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{{DOID
 
{{DOID
|id=DOID:1612
+
|alt_id=DOID:1648;;DOID:4241
|name=breast cancer
 
|namespace=disease_ontology
 
|def="A thoracic cancer that originates in the mammary gland." [url:http://en.wikipedia.org/wiki/Mammary_tumor]
 
|xref=MSH:D001943;;NCI:C9335;;OMIM:114480;;SNOMEDCT_2010_1_31:126926005;;SNOMEDCT_2010_1_31:154521006;;SNOMEDCT_2010_1_31:190121004;;SNOMEDCT_2010_1_31:254837009;;SNOMEDCT_2010_1_31:269595005;;UMLS_CUI:C0006142;;UMLS_CUI:C0153555;;UMLS_CUI:C1458155
 
|is_a=DOID:5093
 
|synonym="breast cancer" EXACT [];;"breast tumor" EXACT [NCI2004_11_17:C2910];;"Ca breast - NOS" EXACT [SNOMEDCT_2005_07_31:154521006];;"malignant neoplasm of breast" EXACT [];;"malignant tumor of the breast" EXACT [NCI2004_11_17:C9335];;"mammary cancer" EXACT [];;"mammary neoplasm" RELATED [];;"mammary tumor" EXACT [CSP2005:2016-0671];;"primary breast cancer" EXACT []
 
 
|comment=OMIM mapping confirmed by DO. [SN].
 
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=DOID:1648;;DOID:4241
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A thoracic cancer that originates in the mammary gland." [url:http://en.wikipedia.org/wiki/Mammary_tumor]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=DOID:1612
 +
|is_a=DOID:5093
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=breast cancer
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="breast cancer" EXACT [];;"breast tumor" EXACT [NCI2004_11_17:C2910];;"Ca breast - NOS" EXACT [SNOMEDCT_2005_07_31:154521006];;"malignant neoplasm of breast" EXACT [];;"malignant tumor of the breast" EXACT [NCI2004_11_17:C9335];;"mammary cancer" EXACT [];;"mammary neoplasm" RELATED [];;"mammary tumor" EXACT [CSP2005:2016-0671];;"primary breast cancer" EXACT []
 +
|union_of=
 +
|xref=MSH:D001943;;NCI:C9335;;OMIM:114480;;SNOMEDCT_2010_1_31:126926005;;SNOMEDCT_2010_1_31:154521006;;SNOMEDCT_2010_1_31:190121004;;SNOMEDCT_2010_1_31:254837009;;SNOMEDCT_2010_1_31:269595005;;UMLS_CUI:C0006142;;UMLS_CUI:C0153555;;UMLS_CUI:C1458155
 
}}
 
}}

Latest revision as of 07:49, 12 September 2014

Name:breast cancer
Namespace:FANTOM
Definition:"A thoracic cancer that originates in the mammary gland." [url:http://en.wikipedia.org/wiki/Mammary_tumor]
Xrefs:
links:

MSH:D001943
NCI:C9335
OMIM:114480
SNOMEDCT_2010_1_31:126926005
SNOMEDCT_2010_1_31:154521006
SNOMEDCT_2010_1_31:190121004
SNOMEDCT_2010_1_31:254837009
SNOMEDCT_2010_1_31:269595005
UMLS_CUI:C0006142
UMLS_CUI:C0153555

UMLS_CUI:C1458155
Synonyms: "breast cancer" EXACT []
"breast tumor" EXACT [NCI2004_11_17:C2910]
"Ca breast - NOS" EXACT [SNOMEDCT_2005_07_31:154521006]
"malignant neoplasm of breast" EXACT []
"malignant tumor of the breast" EXACT [NCI2004_11_17:C9335]
"mammary cancer" EXACT []
"mammary neoplasm" RELATED []
"mammary tumor" EXACT [CSP2005:2016-0671]
"primary breast cancer" EXACT []
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:1648
DOID:4241

