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Difference between revisions of "CL:1000449"

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|located_in=
 
|located_in=
 
|name=epithelial cell of nephron
 
|name=epithelial cell of nephron
|namespace=cell
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0001285
 
|part_of=UBERON:0001285

Latest revision as of 07:47, 12 September 2014

Name:epithelial cell of nephron
Namespace:FANTOM
Definition:"An epithelial cell that is part of the nephron." [GOC:tfm]
Xrefs:
links:
FMA:70965


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002518(kidney epithelial cell)
part_of:UBERON:0001285(nephron)



Children


is a:CL:1000494 (nephron tubule epithelial cell),CL:1000612 (kidney corpuscule cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000449 (epithelial cell of nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.05e-87FFCP PHASE1:Hg19::chr2:693380..693398,+#_21d2124265e362780e65dd28bede4d16p@chr2:693380..693398, +
1.05e-87FFCP PHASE2:Hg19::chr2:693380..693398,+#_21d2124265e362780e65dd28bede4d16p@chr2:693380..693398, +
1.72e-83FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_02fccce59626be9b9b2c6645f5d4f63fp4@MEGF11
1.72e-83FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_02fccce59626be9b9b2c6645f5d4f63fp4@MEGF11
2.2e-74FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_6146b58c794828c15a96eef40f17e4f3p7@HOXA10
2.2e-74FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_6146b58c794828c15a96eef40f17e4f3p7@HOXA10
7.63e-66FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_7d35d2dbde82d397c65052cddacbc765p@chr1:1100457..1100470, +
7.63e-66FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_7d35d2dbde82d397c65052cddacbc765p@chr1:1100457..1100470, +
6.44e-62FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_6948ce0bb46c35da845a8f7cc7143bdfp4@PAX2
6.44e-62FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_6948ce0bb46c35da845a8f7cc7143bdfp4@PAX2
5.84e-60FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_dedfd13e650bfc46f836ab9c92aa560fp@chr18:3456189..3456200, +
5.84e-60FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_dedfd13e650bfc46f836ab9c92aa560fp@chr18:3456189..3456200, +
6.18e-60FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_7c2df668fef5bc0ff652ac0871b3339bp3@PAX2
6.18e-60FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_7c2df668fef5bc0ff652ac0871b3339bp3@PAX2
4.45e-59FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_862fd14119f0e2fb30b4ca95bd6f30c3p6@LRRN4
4.45e-59FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_862fd14119f0e2fb30b4ca95bd6f30c3p6@LRRN4
3.49e-58FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_423b82c67640fdd46304b8ab9281608cp@chr5:74244100..74244117, +
3.49e-58FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_423b82c67640fdd46304b8ab9281608cp@chr5:74244100..74244117, +
3.91e-56FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_16d6b4e7014cbbbf1400b4a73b2398adp2@AB527789
3.91e-56FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_16d6b4e7014cbbbf1400b4a73b2398adp2@AB527789
3.83e-55FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_c35a44731a78a0737ec88ce7e03955dep@chr16:86604624..86604648, +
3.83e-55FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_c35a44731a78a0737ec88ce7e03955dep@chr16:86604624..86604648, +
3.51e-54FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_2dac940c2376bd4d5b3bec487403b70ap@chr16:86768403..86768437, +
3.51e-54FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_2dac940c2376bd4d5b3bec487403b70ap@chr16:86768403..86768437, +
6.09e-53FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_06b5d8ef900eb4af69dd4e48cf2c4560p2@CLDN6
6.09e-53FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_06b5d8ef900eb4af69dd4e48cf2c4560p2@CLDN6
2.79e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_bf82b584c9edf3bedfee06960b931eedp1@ENST00000418041, p1@ENST00000443104
2.79e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_bf82b584c9edf3bedfee06960b931eedp1@ENST00000418041, p1@ENST00000443104
