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Coexpression cluster:C55

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Full id: C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma



Phase1 CAGE Peaks

Hg19::chr10:106013815..106013828,+p9@GSTO1
Hg19::chr10:54515261..54515272,-p4@ENST00000443523
Hg19::chr10:73107816..73107832,-p@chr10:73107816..73107832
-
Hg19::chr10:73107857..73107859,-p@chr10:73107857..73107859
-
Hg19::chr10:7745303..7745349,+p1@ITIH2
Hg19::chr11:111230079..111230088,-p8@POU2AF1
Hg19::chr11:111230109..111230119,-p5@POU2AF1
Hg19::chr11:111788738..111788757,+p7@C11orf52
Hg19::chr11:19998187..19998192,+p@chr11:19998187..19998192
+
Hg19::chr11:19998278..19998297,+p@chr11:19998278..19998297
+
Hg19::chr11:22696465..22696478,+p15@GAS2
Hg19::chr11:2753785..2753815,-p@chr11:2753785..2753815
-
Hg19::chr11:2753854..2753856,-p@chr11:2753854..2753856
-
Hg19::chr11:34380681..34380705,-p@chr11:34380681..34380705
-
Hg19::chr11:46741130..46741141,+p@chr11:46741130..46741141
+
Hg19::chr11:61102006..61102013,+p5@DAK
Hg19::chr11:65384046..65384063,-p@chr11:65384046..65384063
-
Hg19::chr12:24191262..24191291,-p@chr12:24191262..24191291
-
Hg19::chr12:6335301..6335315,+p@chr12:6335301..6335315
+
Hg19::chr12:9266667..9266681,-p@chr12:9266667..9266681
-
Hg19::chr13:24190079..24190098,+p@chr13:24190079..24190098
+
Hg19::chr13:52586085..52586102,-p2@ATP7B
Hg19::chr13:52733937..52733950,-p8@NEK3
Hg19::chr13:52733980..52734002,-p4@NEK3
Hg19::chr13:76334992..76335005,+p21@LMO7
Hg19::chr13:98921900..98921918,+p@chr13:98921900..98921918
+
Hg19::chr14:105233283..105233290,-p@chr14:105233283..105233290
-
Hg19::chr14:24050941..24050946,+p@chr14:24050941..24050946
+
Hg19::chr14:24053130..24053137,-p@chr14:24053130..24053137
-
Hg19::chr14:24105566..24105579,+p1@DHRS2
Hg19::chr14:24105827..24105838,+p7@DHRS2
Hg19::chr14:24109018..24109027,+p@chr14:24109018..24109027
+
Hg19::chr14:24110986..24110989,+p@chr14:24110986..24110989
+
Hg19::chr14:24113321..24113333,+p@chr14:24113321..24113333
+
Hg19::chr14:38334576..38334578,+p@chr14:38334576..38334578
+
Hg19::chr14:39644079..39644088,+p41@PNN
Hg19::chr14:54425475..54425500,-p8@BMP4
Hg19::chr14:88490934..88490953,+p1@ENST00000555996
p1@ENST00000556673
Hg19::chr14:94947361..94947376,+p@chr14:94947361..94947376
+
Hg19::chr14:94947386..94947396,+p@chr14:94947386..94947396
+
Hg19::chr15:101631815..101631824,-p@chr15:101631815..101631824
-
Hg19::chr15:40294703..40294711,+p12@EIF2AK4
Hg19::chr15:40294718..40294730,+p10@EIF2AK4
Hg19::chr15:40294745..40294760,+p6@EIF2AK4
Hg19::chr15:40294761..40294774,+p3@EIF2AK4
Hg19::chr15:40294788..40294801,+p9@EIF2AK4
Hg19::chr15:40294803..40294815,+p8@EIF2AK4
Hg19::chr15:56537258..56537268,-p@chr15:56537258..56537268
-
Hg19::chr15:56537273..56537289,-p@chr15:56537273..56537289
-
Hg19::chr15:56537291..56537312,-p@chr15:56537291..56537312
-
Hg19::chr15:60695016..60695033,-p5@ANXA2
