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Coexpression cluster:C129

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Full id: C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small



Phase1 CAGE Peaks

Hg19::chr10:109856810..109856815,+p@chr10:109856810..109856815
+
Hg19::chr10:118342385..118342386,-p@chr10:118342385..118342386
-
Hg19::chr10:22046872..22046874,+p@chr10:22046872..22046874
+
Hg19::chr10:54531372..54531384,-p1@MBL2
Hg19::chr10:54531406..54531426,-p2@MBL2
Hg19::chr10:74653492..74653504,+p4@OIT3
Hg19::chr10:74653506..74653521,+p1@OIT3
Hg19::chr10:74653522..74653535,+p2@OIT3
Hg19::chr10:74653538..74653547,+p5@OIT3
Hg19::chr10:91403625..91403649,-p4@PANK1
Hg19::chr10:95351747..95351759,+p2@CU676593
Hg19::chr10:95351763..95351773,+p3@CU676593
Hg19::chr11:116700614..116700631,+p1@APOC3
Hg19::chr11:116701496..116701523,+p@chr11:116701496..116701523
+
Hg19::chr11:116701530..116701546,+p@chr11:116701530..116701546
+
Hg19::chr11:116703597..116703615,+p5@APOC3
Hg19::chr11:116703645..116703664,-p@chr11:116703645..116703664
-
Hg19::chr11:116706805..116706829,-p@chr11:116706805..116706829
-
Hg19::chr11:116706945..116706953,-p@chr11:116706945..116706953
-
Hg19::chr11:116706961..116706976,-p@chr11:116706961..116706976
-
Hg19::chr11:116706971..116706988,+p1@DQ656025
Hg19::chr11:116707091..116707117,-p@chr11:116707091..116707117
-
Hg19::chr11:116708330..116708347,-p1@APOA1
Hg19::chr11:2018018..2018021,-p2@MIR675
Hg19::chr11:2162543..2162562,-p61@IGF2
Hg19::chr11:63137251..63137267,+p1@SLC22A9
Hg19::chr12:104866693..104866694,+p@chr12:104866693..104866694
+
Hg19::chr12:4488872..4488879,-p1@FGF23
Hg19::chr12:56881993..56882009,-p5@GLS2
Hg19::chr12:6927703..6927726,+p@chr12:6927703..6927726
+
Hg19::chr12:6927729..6927757,+p@chr12:6927729..6927757
+
Hg19::chr12:96389702..96389722,-p1@HAL
Hg19::chr13:41363739..41363753,+p2@SLC25A15
Hg19::chr13:41455066..41455070,-p@chr13:41455066..41455070
-
Hg19::chr14:94844000..94844007,-p@chr14:94844000..94844007
-
Hg19::chr14:94844867..94844883,+p2@CU680153
Hg19::chr14:94844932..94844943,-p30@SERPINA1
Hg19::chr14:94845856..94845857,-p43@SERPINA1
Hg19::chr14:94849340..94849371,+p@chr14:94849340..94849371
+
Hg19::chr14:94849372..94849459,+p@chr14:94849372..94849459
+
Hg19::chr15:102028948..102028954,+p@chr15:102028948..102028954
+
Hg19::chr15:41548892..41548919,+p9@CHP
Hg19::chr15:51610687..51610695,-p4@CYP19A1
Hg19::chr15:58724170..58724183,+p3@LIPC
Hg19::chr15:58724184..58724197,+p2@LIPC
Hg19::chr15:81611633..81611637,-p@chr15:81611633..81611637
-
Hg19::chr16:51593720..51593721,-p@chr16:51593720..51593721
-
Hg19::chr16:56666563..56666580,+p2@MT1M
Hg19::chr16:56677565..56677579,+p2@MT1DP
Hg19::chr16:56685796..56685801,+p1@MT1B
Hg19::chr16:56691887..56691909,+p1@MT1F
Hg19::chr16:56700715..56700727,-p@chr16:56700715..56700727
-
Hg19::chr16:56700737..56700752,+p@chr16:56700737..56700752
+
Hg19::chr16:56701968..56701983,-p1@MT1G
Hg19::chr16:56703761..56703789,+p2@MT1H
Hg19::chr16:76566169..76566180,-p@chr16:76566169..76566180
-
Hg19::chr17:36860807..36860829,-p@chr17:36860807..36860829
-
Hg19::chr17:4692230..4692265,+p1@GLTPD2
Hg19::chr17:4692269..4692278,+p6@GLTPD2
Hg19::chr17:4692335..4692344,+p3@GLTPD2
Hg19::chr17:4692350..4692364,+p2@GLTPD2
Hg19::chr17:7018100..7018111,-p4@ASGR2
Hg19::chr17:7960200..7960204,+p1@uc002gjx.1
Hg19::chr18:56067319..56067325,-p@chr18:56067319..56067325
-
Hg19::chr19:11350278..11350302,+p1@C19orf80
Hg19::chr19:45451955..45451977,+p5@APOC2
Hg19::chr19:6712541..6712560,+p@chr19:6712541..6712560
+
Hg19::chr19:6718256..6718299,+p@chr19:6718256..6718299
+
Hg19::chr19:6719228..6719237,+p@chr19:6719228..6719237
+
Hg19::chr19:6719256..6719265,-p@chr19:6719256..6719265