1.61e-50FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_676a5c3e1ccf0e6894a968d68cd88725p@chr7:7606139..7606151, -
1.61e-50FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_676a5c3e1ccf0e6894a968d68cd88725p@chr7:7606139..7606151, -
1.96e-50FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_036b4dcb062cdcde23f7642c3eff106ap3@HNF1B
1.96e-50FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_036b4dcb062cdcde23f7642c3eff106ap3@HNF1B
1.73e-49FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_7dbf1e3f5062bf3faf19bb6ea7aaa22cp@chr7:140227349..140227360, -
1.73e-49FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_7dbf1e3f5062bf3faf19bb6ea7aaa22cp@chr7:140227349..140227360, -
2.61e-49FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_d201995393f9983d383eec2c945e8c91p16@HOXA10
2.61e-49FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_d201995393f9983d383eec2c945e8c91p16@HOXA10
3.13e-49FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_597a4948ae08e2c1b6cead992e98bb8ep2@B3GALT5
3.13e-49FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_597a4948ae08e2c1b6cead992e98bb8ep2@B3GALT5
4.07e-49FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_30934a3d97786b428adcc35c2b345d0dp4@AIF1L
4.07e-49FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_30934a3d97786b428adcc35c2b345d0dp4@AIF1L
1.12e-47FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_66cd2bc70328f3102e932d108b81a278p@chr7:140227303..140227330, -
1.12e-47FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_66cd2bc70328f3102e932d108b81a278p@chr7:140227303..140227330, -
1.23e-44FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_6a20260613e126bc3070dc55bbf061f1p3@LRRN4
1.23e-44FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_6a20260613e126bc3070dc55bbf061f1p3@LRRN4
3.62e-44FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_62af534b5d359c901c0d1dfe85eb4717p@chr21:46826248..46826282, -
3.62e-44FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_62af534b5d359c901c0d1dfe85eb4717p@chr21:46826248..46826282, -
3.06e-43FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_44b7ad1680199e30bf348330d38f91bap2@LRRN4
3.06e-43FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_44b7ad1680199e30bf348330d38f91bap2@LRRN4
1.81e-42FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_c9d2b32d8236418d883fc4c2515954eap@chr15:85403302..85403304, +
1.81e-42FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_c9d2b32d8236418d883fc4c2515954eap@chr15:85403302..85403304, +
1.82e-42FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_c95978b0f53ead40185d33ad6d36f772p@chr7:98453821..98453843, -
1.82e-42FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_c95978b0f53ead40185d33ad6d36f772p@chr7:98453821..98453843, -
2.77e-42FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_4255444723d044fdaa388aa0aa38a962p7@LRRN4
2.77e-42FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_4255444723d044fdaa388aa0aa38a962p7@LRRN4
7.5e-42FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_3613e3e1bcfb4d73c4670e1b09a99d44p2@PAX2
7.5e-42FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_3613e3e1bcfb4d73c4670e1b09a99d44p2@PAX2
3.59e-41FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_00b783b29967ca429790d4f68e4d6e61p16@TJP2
3.59e-41FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_00b783b29967ca429790d4f68e4d6e61p16@TJP2
9.39e-41FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2d47762242437cece4c0192b35881dfbp1@ENST00000413103
9.39e-41FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2d47762242437cece4c0192b35881dfbp1@ENST00000413103
1.7e-40FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_e397d69dc1b45bf8fe9c0132897ca1fap5@LRRN4
1.7e-40FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_e397d69dc1b45bf8fe9c0132897ca1fap5@LRRN4
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_dc134a6e0669dc2c0bb4abd19bfbeeb1p2@PLA2G2F
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_dc134a6e0669dc2c0bb4abd19bfbeeb1p2@PLA2G2F