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:5093(thoracic cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1612 (breast cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_cd40e37b26d776d5316b4b5611705f34p@chr17:74574500..74574512, -
2.57e-195FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_cd40e37b26d776d5316b4b5611705f34p@chr17:74574500..74574512, -
6.94e-147FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_9c302d1f970ff812f582d0066b7c66f1p1@DSCAM-AS1
6.94e-147FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498541..19498551, +
6.94e-147FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:8904309..8904317, +
6.94e-147FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_9c302d1f970ff812f582d0066b7c66f1p1@ENST00000456526
6.94e-147FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_9c302d1f970ff812f582d0066b7c66f1p@chr21:41756567..41756583, -
6.94e-147FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_9c302d1f970ff812f582d0066b7c66f1p@chr21:41756567..41756583, -
6.94e-147FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498507..19498511, +
6.94e-147FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498568..19498573, +
6.94e-147FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:8910201..8910211, +
6.94e-147FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498407..19498415, +
6.94e-147FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498541..19498551, +
6.94e-147FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_9c302d1f970ff812f582d0066b7c66f1p@chr11:85539944..85539950, +
6.94e-147FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_9c302d1f970ff812f582d0066b7c66f1p1@ENST00000456526
6.94e-147FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_9c302d1f970ff812f582d0066b7c66f1p@chr21:41711178..41711186, -
6.94e-147FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_9c302d1f970ff812f582d0066b7c66f1p2@ENST00000456526
6.94e-147FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_9c302d1f970ff812f582d0066b7c66f1p@chr9:83986187..83986191, -
6.94e-147FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_9c302d1f970ff812f582d0066b7c66f1p@chr21:41711178..41711186, -
6.94e-147FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_9c302d1f970ff812f582d0066b7c66f1p@chr9:83986187..83986191, -
6.94e-147FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_9c302d1f970ff812f582d0066b7c66f1p4@TSPAN9
6.94e-147FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498568..19498573, +
6.94e-147FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:8904309..8904317, +
6.94e-147FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_9c302d1f970ff812f582d0066b7c66f1p2@DSCAM-AS1
6.94e-147FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_9c302d1f970ff812f582d0066b7c66f1p@chr11:85539944..85539950, +
6.94e-147FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_9c302d1f970ff812f582d0066b7c66f1p2@DSCAM-AS1
6.94e-147FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498407..19498415, +
6.94e-147FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_9c302d1f970ff812f582d0066b7c66f1p@chr17:38843592..38843605, +
6.94e-147FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:19498507..19498511, +
6.94e-147FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_9c302d1f970ff812f582d0066b7c66f1p@chr10:8910201..8910211, +
6.94e-147FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_9c302d1f970ff812f582d0066b7c66f1p4@TSPAN9
6.94e-147FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_9c302d1f970ff812f582d0066b7c66f1p@chr17:38843592..38843605, +
6.94e-147FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_9c302d1f970ff812f582d0066b7c66f1p2@ENST00000456526
6.94e-147FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_9c302d1f970ff812f582d0066b7c66f1p1@DSCAM-AS1
