id=
|name=neural cell
 
|namespace=cell
 
|def="A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256]
 
|xref=FMA:70333
 
|is_a=CL:0000548;;CL:0002371
 
|synonym=
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=tmeehan
 
|created_by=tmeehan
|obo_creation_date=2010-09-15T01:34:57Z
+
|def="A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0002319
 +
|is_a=CL:0000548 ;;CL:0002371
 +
|is_obsolete=
 
|located_in=
 
|located_in=
|part_of=
+
|name=neural cell
 +
|namespace=FANTOM
 +
|obo_creation_date=2010-09-15T01:34:57Z
 +
|part_of=UBERON:0001016
 +
|preceded_by=
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
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|subset=
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|synonym=
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|union_of=
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|xref=FMA:70333
 
}}
 
}}

Latest revision as of 07:41, 12 September 2014

Name:neural cell
Namespace:FANTOM
Definition:"A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256]
Xrefs:
links:
FMA:70333
Created by:tmeehan
Creation date:2010-09-15T01:34:57Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000548(animal cell),CL:0002371(somatic cell)
part_of:UBERON:0001016(nervous system)



Children


is a:CL:0000047 (neuronal stem cell),CL:0000095 (neuron associated cell),CL:0000540 (neuron),CL:0000708 (leptomeningeal cell),CL:0000878 (central nervous system macrophage),CL:0002549 (fibroblast of choroid plexus),CL:0002575 (central nervous system pericyte),CL:0002576 (perineural cell),CL:0002590 (smooth muscle cell of the brain vasculature)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002319 (neural cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.05e-60FFCP PHASE1:Mm9::chr2:87366179..87366201,+#_0db4610fdaa50467f0e0100f2e6b7700p1@ENSMUST00000167296
2.05e-60FFCP PHASE2:Mm9::chr2:87366179..87366201,+#_0db4610fdaa50467f0e0100f2e6b7700p1@ENSMUST00000167296
1.37e-58FFCP PHASE2:Mm9::chr7:111031610..111031645,-#_6443b666190f2b1665a2103208e775afp1@ENSMUST00000120890
1.37e-58FFCP PHASE1:Mm9::chr7:111031610..111031645,-#_6443b666190f2b1665a2103208e775afp1@ENSMUST00000120890
1.5e-58FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_e4659718186748a6c9588e28b410bb2ap@chr5:135540733..135540788, -
1.5e-58FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_e4659718186748a6c9588e28b410bb2ap@chr5:135540733..135540788, -
2.74e-55FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_d4446d59e9c4e7ce1dcb0a98f1bcd490p@chr7:109167666..109167667, +
2.74e-55FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_d4446d59e9c4e7ce1dcb0a98f1bcd490p@chr7:109167666..109167667, +
1.24e-53FFCP PHASE1:Mm9::chr2:30663055..30663094,-#_963306a1b4cd6453d0ae2e1445dbf835p@chr2:30663055..30663094, -
1.24e-53FFCP PHASE2:Mm9::chr2:30663055..30663094,-#_963306a1b4cd6453d0ae2e1445dbf835p@chr2:30663055..30663094, -
6.23e-53FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_f45c90f5beefafb34d335b91795a90eap@chr8:125944624..125944663, +
6.23e-53FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_f45c90f5beefafb34d335b91795a90eap@chr8:125944624..125944663, +
4.11e-51FFCP PHASE1:Mm9::chr7:38554684..38554696,-#_67436e77896d41193ff4805d4bf2a6c9p10@Zfp536