Hg19::chr15:60695045..60695056,-p10@ANXA2
Hg19::chr15:60695071..60695089,-p6@ANXA2
Hg19::chr15:60695090..60695093,-p19@ANXA2
Hg19::chr15:63179288..63179293,+p@chr15:63179288..63179293
+
Hg19::chr15:65670329..65670351,-p1@IGDCC3
Hg19::chr16:15489650..15489670,+p4@MPV17L
Hg19::chr16:30124013..30124025,-p@chr16:30124013..30124025
-
Hg19::chr16:30124030..30124050,-p@chr16:30124030..30124050
-
Hg19::chr16:524869..524883,+p5@RAB11FIP3
Hg19::chr16:85569070..85569077,-p@chr16:85569070..85569077
-
Hg19::chr16:85832119..85832145,+p@chr16:85832119..85832145
+
Hg19::chr16:85832146..85832165,+p@chr16:85832146..85832165
+
Hg19::chr17:14276770..14276781,+p@chr17:14276770..14276781
+
Hg19::chr17:29827153..29827159,+p@chr17:29827153..29827159
+
Hg19::chr17:41006104..41006119,+p4@AOC3
Hg19::chr17:41327736..41327748,+p3@CU679501
Hg19::chr17:41327760..41327769,+p4@CU679501
Hg19::chr17:41327771..41327784,+p2@CU679501
Hg19::chr17:41622731..41622764,-p5@ETV4
Hg19::chr17:41622765..41622821,-p2@ETV4
Hg19::chr17:48616092..48616118,+p@chr17:48616092..48616118
+
Hg19::chr17:48616143..48616150,+p@chr17:48616143..48616150
+
Hg19::chr17:53343202..53343207,+p9@HLF
Hg19::chr17:53343577..53343588,+p@chr17:53343577..53343588
+
Hg19::chr17:53343589..53343600,+p@chr17:53343589..53343600
+
Hg19::chr17:53343606..53343643,+p@chr17:53343606..53343643
+
Hg19::chr17:53344945..53344977,+p2@HLF
Hg19::chr17:55657847..55657884,+p@chr17:55657847..55657884
+
Hg19::chr17:7082560..7082572,-p4@ASGR1
Hg19::chr17:7082573..7082598,-p5@ASGR1
Hg19::chr17:73888918..73888931,-p@chr17:73888918..73888931
-
Hg19::chr17:74372662..74372664,+p35@SPHK1
Hg19::chr17:79952836..79952845,-p@chr17:79952836..79952845
-
Hg19::chr17:79953210..79953234,+p@chr17:79953210..79953234
+
Hg19::chr17:79953236..79953247,+p@chr17:79953236..79953247
+
Hg19::chr17:79953252..79953267,+p@chr17:79953252..79953267
+
Hg19::chr17:79953269..79953276,+p@chr17:79953269..79953276
+
Hg19::chr17:79953286..79953289,+p@chr17:79953286..79953289
+
Hg19::chr17:79953290..79953297,+p@chr17:79953290..79953297
+
Hg19::chr17:79953310..79953319,+p@chr17:79953310..79953319
+
Hg19::chr17:79953455..79953493,+p@chr17:79953455..79953493
+
Hg19::chr17:80278355..80278368,+p@chr17:80278355..80278368
+
Hg19::chr17:80283509..80283514,+p@chr17:80283509..80283514
+
Hg19::chr17:80283535..80283543,+p@chr17:80283535..80283543
+
Hg19::chr18:32508476..32508518,-p@chr18:32508476..32508518
-
Hg19::chr18:56080911..56080917,-p@chr18:56080911..56080917
-
Hg19::chr19:1051123..1051134,+p@chr19:1051123..1051134
+
Hg19::chr19:11347228..11347241,-p@chr19:11347228..11347241
-
Hg19::chr19:18492973..18492983,+p@chr19:18492973..18492983
+
Hg19::chr19:34664331..34664347,-p@chr19:34664331..34664347
-
Hg19::chr19:36611230..36611239,+p@chr19:36611230..36611239
+
Hg19::chr19:4582421..4582426,-p@chr19:4582421..4582426
-
Hg19::chr19:51858009..51858048,-p2@ETFB
Hg19::chr19:54368001..54368022,+p1@ENST00000422045