2.79e-131FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_8f74a50e0b15aa746be0b43e8b558ec3p@chr3:129226514..129226531, +
2.79e-131FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_8f74a50e0b15aa746be0b43e8b558ec3p@chr3:129226514..129226531, +
8.91e-111FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_081e426245ad66293813d6fcf8b456b6p@chr17:59469536..59469541, +
8.91e-111FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_081e426245ad66293813d6fcf8b456b6p@chr13:23733194..23733206, +
8.91e-111FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_081e426245ad66293813d6fcf8b456b6p@chr17:59469536..59469541, +
8.91e-111FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_081e426245ad66293813d6fcf8b456b6p@chr13:23733194..23733206, +
8.91e-111FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_081e426245ad66293813d6fcf8b456b6p@chr20:52482691..52482707, -
8.91e-111FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_081e426245ad66293813d6fcf8b456b6p@chr20:52482691..52482707, -
1.3e-110FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_56120d4b932f8e7b4be4d9d7188ab9ddp@chr5:177505250..177505293, -
1.3e-110FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_56120d4b932f8e7b4be4d9d7188ab9ddp@chr5:177505250..177505293, -
3.03e-99FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_5314e536b386a02d04ff2081b73a5cd3p@chr3:129226494..129226510, +
3.03e-99FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_5314e536b386a02d04ff2081b73a5cd3p@chr3:129226494..129226510, +
5.02e-99FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_5c25ae24124209456fe9e98c0e759b58p11@FOXA1
5.02e-99FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_5c25ae24124209456fe9e98c0e759b58p11@FOXA1
1.55e-98FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_fc0367bad6983f07fd20523cac89cccep@chr1:96504230..96504238, -
1.55e-98FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_fc0367bad6983f07fd20523cac89cccep@chr10:19498455..19498482, +
1.55e-98FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_fc0367bad6983f07fd20523cac89cccep@chr13:23583578..23583586, +
1.55e-98FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_fc0367bad6983f07fd20523cac89cccep@chr19:15674459..15674486, +
1.55e-98FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_fc0367bad6983f07fd20523cac89cccep3@ENST00000456526
1.55e-98FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_fc0367bad6983f07fd20523cac89cccep@chr19:15674459..15674486, +
1.55e-98FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_fc0367bad6983f07fd20523cac89cccep@chr13:23583578..23583586, +
1.55e-98FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_fc0367bad6983f07fd20523cac89cccep@chr10:19498455..19498482, +
1.55e-98FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_fc0367bad6983f07fd20523cac89cccep3@ENST00000456526
1.55e-98FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_fc0367bad6983f07fd20523cac89cccep@chr17:65990543..65990553, -
1.55e-98FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_fc0367bad6983f07fd20523cac89cccep@chr17:65990543..65990553, -
1.55e-98FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_fc0367bad6983f07fd20523cac89cccep@chr1:96504230..96504238, -
4.23e-89FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_724532ea0aa183464a6c808a1bde8ffep3@ENST00000517884
4.23e-89FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_724532ea0aa183464a6c808a1bde8ffep3@ENST00000517884
7.73e-89FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_54699095806a701fcc65b3e4492c7093p@chr3:161089631..161089635, +
7.73e-89FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_54699095806a701fcc65b3e4492c7093p@chr3:161089631..161089635, +
1.46e-88FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_29e6171f51d64455c1482369962760abp@chr10:8091813..8091823, +
