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Coexpression cluster:C173

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Full id: C173_Adipocyte_mature_skin_left_Hepatocyte_Osteoblast_adipose



Phase1 CAGE Peaks

Hg19::chr10:102107148..102107161,+p9@SCD
Hg19::chr10:102107168..102107180,+p11@SCD
Hg19::chr10:102107191..102107209,+p7@SCD
Hg19::chr10:102107808..102107865,+p8@SCD
Hg19::chr10:102107884..102107910,+p13@SCD
Hg19::chr10:102112119..102112137,+p@chr10:102112119..102112137
+
Hg19::chr10:102112150..102112189,+p@chr10:102112150..102112189
+
Hg19::chr10:102112191..102112213,+p@chr10:102112191..102112213
+
Hg19::chr10:102114285..102114307,+p@chr10:102114285..102114307
+
Hg19::chr10:102114326..102114340,+p@chr10:102114326..102114340
+
Hg19::chr10:102116281..102116301,+p@chr10:102116281..102116301
+
Hg19::chr10:102116352..102116360,+p@chr10:102116352..102116360
+
Hg19::chr10:102116406..102116419,+p@chr10:102116406..102116419
+
Hg19::chr10:102120488..102120498,+p@chr10:102120488..102120498
+
Hg19::chr10:102120684..102120716,+p@chr10:102120684..102120716
+
Hg19::chr10:102120837..102120873,+p@chr10:102120837..102120873
+
Hg19::chr10:102121513..102121533,+p2@ENST00000537595
Hg19::chr10:102122141..102122176,+p@chr10:102122141..102122176
+
Hg19::chr10:102122225..102122259,+p@chr10:102122225..102122259
+
Hg19::chr10:102122388..102122405,+p@chr10:102122388..102122405
+
Hg19::chr10:102122643..102122654,+p@chr10:102122643..102122654
+
Hg19::chr10:102122663..102122689,+p@chr10:102122663..102122689
+
Hg19::chr10:102123464..102123502,+p2@AF113690
Hg19::chr10:102123593..102123621,+p1@AF113690
Hg19::chr10:113915737..113915754,-p@chr10:113915737..113915754
-
Hg19::chr10:113928643..113928689,-p@chr10:113928643..113928689
-
Hg19::chr10:114136055..114136067,+p13@ACSL5
Hg19::chr10:53458765..53458768,+p@chr10:53458765..53458768
+
Hg19::chr10:53458769..53458785,+p@chr10:53458769..53458785
+
Hg19::chr11:111888022..111888037,+p17@DIXDC1
Hg19::chr11:111888043..111888056,+p22@DIXDC1
Hg19::chr11:111896321..111896332,+p4@DLAT
Hg19::chr11:111896671..111896691,+p@chr11:111896671..111896691
+
Hg19::chr11:111896693..111896701,+p@chr11:111896693..111896701
+
Hg19::chr11:35232781..35232791,+p1@U94903
Hg19::chr11:43702302..43702318,+p3@HSD17B12
Hg19::chr11:46615803..46615814,-p5@AMBRA1
Hg19::chr11:62439379..62439382,-p22@C11orf48
Hg19::chr11:62439729..62439747,-p2@C11orf48
Hg19::chr11:75271468..75271477,+p@chr11:75271468..75271477
+
Hg19::chr11:77775063..77775072,+p4@THRSP
Hg19::chr11:77775379..77775389,-p@chr11:77775379..77775389
-
Hg19::chr11:822386..822401,+p10@PNPLA2
Hg19::chr11:82828304..82828309,-p@chr11:82828304..82828309
-
Hg19::chr11:86667004..86667031,-p@chr11:86667004..86667031
-
Hg19::chr12:109665191..109665193,+p16@ACACB
Hg19::chr12:50503643..50503660,+p@chr12:50503643..50503660
+
Hg19::chr12:53224219..53224221,-p3@KRT79