4.11e-51FFCP PHASE2:Mm9::chr7:38554684..38554696,-#_67436e77896d41193ff4805d4bf2a6c9p10@Zfp536
8.93e-49FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_f89ca809f521e9c836d64e016b67236fp@chr13:9279895..9279899, +
8.93e-49FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_f89ca809f521e9c836d64e016b67236fp@chr13:9279895..9279899, +
1.03e-48FFCP PHASE1:Mm9::chr9:57389282..57389286,+#_cec1e802da7a25185e46c24e67ebf2dap@chr9:57389282..57389286, +
1.03e-48FFCP PHASE2:Mm9::chr9:57389282..57389286,+#_cec1e802da7a25185e46c24e67ebf2dap@chr9:57389282..57389286, +
1.34e-46FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_08fea83f2417af7cdf4faac694881e9ap@chr20:20472232..20472244, -
1.34e-46FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_08fea83f2417af7cdf4faac694881e9ap@chr20:20472232..20472244, -
8.95e-45FFCP PHASE1:Hg19::chr17:42988599..42988605,-#_93e6cbb7f56aab3d9599a79475293193p46@GFAP
8.95e-45FFCP PHASE2:Hg19::chr17:42988599..42988605,-#_93e6cbb7f56aab3d9599a79475293193p46@GFAP
4.36e-44FFCP PHASE2:Mm9::chr15:87454726..87454739,+#_a434c5e753be89e3915a2f77eda4bd42p@chr15:87454726..87454739, +
4.36e-44FFCP PHASE1:Mm9::chr15:87454726..87454739,+#_a434c5e753be89e3915a2f77eda4bd42p@chr15:87454726..87454739, +
4.38e-44FFCP PHASE2:Hg19::chr2:104096987..104096993,-#_764a9424577cb4e82ae955612105d95ep@chr2:104096987..104096993, -
4.38e-44FFCP PHASE1:Hg19::chr2:104096987..104096993,-#_764a9424577cb4e82ae955612105d95ep@chr2:104096987..104096993, -
8.82e-43FFCP PHASE1:Mm9::chr6:7933424..7933445,-#_11861c7d9dfd8a555d8b9e8535291dddp1@ENSMUST00000057757
8.82e-43FFCP PHASE2:Mm9::chr6:7933424..7933445,-#_11861c7d9dfd8a555d8b9e8535291dddp1@ENSMUST00000057757
1.12e-42FFCP PHASE1:Mm9::chr3:8545615..8545628,+#_f33b8f4d6d19f9fc6403fc3eaba6355cp@chr3:8545615..8545628, +
1.12e-42FFCP PHASE2:Mm9::chr3:8545615..8545628,+#_f33b8f4d6d19f9fc6403fc3eaba6355cp@chr3:8545615..8545628, +
1.26e-42FFCP PHASE2:Mm9::chr15:85465272..85465287,+#_2d6427e422afb6590b5fefcf592936a3p@chr15:85465272..85465287, +
1.26e-42FFCP PHASE1:Mm9::chr15:85465272..85465287,+#_2d6427e422afb6590b5fefcf592936a3p@chr15:85465272..85465287, +
2.13e-42FFCP PHASE1:Mm9::chr9:108998049..108998061,+#_f1691c21962da169fbfb7e322b3d74f7p5@Plxnb1
2.13e-42FFCP PHASE2:Mm9::chr9:108998049..108998061,+#_f1691c21962da169fbfb7e322b3d74f7p5@Plxnb1
2.79e-42FFCP PHASE1:Hg19::chr5:5140408..5140419,+#_873e1c67ac40ffcbd3f1d2fff1a34efap4@ADAMTS16
2.79e-42FFCP PHASE2:Hg19::chr5:5140408..5140419,+#_873e1c67ac40ffcbd3f1d2fff1a34efap4@ADAMTS16
4.12e-42FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_d3b52b4e502f63ea2310c4ed4d4082bep@chr11:30605486..30605499, -
4.12e-42FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_d3b52b4e502f63ea2310c4ed4d4082bep@chr11:30605486..30605499, -
5.89e-42FFCP PHASE2:Mm9::chr13:99383382..99383414,+#_324845806fbb677630dfc14cd4301e0cp@chr13:99383382..99383414, +
5.89e-42FFCP PHASE1:Mm9::chr13:99383382..99383414,+#_324845806fbb677630dfc14cd4301e0cp@chr13:99383382..99383414, +
1.08e-41FFCP PHASE1:Mm9::chr14:52533766..52533777,-#_eb95ae9c4474e5b2653f39f1c255afd2p@chr14:52533766..52533777, -
