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Coexpression cluster:C134

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Full id: C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis



Phase1 CAGE Peaks

Hg19::chr10:75391836..75391847,-p@chr10:75391836..75391847
-
Hg19::chr11:111783450..111783475,+p1@C11orf52
p1@HSPB2-C11orf52
p1@HSPB2
Hg19::chr11:111783485..111783497,+p2@HSPB2-C11orf52
Hg19::chr11:111783512..111783526,+p3@HSPB2-C11orf52
Hg19::chr11:1942566..1942578,+p14@TNNT3
Hg19::chr11:1942580..1942639,+p2@TNNT3
Hg19::chr11:1942642..1942649,+p13@TNNT3
Hg19::chr11:19835258..19835277,+p@chr11:19835258..19835277
+
Hg19::chr11:2170786..2170809,-p66@IGF2
Hg19::chr11:47206965..47206974,-p9@PACSIN3
Hg19::chr11:66633918..66633936,-p@chr11:66633918..66633936
-
Hg19::chr11:9450312..9450317,+p1@SNORA23
Hg19::chr12:3068942..3068953,+p13@TEAD4
Hg19::chr12:56548579..56548595,+p@chr12:56548579..56548595
+
Hg19::chr12:57112913..57112922,-p@chr12:57112913..57112922
-
Hg19::chr12:57114812..57114823,-p@chr12:57114812..57114823
-
Hg19::chr12:57115086..57115092,-p@chr12:57115086..57115092
-
Hg19::chr14:101356593..101356602,-p@chr14:101356593..101356602
-
Hg19::chr14:24600866..24600882,+p2@FITM1
Hg19::chr14:24601686..24601718,+p6@FITM1
Hg19::chr14:81916474..81916483,-p3@ENST00000555001
Hg19::chr14:81916503..81916517,-p1@ENST00000555001
Hg19::chr14:94423318..94423330,-p12@ASB2
Hg19::chr15:42651691..42651715,+p2@CAPN3
Hg19::chr15:77089901..77089941,-p@chr15:77089901..77089941
-
Hg19::chr16:30383613..30383616,+p@chr16:30383613..30383616
+
Hg19::chr16:30384030..30384072,+p@chr16:30384030..30384072
+
Hg19::chr16:30387474..30387490,+p@chr16:30387474..30387490
+
Hg19::chr16:30389152..30389161,+p23@ZNF48
Hg19::chr16:47430125..47430142,-p9@ITFG1
Hg19::chr16:67426950..67426958,-p@chr16:67426950..67426958
-
Hg19::chr16:67427030..67427043,-p@chr16:67427030..67427043
-
Hg19::chr16:89238149..89238187,+p1@CDH15
Hg19::chr16:89238188..89238199,+p3@CDH15
Hg19::chr16:89238212..89238224,+p2@CDH15
Hg19::chr17:10299730..10299770,-p@chr17:10299730..10299770
-
Hg19::chr17:10299918..10299924,-p@chr17:10299918..10299924
-
Hg19::chr17:10303744..10303773,+p@chr17:10303744..10303773
+
Hg19::chr17:10310119..10310123,-p@chr17:10310119..10310123
-
Hg19::chr17:10323360..10323378,+p@chr17:10323360..10323378
+
Hg19::chr17:10323363..10323366,-p3@MYH8
Hg19::chr17:10325261..10325267,-p1@MYH8
Hg19::chr17:10325303..10325311,-p2@MYH8
Hg19::chr17:10533450..10533457,+p@chr17:10533450..10533457
+
Hg19::chr17:10537375..10537387,-p@chr17:10537375..10537387
-
Hg19::chr17:10537430..10537439,-p@chr17:10537430..10537439
-
Hg19::chr17:10537442..10537452,-p@chr17:10537442..10537452
-
Hg19::chr17:10539045..10539068,+p@chr17:10539045..10539068
+
Hg19::chr17:10541616..10541630,-p@chr17:10541616..10541630
-
Hg19::chr17:10541701..10541714,+p@chr17:10541701..10541714
+
Hg19::chr17:10542429..10542477,+p@chr17:10542429..10542477
+
Hg19::chr17:10542690..10542702,-p2@MYH3
Hg19::chr17:10542721..10542730,-p6@MYH3
Hg19::chr17:10542947..10542952,+p@chr17:10542947..10542952
+
Hg19::chr17:10543000..10543023,+p@chr17:10543000..10543023
+
Hg19::chr17:10543362..10543373,-p8@MYH3
Hg19::chr17:10543535..10543570,-p3@MYH3
Hg19::chr17:10544511..10544520,-p@chr17:10544511..10544520
-
Hg19::chr17:10555831..10555857,-p@chr17:10555831..10555857
-
Hg19::chr17:10560619..10560631,-p1@MYH3
Hg19::chr17:10560665..10560669,-p5@MYH3
Hg19::chr17:25904469..25904479,+p12@KSR1
Hg19::chr17:40563207..40563209,-p@chr17:40563207..40563209
-
Hg19::chr17:45286297..45286312,+p5@MYL4
Hg19::chr17:65040577..65040582,+p4@CACNG1
Hg19::chr17:65040646..65040675,+p2@CACNG1