8.58e-40FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_fbab7bebbec0dbc358e5081e8540b16bp3@AIF1L
8.58e-40FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_fbab7bebbec0dbc358e5081e8540b16bp3@AIF1L
1.21e-39FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_f2dbffc1eccd94a88ef4d7903aabb6fep6@GALNT14
1.21e-39FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_f2dbffc1eccd94a88ef4d7903aabb6fep6@GALNT14
3.08e-39FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_e4a45e7ad2bcabaeee3231df16c8956fp4@AB527789
3.08e-39FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_e4a45e7ad2bcabaeee3231df16c8956fp4@AB527789
7.42e-37FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_e988ee673f1736b22d4c24d13c1c07d4p4@DCDC2
7.42e-37FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_e988ee673f1736b22d4c24d13c1c07d4p4@DCDC2
1.29e-36FFCP PHASE1:Hg19::chr2:693362..693373,+#_45b3f20f3cc985874316a49883296efbp@chr2:693362..693373, +
1.29e-36FFCP PHASE2:Hg19::chr2:693362..693373,+#_45b3f20f3cc985874316a49883296efbp@chr2:693362..693373, +
1.36e-36FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_dfb5485a39d3db10a8b0ee8f255274e6p1@HOXD4
1.36e-36FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_dfb5485a39d3db10a8b0ee8f255274e6p1@HOXD4
6.21e-36FFCP PHASE1:Hg19::chr2:176982078..176982095,+#_68735ce16409451f8eb30e4ddbe62d85p@chr2:176982078..176982095, +
6.21e-36FFCP PHASE2:Hg19::chr2:176982078..176982095,+#_68735ce16409451f8eb30e4ddbe62d85p@chr2:176982078..176982095, +
2.64e-35FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_970973f079d155f1cedea67897f3cbcap1@AB527789
2.64e-35FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_970973f079d155f1cedea67897f3cbcap1@AB527789
3.85e-35FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_dde15ea1e8ca5be3e4082a1e088680aep3@SULT1C4
3.85e-35FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_dde15ea1e8ca5be3e4082a1e088680aep3@SULT1C4
8.14e-35FFCP PHASE2:Hg19::chr18:43405633..43405645,+#_9a520a51f615421e427f6de233981253p4@SIGLEC15
8.14e-35FFCP PHASE1:Hg19::chr18:43405633..43405645,+#_9a520a51f615421e427f6de233981253p4@SIGLEC15
1.65e-34FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_9cb81e0c5f65dd07432306ca90ff1760p1@ENST00000444849
1.65e-34FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_9cb81e0c5f65dd07432306ca90ff1760p1@ENST00000444849
1.14e-33FFCP PHASE2:Hg19::chr17:171147..171161,+#_270893abd0519f9e527c54b7201180b8p@chr17:171147..171161, +
1.14e-33FFCP PHASE1:Hg19::chr17:171147..171161,+#_270893abd0519f9e527c54b7201180b8p@chr17:171147..171161, +
1.52e-33FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_1cd2eadbb7260b1a7534c38b384f0506p2@C14orf105
1.52e-33FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_1cd2eadbb7260b1a7534c38b384f0506p2@C14orf105
1.8e-33FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_d51f1ca150839db43f735fe2308b31b7p5@GALNT14
1.8e-33FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_d51f1ca150839db43f735fe2308b31b7p5@GALNT14
2.35e-33FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_c053d16d027753bad5ec14df07794f7ap1@CLDN16
2.35e-33FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_c053d16d027753bad5ec14df07794f7ap1@CLDN16
4.12e-33FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_a7e242e90238b903008369a880d4400bp@chr17:36065029..36065045, -
4.12e-33FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_a7e242e90238b903008369a880d4400bp@chr17:36065029..36065045, -
8.12e-33FFCP PHASE2:Hg19::chr17:35293950..35293973,-#_5b5c30618de4acf11d6b3b19059ea9cbp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
8.12e-33FFCP PHASE1:Hg19::chr17:35293950..35293973,-#_5b5c30618de4acf11d6b3b19059ea9cbp1@ENST00000528383, p1@ENST00000529264, p1@ENST00000532387
1.25e-32FFCP PHASE1:Hg19::chr22:30653574..30653606,-#_21e113fa78452e955e1a9cbddb2eed4ep@chr22:30653574..30653606, -
1.25e-32FFCP PHASE2:Hg19::chr22:30653574..30653606,-#_21e113fa78452e955e1a9cbddb2eed4ep@chr22:30653574..30653606, -