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CL:0002322

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Name:embryonic stem cell
Namespace:FANTOM
Definition:"A stem cell of embryonic origin." [GOC:dsd, GOC:tfm, ISBN:068340007X, PMID:18179856]
Xrefs:
links:

BTO:0001086

FMA:82841
Synonyms: "ESC" EXACT []
Comments:This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive.
Created by:tmeehan
Creation date:2010-09-15T03:44:35Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000034(stem cell),CL:0002321(embryonic cell)



Children


derives from:FF:0101581 (embryonic stem cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
  • 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
  • 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
  • 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
  • 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
  • 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
  • 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
  • 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
  • 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
  • 12635-134F7 (H9 Embryoid body cells, melanocytic induction)

... further results Mouse (Mus musculus)

  • 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
  • 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
  • 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
  • 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
  • 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
  • 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
  • 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
  • 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
  • 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
  • 12635-134F7 (H9 Embryoid body cells, melanocytic induction)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002322 (embryonic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.45e-195FFCP PHASE2:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp@chr3:112145303..112145318, -
2.45e-195FFCP PHASE2:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp3@ENST00000554286
2.45e-195FFCP PHASE1:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp2@ENST00000443844
2.45e-195FFCP PHASE1:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp3@ENST00000554286
2.45e-195FFCP PHASE2:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp2@ENST00000443844
2.45e-195FFCP PHASE1:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfabp@chr3:112145303..112145318, -
2.34e-163FFCP PHASE1:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7p5@LECT1
2.34e-163FFCP PHASE1:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7p2@ENST00000554286
2.34e-163FFCP PHASE1:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7p1@ENST00000554286
2.34e-163FFCP PHASE2:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7p5@LECT1
2.34e-163FFCP PHASE2:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7p2@ENST00000554286
2.34e-163FFCP PHASE2:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7p1@ENST00000554286
3.28e-163FFCP PHASE1:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5p3@ENST00000456949
3.28e-163FFCP PHASE2:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5p3@ENST00000456949
1.5e-156FFCP PHASE1:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr2:233286046..233286057, -
1.5e-156FFCP PHASE1:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr19:19748353..19748362, -
1.5e-156FFCP PHASE2:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr2:233286046..233286057, -
1.5e-156FFCP PHASE2:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3p@chr19:19748353..19748362, -
1.65e-140FFCP PHASE1:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7p@chr14:47573982..47573999, +
1.65e-140FFCP PHASE1:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7p1@ENST00000443844
1.65e-140FFCP PHASE2:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7p@chr14:47573982..47573999, +
1.65e-140FFCP PHASE2:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7p1@ENST00000443844
2.94e-140FFCP PHASE1:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461p@chr14:96459422..96459424, -
2.94e-140FFCP PHASE2:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461p@chr14:96459422..96459424, -
5.23e-140FFCP PHASE1:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fcp5@DPPA4
5.23e-140FFCP PHASE2:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fcp5@DPPA4
9.29e-140FFCP PHASE1:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5p@chr7:125564060..125564062, +
9.29e-140FFCP PHASE2:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5p@chr7:125564060..125564062, +
1.71e-125FFCP PHASE2:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8p@chrX:16595231..16595235, +
1.71e-125FFCP PHASE1:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8p@chrX:16595231..16595235, +
6.25e-123FFCP PHASE1:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936p@chr19:55603889..55603900, -
6.25e-123FFCP PHASE2:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936p@chr19:55603889..55603900, -
1.03e-122FFCP PHASE2:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aaep@chr3:109045929..109045945, -
1.03e-122FFCP PHASE1:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aaep@chr3:109045929..109045945, -
2.83e-122FFCP PHASE1:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527p16@ETV5
2.83e-122FFCP PHASE2:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527p16@ETV5
3.64e-122FFCP PHASE2:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8p@chr5:12625067..12625085, +
3.64e-122FFCP PHASE1:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8p@chr5:12625067..12625085, +
4.68e-122FFCP PHASE1:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98p@chr2:210073840..210073851, -
4.68e-122FFCP PHASE2:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98p@chr2:210073840..210073851, -
7.72e-122FFCP PHASE1:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fdp1@HOXB1