1.46e-88FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_29e6171f51d64455c1482369962760abp@chr10:8091813..8091823, +
2.57e-88FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_c1d834415c10b14bad0afc01936e4875p2@LINC00052
2.57e-88FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_c1d834415c10b14bad0afc01936e4875p2@LINC00052
5.61e-88FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_3646c7d0bfde4495dd85e528ef2a3620p@chr1:6488281..6488301, +
5.61e-88FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_3646c7d0bfde4495dd85e528ef2a3620p@chr1:6488281..6488301, +
1.74e-79FFCP PHASE1:Hg19::chr8:95653861..95653872,+#_4971d40914e3e9e456411792880a445ep10@ESRP1
1.74e-79FFCP PHASE2:Hg19::chr8:95653861..95653872,+#_4971d40914e3e9e456411792880a445ep10@ESRP1
1.21e-74FFCP PHASE2:Hg19::chr12:53359307..53359335,+#_5face28992c33e2a9359ca57053545e2p@chr12:53359307..53359335, +
1.21e-74FFCP PHASE2:Hg19::chr16:78085184..78085211,+#_5face28992c33e2a9359ca57053545e2p@chr16:78085184..78085211, +
1.21e-74FFCP PHASE1:Hg19::chr12:53359307..53359335,+#_5face28992c33e2a9359ca57053545e2p@chr12:53359307..53359335, +
1.21e-74FFCP PHASE1:Hg19::chr16:78085184..78085211,+#_5face28992c33e2a9359ca57053545e2p@chr16:78085184..78085211, +
1.56e-74FFCP PHASE1:Hg19::chr1:150953891..150953894,+#_f3b027d2934f65bc59d9ff1aa0ac4556p@chr1:150953891..150953894, +
1.56e-74FFCP PHASE2:Hg19::chr1:150953891..150953894,+#_f3b027d2934f65bc59d9ff1aa0ac4556p@chr1:150953891..150953894, +
2.58e-74FFCP PHASE1:Hg19::chr11:61280885..61280904,-#_8027e7efe7418a985e4a89e86c9f16dap@chr11:61280885..61280904, -
2.58e-74FFCP PHASE2:Hg19::chr14:100485738..100485745,+#_8027e7efe7418a985e4a89e86c9f16dap37@EVL
2.58e-74FFCP PHASE1:Hg19::chr9:137258939..137258945,+#_8027e7efe7418a985e4a89e86c9f16dap@chr9:137258939..137258945, +
2.58e-74FFCP PHASE2:Hg19::chr9:137258939..137258945,+#_8027e7efe7418a985e4a89e86c9f16dap@chr9:137258939..137258945, +
2.58e-74FFCP PHASE2:Hg19::chr11:61280885..61280904,-#_8027e7efe7418a985e4a89e86c9f16dap@chr11:61280885..61280904, -
2.58e-74FFCP PHASE1:Hg19::chr14:100485738..100485745,+#_8027e7efe7418a985e4a89e86c9f16dap37@EVL
7.4e-73FFCP PHASE2:Hg19::chr14:38065203..38065215,-#_3147bae7411447d51eecc459e1e37ec7p9@FOXA1
7.4e-73FFCP PHASE1:Hg19::chr14:38065203..38065215,-#_3147bae7411447d51eecc459e1e37ec7p9@FOXA1
3.22e-72FFCP PHASE1:Hg19::chr20:49241036..49241049,-#_f562899dd77c4f32c98f52fc5aae63bbp@chr20:49241036..49241049, -
3.22e-72FFCP PHASE2:Hg19::chr20:49241036..49241049,-#_f562899dd77c4f32c98f52fc5aae63bbp@chr20:49241036..49241049, -
4.11e-67FFCP PHASE2:Hg19::chr14:105267423..105267443,+#_f7b184a079a643cf64cda84583c2f232p2@ZBTB42
4.11e-67FFCP PHASE1:Hg19::chr14:105267423..105267443,+#_f7b184a079a643cf64cda84583c2f232p2@ZBTB42
9.57e-67FFCP PHASE1:Hg19::chr10:8096323..8096329,-#_2a1a5471b3185138ba2f426844889fb0p@chr10:8096323..8096329, -
9.57e-67FFCP PHASE2:Hg19::chr10:8096323..8096329,-#_2a1a5471b3185138ba2f426844889fb0p@chr10:8096323..8096329, -
2.4e-66FFCP PHASE1:Hg19::chr7:80551671..80551680,-#_587d67067fe7a591b1a596169e64179dp38@SEMA3C
2.4e-66FFCP PHASE2:Hg19::chr10:9238697..9238718,-#_587d67067fe7a591b1a596169e64179dp@chr10:9238697..9238718, -
2.4e-66FFCP PHASE2:Hg19::chr7:80551671..80551680,-#_587d67067fe7a591b1a596169e64179dp38@SEMA3C
2.4e-66FFCP PHASE1:Hg19::chr20:49347538..49347547,-#_587d67067fe7a591b1a596169e64179dp@chr20:49347538..49347547, -
2.4e-66FFCP PHASE2:Hg19::chr20:49347538..49347547,-#_587d67067fe7a591b1a596169e64179dp@chr20:49347538..49347547, -
2.4e-66FFCP PHASE1:Hg19::chr9:140506839..140506847,+#_587d67067fe7a591b1a596169e64179dp9@ARRDC1
2.4e-66FFCP PHASE2:Hg19::chr9:140506839..140506847,+#_587d67067fe7a591b1a596169e64179dp9@ARRDC1
2.4e-66FFCP PHASE1:Hg19::chr10:109305043..109305046,+#_587d67067fe7a591b1a596169e64179dp@chr10:109305043..109305046, +