1.08e-41FFCP PHASE2:Mm9::chr14:52533766..52533777,-#_eb95ae9c4474e5b2653f39f1c255afd2p@chr14:52533766..52533777, -
3.34e-41FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_ce5105dbfbeefae34e09e3e73ae3241dp22@Zmiz1
3.34e-41FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_ce5105dbfbeefae34e09e3e73ae3241dp22@Zmiz1
7.99e-41FFCP PHASE1:Mm9::chr3:28664288..28664311,-#_aac482724b9464633cda887cb35a4946p1@LOC100505213
7.99e-41FFCP PHASE2:Mm9::chr3:28664288..28664311,-#_aac482724b9464633cda887cb35a4946p1@LOC100505213
2.91e-40FFCP PHASE2:Hg19::chr5:146939550..146939564,+#_ea58a154b731fc868dd7580e553dc28dp1@LOC153469
2.91e-40FFCP PHASE1:Hg19::chr5:146939550..146939564,+#_ea58a154b731fc868dd7580e553dc28dp1@LOC153469
3.72e-40FFCP PHASE2:Mm9::chr5:115940240..115940260,+#_a7c90d78aa5b825cee285aef0fdc6b10p1@ENSMUST00000101833
3.72e-40FFCP PHASE1:Mm9::chr5:115940240..115940260,+#_a7c90d78aa5b825cee285aef0fdc6b10p1@ENSMUST00000101833
5.93e-40FFCP PHASE2:Mm9::chr17:35137753..35137781,-#_5681600b2dbf34fe958a068be9deecb1p2@ENSMUST00000174517
5.93e-40FFCP PHASE1:Mm9::chr17:35137753..35137781,-#_5681600b2dbf34fe958a068be9deecb1p2@ENSMUST00000174517
7.88e-40FFCP PHASE2:Mm9::chr12:55340225..55340232,+#_6e234769b4c9817ed05ff5d47fa72654p1@ENSMUST00000082671
7.88e-40FFCP PHASE1:Mm9::chr12:55340225..55340232,+#_6e234769b4c9817ed05ff5d47fa72654p1@ENSMUST00000082671
1.37e-39FFCP PHASE1:Hg19::chr17:76266195..76266208,-#_2fb75e7e6099d2fc522b045ed22c9cf9p@chr17:76266195..76266208, -
1.37e-39FFCP PHASE2:Hg19::chr17:76266195..76266208,-#_2fb75e7e6099d2fc522b045ed22c9cf9p@chr17:76266195..76266208, -
3.64e-39FFCP PHASE1:Mm9::chr6:144996025..144996043,-#_49518cb3a9314eb71d0d2bc46091aa7cp7@Bcat1
3.64e-39FFCP PHASE2:Mm9::chr6:144996025..144996043,-#_49518cb3a9314eb71d0d2bc46091aa7cp7@Bcat1
5.84e-39FFCP PHASE2:Mm9::chr12:52941704..52941726,-#_198c53bfc78ae3a92bb91e0a0f4dc622p@chr12:52941704..52941726, -
5.84e-39FFCP PHASE1:Mm9::chr12:52941704..52941726,-#_198c53bfc78ae3a92bb91e0a0f4dc622p@chr12:52941704..52941726, -
7.13e-39FFCP PHASE1:Mm9::chr13:9277420..9277424,+#_784b23ca21f649790682bb040242c494p@chr13:9277420..9277424, +
7.13e-39FFCP PHASE2:Mm9::chr13:9277420..9277424,+#_784b23ca21f649790682bb040242c494p@chr13:9277420..9277424, +
2.89e-38FFCP PHASE2:Mm9::chr9:75414533..75414538,-#_4471482cd714b3ec1baed1065e4fe1f0p@chr9:75414533..75414538, -
2.89e-38FFCP PHASE1:Mm9::chr9:75414533..75414538,-#_4471482cd714b3ec1baed1065e4fe1f0p@chr9:75414533..75414538, -
5.48e-38FFCP PHASE2:Mm9::chr10:57504783..57504796,+#_432c67bc4f41433233a80d6f1b6178d1p4@Fabp7
5.48e-38FFCP PHASE1:Mm9::chr10:57504783..57504796,+#_432c67bc4f41433233a80d6f1b6178d1p4@Fabp7
6.91e-38FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_783375df5a37d9e601354a49a22af505p@chr8:125944694..125944740, +
6.91e-38FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_783375df5a37d9e601354a49a22af505p@chr8:125944694..125944740, +
6.94e-38FFCP PHASE1:Mm9::chrX:98615115..98615126,-#_374898bb851118fb0d9e68d54921b815p4@Zmym3
6.94e-38FFCP PHASE2:Mm9::chrX:98615115..98615126,-#_374898bb851118fb0d9e68d54921b815p4@Zmym3
7.21e-38FFCP PHASE2:Mm9::chr3:55849731..55849735,-#_d593e572716ba6e3bcefeab4b28bbf09p@chr3:55849731..55849735, -