7.72e-122FFCP PHASE2:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fdp1@HOXB1
7.76e-118FFCP PHASE2:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1fp4@ENST00000554286
7.76e-118FFCP PHASE1:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1fp4@ENST00000554286
1.21e-109FFCP PHASE2:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26p@chr2:233285967..233285976, -
1.21e-109FFCP PHASE1:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26p@chr10:58982431..58982442, -
1.21e-109FFCP PHASE2:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26p@chr10:58982431..58982442, -
1.21e-109FFCP PHASE1:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26p@chr2:233285930..233285938, -
1.21e-109FFCP PHASE2:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26p@chr2:233285930..233285938, -
1.21e-109FFCP PHASE1:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26p@chr2:233285967..233285976, -
1.51e-109FFCP PHASE1:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95p@chr10:135042855..135042873, +
1.51e-109FFCP PHASE2:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95p@chr10:135042855..135042873, +
1.51e-109FFCP PHASE2:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95p@chrX:16594524..16594529, +
1.51e-109FFCP PHASE1:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95p@chr2:233285898..233285907, -
1.51e-109FFCP PHASE2:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95p@chr2:233285898..233285907, -
1.51e-109FFCP PHASE1:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95p@chrX:16594524..16594529, +
2.37e-109FFCP PHASE2:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328p7@USP44
2.37e-109FFCP PHASE1:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328p@chr13:56156997..56157026, -
2.37e-109FFCP PHASE1:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328p@chr19:36164312..36164325, +
2.37e-109FFCP PHASE1:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328p7@USP44
2.37e-109FFCP PHASE2:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328p@chr19:36164312..36164325, +
2.37e-109FFCP PHASE2:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328p@chr13:56156997..56157026, -
7.24e-109FFCP PHASE1:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325dp@chr2:8016767..8016785, +
7.24e-109FFCP PHASE2:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325dp@chr2:8016767..8016785, +
7.24e-109FFCP PHASE1:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325dp@chrX:33101294..33101324, -
7.24e-109FFCP PHASE2:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325dp@chrX:33101294..33101324, -
9.05e-109FFCP PHASE1:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473fp2@VENTX
9.05e-109FFCP PHASE2:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473fp2@VENTX
9.05e-109FFCP PHASE1:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473fp@chr2:233285959..233285964, -
9.05e-109FFCP PHASE2:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473fp@chr2:233285959..233285964, -
1.13e-108FFCP PHASE2:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721532..59721540, -
1.13e-108FFCP PHASE1:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151bp@chr20:12735430..12735434, +
1.13e-108FFCP PHASE2:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721677..59721683, -
1.13e-108FFCP PHASE1:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721532..59721540, -
1.13e-108FFCP PHASE2:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151bp@chr20:12735430..12735434, +
1.13e-108FFCP PHASE1:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151bp@chr12:59721677..59721683, -
1.77e-108FFCP PHASE2:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296p@chr12:97858979..97858990, +
1.77e-108FFCP PHASE1:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296p@chr12:97858979..97858990, +
2.76e-108FFCP PHASE2:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305p@chr4:187168395..187168407, -
2.76e-108FFCP PHASE1:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305p@chr4:187168395..187168407, -
4.31e-108FFCP PHASE2:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360p@chr4:187163408..187163430, +
4.31e-108FFCP PHASE1:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360p@chr4:187163408..187163430, +
3.96e-105FFCP PHASE2:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2fp@chr19:56163789..56163799, +
3.96e-105FFCP PHASE1:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2fp@chr19:56163789..56163799, +
5.18e-105FFCP PHASE1:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862p@chrX:16186799..16186803, -
5.18e-105FFCP PHASE2:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862p@chrX:16186799..16186803, -
8.85e-105FFCP PHASE1:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63ap4@WNT1
8.85e-105FFCP PHASE2:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63ap4@WNT1
2.58e-104FFCP PHASE2:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874p22@EHBP1
2.58e-104FFCP PHASE1:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874p22@EHBP1
2.3e-99FFCP PHASE1:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9p1@ENST00000519695, p1@ENST00000524275
2.3e-99FFCP PHASE2:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9p1@ENST00000519695, p1@ENST00000524275
4.22e-99FFCP PHASE1:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261cp4@LECT1
4.22e-99FFCP PHASE2:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261cp4@LECT1
6.32e-99FFCP PHASE1:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5p@chr18:29399308..29399314, +
6.32e-99FFCP PHASE1:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5p@chr3:32858527..32858538, +
6.32e-99FFCP PHASE2:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5p@chr18:29399308..29399314, +
6.32e-99FFCP PHASE2:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5p@chr3:32858527..32858538, +
9.46e-99FFCP PHASE1:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9p@chr6:131624969..131624980, +
9.46e-99FFCP PHASE2:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9p@chr6:131624969..131624980, +