-
Hg19::chr19:6719365..6719380,+p@chr19:6719365..6719380
+
Hg19::chr1:120311553..120311555,-p2@HMGCS2
Hg19::chr1:161192171..161192185,-p@chr1:161192171..161192185
-
Hg19::chr1:161192276..161192297,-p@chr1:161192276..161192297
-
Hg19::chr1:16410268..16410271,-p@chr1:16410268..16410271
-
Hg19::chr1:207262540..207262551,+p13@C4BPB
Hg19::chr1:207262571..207262574,+p19@C4BPB
Hg19::chr1:230839071..230839081,-p@chr1:230839071..230839081
-
Hg19::chr1:230840033..230840046,+p@chr1:230840033..230840046
+
Hg19::chr1:230841888..230841906,-p@chr1:230841888..230841906
-
Hg19::chr1:230841927..230841948,-p@chr1:230841927..230841948
-
Hg19::chr1:230845912..230845927,-p@chr1:230845912..230845927
-
Hg19::chr1:230846000..230846009,-p@chr1:230846000..230846009
-
Hg19::chr1:230846364..230846384,+p1@M26228
Hg19::chr1:230846397..230846417,-p2@AGT
Hg19::chr1:230849858..230849875,-p1@AGT
Hg19::chr1:48121226..48121227,+p@chr1:48121226..48121227
+
Hg19::chr1:80339337..80339339,+p@chr1:80339337..80339339
+
Hg19::chr20:36956110..36956113,-p@chr20:36956110..36956113
-
Hg19::chr20:4163964..4164001,+p@chr20:4163964..4164001
+
Hg19::chr22:26921050..26921055,+p@chr22:26921050..26921055
+
Hg19::chr22:30953574..30953584,-p13@GAL3ST1
Hg19::chr22:30953587..30953595,-p15@GAL3ST1
Hg19::chr22:37505474..37505478,-p3@TMPRSS6
Hg19::chr2:164347637..164347639,-p@chr2:164347637..164347639
-
Hg19::chr2:211542816..211542823,+p@chr2:211542816..211542823
+
Hg19::chr2:21234737..21234744,-p116@APOB
Hg19::chr2:21256354..21256359,-p@chr2:21256354..21256359
-
Hg19::chr2:21257701..21257711,+p@chr2:21257701..21257711
+
Hg19::chr2:21260016..21260042,+p@chr2:21260016..21260042
+
Hg19::chr2:21265277..21265305,+p@chr2:21265277..21265305
+
Hg19::chr2:234959355..234959371,+p2@SPP2
Hg19::chr2:234959376..234959402,+p1@SPP2
Hg19::chr2:241808165..241808178,+p2@AGXT
Hg19::chr2:97216094..97216105,+p@chr2:97216094..97216105
+
Hg19::chr3:133473408..133473419,+p10@TF
Hg19::chr3:142682480..142682497,-p3@PAQR9
Hg19::chr3:186330841..186330863,+p1@AHSG
Hg19::chr3:186333534..186333545,+p@chr3:186333534..186333545
+
Hg19::chr3:186334990..186335031,+p@chr3:186334990..186335031
+
Hg19::chr3:186335044..186335062,+p@chr3:186335044..186335062
+
Hg19::chr3:186336312..186336319,+p@chr3:186336312..186336319
+
Hg19::chr3:186338441..186338458,+p@chr3:186338441..186338458
+
Hg19::chr3:186338947..186338958,+p@chr3:186338947..186338958
+
Hg19::chr3:186338971..186338979,+p@chr3:186338971..186338979
+
Hg19::chr3:32280051..32280087,-p1@BC035064
Hg19::chr3:52821910..52821922,+p6@ITIH1
Hg19::chr4:74274493..74274496,+p45@ALB
Hg19::chr4:74283355..74283358,-p@chr4:74283355..74283358
-
Hg19::chr4:74319533..74319551,+p@chr4:74319533..74319551
+
Hg19::chr5:126215130..126215131,+p@chr5:126215130..126215131
+
Hg19::chr5:132209353..132209366,+p1@LEAP2
Hg19::chr6:43027721..43027733,+p5@KLC4
Hg19::chr6:5085572..5085576,+p2@PPP1R3G
Hg19::chr7:100238869..100238883,-p@chr7:100238869..100238883
-
Hg19::chr7:45928132..45928134,+p11@IGFBP1
Hg19::chr7:99332815..99332820,-p1@CYP3A7
p2@CYP3A5
Hg19::chr8:28244374..28244382,-p26@ZNF395
Hg19::chr9:104145795..104145806,-p4@BAAT
Hg19::chr9:107666048..107666061,-p7@ABCA1
Hg19::chr9:116823375..116823380,-p7@AMBP
Hg19::chr9:4839762..4839779,+p6@RCL1
Hg19::chr9:4839818..4839828,+p8@RCL1
Hg19::chrX:105251903..105251912,-p@chrX:105251903..105251912
-
Hg19::chrX:108976521..108976545,-p3@ACSL4
Hg19::chrX:132670143..132670152,-p@chrX:132670143..132670152
-
Hg19::chrX:132670211..132670224,-p@chrX:132670211..132670224
-
Hg19::chrX:153769409..153769421,+p15@IKBKG
Hg19::chrX:49832232..49832267,+p5@CLCN5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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