7.21e-38FFCP PHASE1:Mm9::chr3:55849731..55849735,-#_d593e572716ba6e3bcefeab4b28bbf09p@chr3:55849731..55849735, -
4.92e-37FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_f7920b13ff242ad620275be20e08fc99p@chr4:169553987..169553999, +
4.92e-37FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_f7920b13ff242ad620275be20e08fc99p@chr4:169553987..169553999, +
5.28e-37FFCP PHASE2:Mm9::chr14:40284476..40284479,-#_75c1e56bcab70d2197ded6825c819162p@chr14:40284476..40284479, -
5.28e-37FFCP PHASE1:Mm9::chr14:40284476..40284479,-#_75c1e56bcab70d2197ded6825c819162p@chr14:40284476..40284479, -
1.07e-36FFCP PHASE1:Mm9::chr13:55584144..55584165,-#_a50bd35d6a4527d1bed21be5c8a7d86ap@chr13:55584144..55584165, -
1.07e-36FFCP PHASE2:Mm9::chr13:55584144..55584165,-#_a50bd35d6a4527d1bed21be5c8a7d86ap@chr13:55584144..55584165, -
1.25e-36FFCP PHASE2:Mm9::chr7:25284618..25284623,+#_e7f81171fbc29af008c406861a38fbf5p@chr7:25284618..25284623, +
1.25e-36FFCP PHASE1:Mm9::chr7:25284618..25284623,+#_e7f81171fbc29af008c406861a38fbf5p@chr7:25284618..25284623, +
1.37e-36FFCP PHASE2:Mm9::chr18:43504798..43504810,-#_9a8e5267253d239def81e2a6b8e9cd38p@chr18:43504798..43504810, -
1.37e-36FFCP PHASE1:Mm9::chr18:43504798..43504810,-#_9a8e5267253d239def81e2a6b8e9cd38p@chr18:43504798..43504810, -
1.67e-36FFCP PHASE2:Mm9::chr1:170361398..170361400,-#_115486f9451c3799d10b3d3e463cd191p@chr1:170361398..170361400, -
1.67e-36FFCP PHASE1:Mm9::chr1:170361398..170361400,-#_115486f9451c3799d10b3d3e463cd191p@chr1:170361398..170361400, -
1.76e-36FFCP PHASE1:Mm9::chr9:20550706..20550724,-#_7e396bf44fd3c5e45ff79f40068260eep@chr9:20550706..20550724, -
1.76e-36FFCP PHASE2:Mm9::chr9:20550706..20550724,-#_7e396bf44fd3c5e45ff79f40068260eep@chr9:20550706..20550724, -
2.14e-36FFCP PHASE2:Mm9::chr9:22577265..22577292,-#_190e49504cadd6d72531b4cc8cfe46f4p@chr9:22577265..22577292, -
2.14e-36FFCP PHASE1:Mm9::chr9:22577265..22577292,-#_190e49504cadd6d72531b4cc8cfe46f4p@chr9:22577265..22577292, -
2.44e-36FFCP PHASE1:Mm9::chr4:130168084..130168097,+#_b5e5c80d341a911194ddcd53bb18cad1p@chr4:130168084..130168097, +
2.44e-36FFCP PHASE2:Mm9::chr4:130168084..130168097,+#_b5e5c80d341a911194ddcd53bb18cad1p@chr4:130168084..130168097, +
2.55e-36FFCP PHASE1:Mm9::chr7:80554269..80554280,+#_4774996c604b90973da5802d3c6f13a1p@chr7:80554269..80554280, +
2.55e-36FFCP PHASE2:Mm9::chr7:80554269..80554280,+#_4774996c604b90973da5802d3c6f13a1p@chr7:80554269..80554280, +
6.36e-36FFCP PHASE2:Mm9::chr6:118147812..118147826,-#_9356344001d44f45069463450059d65cp4@Ret
6.36e-36FFCP PHASE1:Mm9::chr6:118147812..118147826,-#_9356344001d44f45069463450059d65cp4@Ret
9.13e-36FFCP PHASE1:Mm9::chr6:78861159..78861164,+#_2c5743b4dc13b1d6d3f2b22022edff31p1@ENSMUST00000083352
9.13e-36FFCP PHASE2:Mm9::chr6:78861159..78861164,+#_2c5743b4dc13b1d6d3f2b22022edff31p1@ENSMUST00000083352
9.4e-36FFCP PHASE2:Mm9::chr4:39206823..39206829,-#_d44a37db67fc11f120ae5e58679273adp1@ENSMUST00000083410
9.4e-36FFCP PHASE1:Mm9::chr4:39206823..39206829,-#_d44a37db67fc11f120ae5e58679273adp1@ENSMUST00000083410
1.55e-35FFCP PHASE1:Mm9::chr16:73045578..73045594,+#_32fe0400de18b384f323835c0e945788p@chr16:73045578..73045594, +
1.55e-35FFCP PHASE2:Mm9::chr16:73045578..73045594,+#_32fe0400de18b384f323835c0e945788p@chr16:73045578..73045594, +