Hg19::chr19:54368932..54368952,+p@chr19:54368932..54368952
+
Hg19::chr1:10231286..10231331,+p6@UBE4B
Hg19::chr1:183418614..183418617,+p@chr1:183418614..183418617
+
Hg19::chr1:2066387..2066399,+p27@PRKCZ
Hg19::chr1:20813184..20813200,-p16@CAMK2N1
Hg19::chr1:20813209..20813232,-p8@CAMK2N1
Hg19::chr1:230845029..230845045,-p@chr1:230845029..230845045
-
Hg19::chr1:3208995..3209014,+p@chr1:3208995..3209014
+
Hg19::chr1:33160831..33160852,-p9@SYNC
Hg19::chr1:33160859..33160872,-p12@SYNC
Hg19::chr1:3373381..3373424,-p@chr1:3373381..3373424
-
Hg19::chr1:3373997..3374006,+p@chr1:3373997..3374006
+
Hg19::chr1:3374197..3374210,+p@chr1:3374197..3374210
+
Hg19::chr1:43502138..43502148,+p@chr1:43502138..43502148
+
Hg19::chr1:54821913..54821929,-p@chr1:54821913..54821929
-
Hg19::chr1:94057754..94057796,+p1@ENST00000431770
Hg19::chr1:9777591..9777605,+p@chr1:9777591..9777605
+
Hg19::chr20:23639928..23639941,+p@chr20:23639928..23639941
+
Hg19::chr20:4152356..4152363,+p8@SMOX
Hg19::chr20:57587795..57587811,+p@chr20:57587795..57587811
+
Hg19::chr20:62369476..62369487,+p7@LIME1
Hg19::chr20:62369494..62369503,+p9@LIME1
Hg19::chr20:62372434..62372484,+p5@SLC2A4RG
Hg19::chr20:62655807..62655838,+p@chr20:62655807..62655838
+
Hg19::chr20:62655876..62655885,+p@chr20:62655876..62655885
+
Hg19::chr20:62655886..62655904,+p@chr20:62655886..62655904
+
Hg19::chr20:62655920..62655936,+p@chr20:62655920..62655936
+
Hg19::chr20:62667340..62667354,+p8@LINC00176
Hg19::chr21:16816643..16816654,-p@chr21:16816643..16816654
-
Hg19::chr21:42694815..42694825,+p@chr21:42694815..42694825
+
Hg19::chr21:44590204..44590215,+p7@CRYAA
Hg19::chr21:44590245..44590255,+p8@CRYAA
Hg19::chr21:44591740..44591760,+p4@CRYAA
Hg19::chr21:44591794..44591807,+p5@CRYAA
Hg19::chr21:44591824..44591835,+p9@CRYAA
Hg19::chr21:45902872..45902891,+p@chr21:45902872..45902891
+
Hg19::chr21:45902929..45902938,+p@chr21:45902929..45902938
+
Hg19::chr21:45926343..45926357,-p@chr21:45926343..45926357
-
Hg19::chr22:24406066..24406088,+p@chr22:24406066..24406088
+
Hg19::chr22:24406119..24406125,+p@chr22:24406119..24406125
+
Hg19::chr22:29965263..29965274,-p@chr22:29965263..29965274
-
Hg19::chr22:29965275..29965284,-p@chr22:29965275..29965284
-
Hg19::chr22:49088918..49088921,+p18@FAM19A5
Hg19::chr22:49089001..49089013,+p9@FAM19A5
Hg19::chr22:49089016..49089036,+p8@FAM19A5
Hg19::chr22:49098490..49098492,-p@chr22:49098490..49098492
-
Hg19::chr2:101869394..101869415,+p5@C2orf29
Hg19::chr2:113977697..113977733,-p6@PAX8
Hg19::chr2:11494310..11494313,-p@chr2:11494310..11494313
-
Hg19::chr2:11505541..11505552,-p2@ENST00000430897
Hg19::chr2:11505555..11505581,-p1@ENST00000430897
Hg19::chr2:11679754..11679759,+p26@GREB1
Hg19::chr2:118847254..118847263,+p@chr2:118847254..118847263
+
Hg19::chr2:128928037..128928045,+p19@UGGT1
Hg19::chr2:128928046..128928053,+p16@UGGT1
Hg19::chr2:128928056..128928064,+p12@UGGT1
Hg19::chr2:128928065..128928077,+p8@UGGT1
