Personal tools

Cytoscape test3: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 63: Line 63:
         <!-- Load data -->
         <!-- Load data -->
<script type="text/javascript">
<script type="text/javascript">
var durl = "/resource_browser/nwfiles/10717-109I6.xgmml";
var durl = "/resource_browser/nwfiles/10717-109I6_2.xgmml";
//$.get(durl, function(data) {
//$.get(durl, function(data) {
// xml = data;
// xml = data;

Revision as of 18:00, 8 May 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

Cytoscape Web will replace the contents of this div with your graph.

Style

Layout: (recalculate)

Filter

Z-Score filter:
0.00    
  
  0.00
Show edges: TF->MOTIF TF->MOTIF
Show nodes: Source TF Target TF MOTIF

NodeType
Source TFTarget TFPromoterZ-Score