Hg19::chr17:65040678..65040733,+p1@CACNG1
Hg19::chr17:65040737..65040746,+p3@CACNG1
Hg19::chr17:65040748..65040753,+p5@CACNG1
Hg19::chr18:3193857..3193869,+p@chr18:3193857..3193869
+
Hg19::chr18:3220187..3220208,-p6@MYOM1
Hg19::chr18:55922928..55922935,+p@chr18:55922928..55922935
+
Hg19::chr19:14217762..14217764,-p@chr19:14217762..14217764
-
Hg19::chr19:14228521..14228536,-p2@PRKACA
Hg19::chr19:18554708..18554716,-p3@ENST00000541164
Hg19::chr19:18554726..18554736,-p2@ENST00000541164
Hg19::chr19:18554761..18554768,-p4@ENST00000541164
Hg19::chr19:33977922..33977934,-p@chr19:33977922..33977934
-
Hg19::chr19:34884793..34884811,+p@chr19:34884793..34884811
+
Hg19::chr19:34884817..34884868,+p@chr19:34884817..34884868
+
Hg19::chr19:46843663..46843674,+p8@HIF3A
Hg19::chr19:48283801..48283815,+p@chr19:48283801..48283815
+
Hg19::chr19:49222956..49222990,-p2@MAMSTR
Hg19::chr19:57417488..57417493,+p@chr19:57417488..57417493
+
Hg19::chr1:1846519..1846531,+p5@CALML6
Hg19::chr1:1846693..1846705,+p4@CALML6
Hg19::chr1:204420155..204420164,-p@chr1:204420155..204420164
-
Hg19::chr1:229567498..229567506,-p@chr1:229567498..229567506
-
Hg19::chr1:229568499..229568505,+p@chr1:229568499..229568505
+
Hg19::chr1:23743877..23743887,-p@chr1:23743877..23743887
-
Hg19::chr1:26316072..26316085,-p@chr1:26316072..26316085
-
Hg19::chr1:6615362..6615371,+p3@TAS1R1
Hg19::chr1:9129895..9129902,-p19@SLC2A5
Hg19::chr20:36152838..36152861,-p4@BLCAP
Hg19::chr20:36152878..36152889,-p9@BLCAP
Hg19::chr20:55091871..55091878,+p3@FAM209A
Hg19::chr20:57427765..57427783,+p51@GNAS
Hg19::chr22:36246064..36246069,-p@chr22:36246064..36246069
-
Hg19::chr22:36246136..36246155,-p@chr22:36246136..36246155
-
Hg19::chr22:36246158..36246175,-p@chr22:36246158..36246175
-
Hg19::chr2:127861232..127861245,-p@chr2:127861232..127861245
-
Hg19::chr2:179659754..179659767,+p@chr2:179659754..179659767
+
Hg19::chr2:220360850..220360855,+p@chr2:220360850..220360855
+
Hg19::chr2:233390904..233390920,+p2@CHRND
Hg19::chr2:233404417..233404428,+p3@CHRNG
Hg19::chr2:233404429..233404447,+p1@CHRNG
Hg19::chr2:24714729..24714761,+p1@NCOA1
Hg19::chr2:71681010..71681037,+p7@DYSF
Hg19::chr3:130236014..130236030,+p@chr3:130236014..130236030
+
Hg19::chr3:52869205..52869238,-p2@MUSTN1
Hg19::chr3:8775466..8775512,+p1@CAV3
Hg19::chr4:172396418..172396419,+p@chr4:172396418..172396419
+
Hg19::chr4:34898792..34898800,+p@chr4:34898792..34898800
+
Hg19::chr4:671754..671765,+p8@MYL5
Hg19::chr4:671780..671793,+p5@MYL5
Hg19::chr5:138730459..138730471,-p@chr5:138730459..138730471
-
Hg19::chr5:148758849..148758861,-p1@IL17B
Hg19::chr6:12007918..12007931,+p1@ENST00000437559
Hg19::chr6:12007963..12007974,+p3@ENST00000437559
Hg19::chr6:150621376..150621399,+p@chr6:150621376..150621399
+
Hg19::chr6:41020934..41020948,+p1@APOBEC2
Hg19::chr6:52001069..52001073,+p@chr6:52001069..52001073
+
Hg19::chr8:144523662..144523672,-p@chr8:144523662..144523672
-
Hg19::chr9:118024813..118024828,-p@chr9:118024813..118024828
-
Hg19::chr9:35683115..35683137,-p@chr9:35683115..35683137
-
Hg19::chr9:35684272..35684277,-p@chr9:35684272..35684277
-
Hg19::chr9:97356126..97356142,-p3@FBP2
Hg19::chrX:105445717..105445733,+p4@MUM1L1
Hg19::chrX:110513769..110513778,-p5@CAPN6
Hg19::chrX:119495934..119495950,+p1@ATP1B4
Hg19::chrX:125953692..125953697,+p3@CXorf64
Hg19::chrX:125953702..125953722,+p1@CXorf64
Hg19::chrX:130192273..130192296,+p2@ARHGAP36
Hg19::chrX:130192318..130192323,+p1@ARHGAP36
Hg19::chrX:63450480..63450511,-p2@ASB12
Hg19::chrX:99839925..99839938,+p1@TNMD


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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