Hg19::chr12:56710279..56710303,-p9@CNPY2
Hg19::chr12:57543246..57543251,+p@chr12:57543246..57543251
+
Hg19::chr12:89744674..89744686,+p6@LOC100131490
Hg19::chr15:83330979..83330982,-p23@AP3B2
Hg19::chr15:83330983..83330997,-p10@AP3B2
Hg19::chr16:68325453..68325473,+p@chr16:68325453..68325473
+
Hg19::chr16:69176140..69176147,+p@chr16:69176140..69176147
+
Hg19::chr16:85319990..85319997,+p@chr16:85319990..85319997
+
Hg19::chr17:20687806..20687810,+p3@SCDP1
Hg19::chr17:20688364..20688394,+p2@SCDP1
Hg19::chr17:20688808..20688832,+p@chr17:20688808..20688832
+
Hg19::chr17:22026633..22026638,+p@chr17:22026633..22026638
+
Hg19::chr17:41008915..41008925,+p@chr17:41008915..41008925
+
Hg19::chr17:48503603..48503622,+p1@ACSF2
Hg19::chr19:4512807..4512811,-p2@PLIN4
Hg19::chr1:109939715..109939728,+p@chr1:109939715..109939728
+
Hg19::chr1:9129347..9129370,-p11@SLC2A5
Hg19::chr1:9129735..9129762,-p4@SLC2A5
Hg19::chr20:42939371..42939377,+p@chr20:42939371..42939377
+
Hg19::chr21:47648451..47648462,-p3@LSS
Hg19::chr22:39916888..39916894,+p12@ATF4
Hg19::chr2:65356996..65357005,+p@chr2:65356996..65357005
+
Hg19::chr3:12190006..12190011,+p19@SYN2
Hg19::chr3:12190041..12190062,+p6@SYN2
Hg19::chr3:126008710..126008714,-p@chr3:126008710..126008714
-
Hg19::chr3:154797843..154797858,+p15@MME
Hg19::chr3:186570986..186570997,+p3@ADIPOQ
Hg19::chr3:186572016..186572028,+p@chr3:186572016..186572028
+
Hg19::chr3:186572114..186572128,+p@chr3:186572114..186572128
+
Hg19::chr3:186572221..186572231,+p@chr3:186572221..186572231
+
Hg19::chr3:186572288..186572301,+p@chr3:186572288..186572301
+
Hg19::chr3:186575301..186575315,+p@chr3:186575301..186575315
+
Hg19::chr3:186575349..186575368,+p@chr3:186575349..186575368
+
Hg19::chr3:52269260..52269269,-p@chr3:52269260..52269269
-
Hg19::chr3:52821997..52822012,+p3@ITIH1
Hg19::chr3:9911748..9911751,-p@chr3:9911748..9911751
-
Hg19::chr3:9911902..9911905,-p@chr3:9911902..9911905
-
Hg19::chr5:150138790..150138796,-p18@DCTN4
Hg19::chr5:74806597..74806605,+p@chr5:74806597..74806605
+
Hg19::chr5:76435093..76435109,+p1@ENST00000511547
p1@ENST00000515356
Hg19::chr5:80528491..80528513,+p@chr5:80528491..80528513
+
Hg19::chr6:127663543..127663559,-p5@ECHDC1
Hg19::chr6:127664628..127664661,-p4@ECHDC1
Hg19::chr6:53305337..53305366,-p@chr6:53305337..53305366
-
Hg19::chr6:83947539..83947555,-p@chr6:83947539..83947555
-
Hg19::chr8:19823146..19823158,+p@chr8:19823146..19823158
+
Hg19::chr8:27168021..27168026,+p@chr8:27168021..27168026
+
Hg19::chr8:82391082..82391095,-p@chr8:82391082..82391095
-
Hg19::chr8:82391711..82391737,-p2@FABP4
Hg19::chr8:82392752..82392769,-p@chr8:82392752..82392769
-
Hg19::chr9:95004537..95004561,-p@chr9:95004537..95004561
-
Hg19::chrX:151999438..151999444,-p3@CETN2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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