Hg19::chr2:128928091..128928101,+p13@UGGT1
Hg19::chr2:128928131..128928144,+p7@UGGT1
Hg19::chr2:138722283..138722293,+p@chr2:138722283..138722293
+
Hg19::chr2:150443743..150443763,-p5@MMADHC
Hg19::chr2:152832119..152832136,-p@chr2:152832119..152832136
-
Hg19::chr2:161348944..161348970,-p@chr2:161348944..161348970
-
Hg19::chr2:169047242..169047254,-p@chr2:169047242..169047254
-
Hg19::chr2:171571796..171571808,+p4@SP5
Hg19::chr2:171571810..171571813,+p12@SP5
Hg19::chr2:171571827..171571853,+p1@SP5
Hg19::chr2:178129680..178129691,-p35@NFE2L2
Hg19::chr2:180209292..180209307,+p@chr2:180209292..180209307
+
Hg19::chr2:188375568..188375573,+p@chr2:188375568..188375573
+
Hg19::chr2:201171049..201171056,+p17@SPATS2L
Hg19::chr2:219613831..219613849,+p@chr2:219613831..219613849
+
Hg19::chr2:223535653..223535657,+p@chr2:223535653..223535657
+
Hg19::chr2:233734968..233734987,+p2@C2orf82
Hg19::chr2:233734998..233735010,+p7@C2orf82
Hg19::chr2:238510264..238510281,-p12@RAB17
Hg19::chr2:241816029..241816038,+p8@AGXT
Hg19::chr2:242710114..242710126,+p@chr2:242710114..242710126
+
Hg19::chr2:242710131..242710142,+p@chr2:242710131..242710142
+
Hg19::chr2:242710144..242710150,+p@chr2:242710144..242710150
+
Hg19::chr2:242710152..242710173,+p@chr2:242710152..242710173
+
Hg19::chr2:242750092..242750115,-p1@D55640
Hg19::chr2:242750122..242750135,-p2@D55640
Hg19::chr2:242750202..242750210,-p5@D55640
Hg19::chr2:39743444..39743454,+p@chr2:39743444..39743454
+
Hg19::chr2:61245234..61245263,-p7@PUS10
Hg19::chr2:62797131..62797150,-p@chr2:62797131..62797150
-
Hg19::chr2:69408193..69408204,+p@chr2:69408193..69408204
+
Hg19::chr2:69507486..69507504,+p@chr2:69507486..69507504
+
Hg19::chr2:71357490..71357507,+p5@MPHOSPH10
Hg19::chr2:71357516..71357523,+p14@MPHOSPH10
Hg19::chr2:71357527..71357532,+p15@MPHOSPH10
Hg19::chr2:71357575..71357580,+p16@MPHOSPH10
Hg19::chr2:71357689..71357700,+p7@MPHOSPH10
Hg19::chr2:71358627..71358668,-p@chr2:71358627..71358668
-
Hg19::chr2:74669468..74669481,-p18@RTKN
Hg19::chr2:74669504..74669520,-p9@RTKN
Hg19::chr2:74725787..74725817,+p@chr2:74725787..74725817
+
Hg19::chr2:74728801..74728811,+p@chr2:74728801..74728811
+
Hg19::chr2:74729768..74729780,+p7@LOC151534
Hg19::chr2:75749739..75749750,-p13@FAM176A
Hg19::chr2:8765741..8765752,+p@chr2:8765741..8765752
+
Hg19::chr3:115511314..115511328,-p@chr3:115511314..115511328
-
Hg19::chr3:115511342..115511357,-p@chr3:115511342..115511357
-
Hg19::chr3:123518704..123518728,-p28@MYLK
Hg19::chr3:123518738..123518771,-p20@MYLK
Hg19::chr3:126243032..126243049,+p4@CHST13
Hg19::chr3:149103836..149103848,+p@chr3:149103836..149103848
+
Hg19::chr3:24563837..24563845,-p@chr3:24563837..24563845
-
Hg19::chr3:53878829..53878837,-p8@CHDH
Hg19::chr3:8693729..8693738,-p4@C3orf32
Hg19::chr3:8693740..8693751,-p3@C3orf32
Hg19::chr4:14507912..14507929,-p1@MTND2P31
Hg19::chr4:69886109..69886116,-p2@UGT2B10
Hg19::chr4:73969908..73969969,-p7@ANKRD17
Hg19::chr4:74281831..74281845,+p8@ALB
Hg19::chr4:74281852..74281859,+p42@ALB
Hg19::chr4:74281935..74281942,+p34@ALB
Hg19::chr4:74301931..74301947,+p1@AFP
Hg19::chr4:74303903..74303913,+p@chr4:74303903..74303913
+
Hg19::chr4:74306401..74306416,+p@chr4:74306401..74306416
+
Hg19::chr4:74308029..74308041,+p6@AFP
Hg19::chr4:74313175..74313185,+p@chr4:74313175..74313185
+
Hg19::chr4:74313240..74313247,+p@chr4:74313240..74313247
+
Hg19::chr4:7532912..7532926,+p@chr4:7532912..7532926
+
Hg19::chr5:176514413..176514425,+p4@FGFR4
Hg19::chr5:27472506..27472517,+p3@ENST00000503107
p3@ENST00000505775
p3@ENST00000514844
Hg19::chr5:27472552..27472563,+p2@ENST00000503107
p2@ENST00000505775
p2@ENST00000514844
Hg19::chr5:73109145..73109156,+p8@RGNEF
Hg19::chr5:73109161..73109171,+p10@RGNEF
Hg19::chr5:73109177..73109186,+p14@RGNEF
Hg19::chr5:78281580..78281593,-p9@ARSB
Hg19::chr5:78281603..78281617,-p4@ARSB
Hg19::chr5:78281623..78281638,-p6@ARSB
Hg19::chr5:99382075..99382076,-p@chr5:99382075..99382076
-
Hg19::chr6:111067964..111067988,-p@chr6:111067964..111067988
-
Hg19::chr6:1228850..1228866,-p@chr6:1228850..1228866
-
Hg19::chr6:1228913..1228926,-p@chr6:1228913..1228926
-
Hg19::chr6:131148538..131148554,+p1@LOC100507203
Hg19::chr6:131956661..131956698,+p@chr6:131956661..131956698
+
Hg19::chr6:131956703..131956715,+p@chr6:131956703..131956715
+
Hg19::chr6:142652494..142652496,+p@chr6:142652494..142652496
+
Hg19::chr6:143382705..143382719,-p@chr6:143382705..143382719
-
Hg19::chr6:155649792..155649806,-p@chr6:155649792..155649806
-
Hg19::chr6:155649817..155649830,-p@chr6:155649817..155649830
-
Hg19::chr6:155649833..155649855,-p@chr6:155649833..155649855
-
Hg19::chr6:167413386..167413410,-p@chr6:167413386..167413410
-
Hg19::chr6:17744923..17744930,-p@chr6:17744923..17744930
-
Hg19::chr6:31633199..31633214,+p10@CSNK2B
Hg19::chr6:31833005..31833017,-p@chr6:31833005..31833017
-
Hg19::chr6:31833124..31833134,-p@chr6:31833124..31833134
-
Hg19::chr7:100334542..100334575,+p@chr7:100334542..100334575
+
Hg19::chr7:116451100..116451116,+p7@CAPZA2
Hg19::chr7:137749745..137749769,+p@chr7:137749745..137749769
+
Hg19::chr7:137749779..137749804,+p@chr7:137749779..137749804
+
Hg19::chr7:138001633..138001637,+p@chr7:138001633..138001637
+
Hg19::chr7:138037598..138037605,+p@chr7:138037598..138037605
+
Hg19::chr7:138250447..138250450,-p@chr7:138250447..138250450
-
Hg19::chr7:149572014..149572037,+p5@ATP6V0E2
Hg19::chr7:149572065..149572077,+p7@ATP6V0E2
Hg19::chr7:2661815..2661826,-p@chr7:2661815..2661826
-
Hg19::chr7:27161985..27162002,-p@chr7:27161985..27162002
-
Hg19::chr7:27162005..27162017,-p@chr7:27162005..27162017
-
Hg19::chr7:27162134..27162170,+p1@ENST00000521159
Hg19::chr7:27162183..27162194,+p1@ENST00000521687
Hg19::chr7:55246785..55246802,+p@chr7:55246785..55246802
+
Hg19::chr7:7196702..7196714,+p6@C1GALT1
Hg19::chr8:129569033..129569049,+p@chr8:129569033..129569049
+
Hg19::chr8:13134195..13134210,-p19@DLC1
Hg19::chr8:142410662..142410702,+p@chr8:142410662..142410702
+
Hg19::chr8:143844467..143844506,+p1@ENST00000523657
Hg19::chr8:144601518..144601527,-p@chr8:144601518..144601527
-
Hg19::chr8:145148703..145148707,+p@chr8:145148703..145148707
+
Hg19::chr8:146051115..146051126,-p@chr8:146051115..146051126
-
Hg19::chr8:17773397..17773420,-p@chr8:17773397..17773420
-
Hg19::chr8:17773488..17773502,-p@chr8:17773488..17773502
-
Hg19::chr8:17773510..17773522,-p@chr8:17773510..17773522
-
Hg19::chr8:17773586..17773592,-p@chr8:17773586..17773592
-
Hg19::chr8:17773774..17773784,-p@chr8:17773774..17773784
-
Hg19::chr8:22414130..22414179,+p22@SORBS3
Hg19::chr8:22414182..22414204,+p39@SORBS3
Hg19::chr8:22414219..22414229,+p@chr8:22414219..22414229
+
Hg19::chr8:42424452..42424454,+p@chr8:42424452..42424454
+
Hg19::chr9:103947331..103947342,+p14@LPPR1
Hg19::chr9:107651889..107651907,-p10@ABCA1
Hg19::chr9:107651917..107651931,-p11@ABCA1
Hg19::chr9:107651937..107651972,-p3@ABCA1
Hg19::chr9:111648081..111648125,-p@chr9:111648081..111648125
-
Hg19::chr9:111648126..111648133,-p@chr9:111648126..111648133
-
Hg19::chr9:116267536..116267547,+p40@RGS3
Hg19::chr9:116916326..116916337,+p@chr9:116916326..116916337
+
Hg19::chr9:116916370..116916385,+p@chr9:116916370..116916385
+
Hg19::chr9:116916423..116916436,+p@chr9:116916423..116916436
+
Hg19::chr9:130712867..130712874,-p22@FAM102A
Hg19::chr9:139693886..139693910,+p5@KIAA1984
Hg19::chr9:14868857..14868868,-p15@FREM1
Hg19::chr9:14868978..14869003,-p7@FREM1
Hg19::chr9:14869009..14869025,-p8@FREM1
Hg19::chr9:33816391..33816411,+p@chr9:33816391..33816411
+
Hg19::chr9:706306..706335,+p@chr9:706306..706335
+
Hg19::chr9:95964201..95964224,+p@chr9:95964201..95964224
+
Hg19::chrX:131624056..131624069,-p2@MBNL3
Hg19::chrX:132727356..132727358,-p@chrX:132727356..132727358
-
Hg19::chrX:133085358..133085360,-p@chrX:133085358..133085360
-
Hg19::chrX:133119895..133119957,-p2@GPC3
Hg19::chrX:133119959..133119970,-p8@GPC3
Hg19::chrX:133119988..133119999,-p6@GPC3
Hg19::chrX:150707006..150707017,-p@chrX:150707006..150707017
-
Hg19::chrX:150707031..150707048,-p@chrX:150707031..150707048
-
Hg19::chrX:152907353..152907371,+p@chrX:152907353..152907371
+
Hg19::chrX:152907850..152907862,+p4@DUSP9
Hg19::chrX:152907913..152907937,+p3@DUSP9
Hg19::chrX:152912616..152912667,+p1@DUSP9
Hg19::chrX:152912677..152912686,+p5@DUSP9
Hg19::chrX:24208832..24208866,+p@chrX:24208832..24208866
+
Hg19::chrX:24690771..24690782,-p12@PCYT1B
Hg19::chrX:50174557..50174568,-p@chrX:50174557..50174568
-
Hg19::chrX:50174600..50174614,-p@chrX:50174600..50174614
-
Hg19::chrX:50174615..50174630,-p@chrX:50174615..50174630
-
Hg19::chrX:50174632..50174645,-p@chrX:50174632..50174645
-
Hg19::chrX:50174653..50174669,-p@chrX:50174653..50174669
-
Hg19::chrX:50174672..50174678,-p@chrX:50174672..50174678
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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