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{{DOID
{{DOID
|id=DOID:3371
|alt_id=DOID:3370
|name=chondrosarcoma
|namespace=disease_ontology
|def=
|xref=MSH:D002813;;NCI:C2946;;OMIM:215300;;SNOMEDCT_2010_1_31:134336003;;SNOMEDCT_2010_1_31:14990007;;SNOMEDCT_2010_1_31:189886003;;SNOMEDCT_2010_1_31:443520009;;UMLS_CUI:C0008479;;UMLS_CUI:C1335473
|is_a=DOID:201
|synonym="chondrosarcoma" EXACT [NCI2004_11_17:C2946];;"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007];;"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003];;"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003];;"primary chondrosarcoma of bone" EXACT [];;"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=DOID:3370
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3371
|is_a=DOID:201
|is_obsolete=
|located_in=
|located_in=
|name=chondrosarcoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="chondrosarcoma" EXACT [NCI2004_11_17:C2946];;"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007];;"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003];;"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003];;"primary chondrosarcoma of bone" EXACT [];;"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
|union_of=
|xref=MSH:D002813;;NCI:C2946;;OMIM:215300;;SNOMEDCT_2010_1_31:134336003;;SNOMEDCT_2010_1_31:14990007;;SNOMEDCT_2010_1_31:189886003;;SNOMEDCT_2010_1_31:443520009;;UMLS_CUI:C0008479;;UMLS_CUI:C1335473
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:chondrosarcoma
Namespace:FANTOM
Xrefs:
links:

MSH:D002813
NCI:C2946
OMIM:215300
SNOMEDCT_2010_1_31:134336003
SNOMEDCT_2010_1_31:14990007
SNOMEDCT_2010_1_31:189886003
SNOMEDCT_2010_1_31:443520009
UMLS_CUI:C0008479

UMLS_CUI:C1335473
Synonyms: "chondrosarcoma" EXACT [NCI2004_11_17:C2946]
"chondrosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:14990007]
"chondrosarcoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189886003]
"chondrosarcoma of bone" EXACT [SNOMEDCT_2005_07_31:134336003]
"primary chondrosarcoma of bone" EXACT []
"primary chondrosarcoma of the bone" EXACT [NCI2004_11_17:C7155]
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:3370

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:201(connective tissue cancer)



Children


is a:FF:10720-109I9 (),DOID:4549 (extraosseous chondrosarcoma),DOID:5861 (myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3371 (chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chrX:135338397..135338402,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:135338397..135338402, -
5.42e-195FFCP PHASE1:Hg19::chr6:150735340..150735361,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:150735340..150735361, +
5.42e-195FFCP PHASE1:Hg19::chr4:72885984..72885997,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:72885984..72885997, -
5.42e-195FFCP PHASE2:Hg19::chr3:163194047..163194081,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:163194047..163194081, -
5.42e-195FFCP PHASE1:Hg19::chr3:127441545..127441550,-#_a94794a00b78c9028f3bf3b1af3efa58p58@MGLL
5.42e-195FFCP PHASE1:Hg19::chr14:87689429..87689432,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr14:87689429..87689432, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141785..2141802,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141785..2141802, -
5.42e-195FFCP PHASE2:Hg19::chr12:70351934..70351939,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:70351934..70351939, +
5.42e-195FFCP PHASE1:Hg19::chr1:197889977..197890013,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:197889977..197890013, +
5.42e-195FFCP PHASE1:Hg19::chr18:22253588..22253590,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:22253588..22253590, +
5.42e-195FFCP PHASE1:Hg19::chr15:96181433..96181441,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr15:96181433..96181441, -
5.42e-195FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:99680705..99680734, +
5.42e-195FFCP PHASE2:Hg19::chr3:157230599..157230604,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:157230599..157230604, +
5.42e-195FFCP PHASE1:Hg19::chr7:18439523..18439524,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr7:18439523..18439524, +
5.42e-195FFCP PHASE1:Hg19::chr12:79920639..79920642,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:79920639..79920642, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700043..63700053,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700043..63700053, +
5.42e-195FFCP PHASE2:Hg19::chr10:63700017..63700022,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700017..63700022, +
5.42e-195FFCP PHASE2:Hg19::chr4:169935479..169935481,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:169935479..169935481, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141862..2141887,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141862..2141887, -
5.42e-195FFCP PHASE1:Hg19::chr6:109702786..109702795,-#_a94794a00b78c9028f3bf3b1af3efa58p21@CD164
5.42e-195FFCP PHASE1:Hg19::chr3:2141851..2141858,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141851..2141858, -
5.42e-195FFCP PHASE1:Hg19::chr10:33244345..33244348,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244345..33244348, -
5.42e-195FFCP PHASE2:Hg19::chr10:33244302..33244305,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244302..33244305, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_a94794a00b78c9028f3bf3b1af3efa58p63@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr7:94540075..94540082,+#_a94794a00b78c9028f3bf3b1af3efa58p21@PPP1R9A
5.42e-195FFCP PHASE2:Hg19::chr1:198595872..198595878,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:198595872..198595878, +
5.42e-195FFCP PHASE1:Hg19::chr3:157230582..157230593,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:157230582..157230593, +
5.42e-195FFCP PHASE1:Hg19::chr1:192407901..192407907,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:192407901..192407907, -
5.42e-195FFCP PHASE1:Hg19::chr19:41281630..41281644,+#_a94794a00b78c9028f3bf3b1af3efa58p6@RAB4B
5.42e-195FFCP PHASE1:Hg19::chr11:30105969..30105977,-#_a94794a00b78c9028f3bf3b1af3efa58p1@ENST00000527819
5.42e-195FFCP PHASE2:Hg19::chr6:142993137..142993142,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:142993137..142993142, +
5.42e-195FFCP PHASE1:Hg19::chr4:169935453..169935460,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:169935453..169935460, -
5.42e-195FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_a94794a00b78c9028f3bf3b1af3efa58p36@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:228806586..228806591,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:228806586..228806591, +
5.42e-195FFCP PHASE1:Hg19::chr4:72897846..72897853,+#_a94794a00b78c9028f3bf3b1af3efa58p7@NPFFR2
5.42e-195FFCP PHASE2:Hg19::chr9:13005000..13005036,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:13005000..13005036, -
5.42e-195FFCP PHASE2:Hg19::chr19:56047669..56047674,-#_a94794a00b78c9028f3bf3b1af3efa58p7@SBK2
5.42e-195FFCP PHASE1:Hg19::chr2:188420470..188420480,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:188420470..188420480, +
5.42e-195FFCP PHASE1:Hg19::chr4:145124273..145124279,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:145124273..145124279, +
5.42e-195FFCP PHASE2:Hg19::chr3:30442082..30442087,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:30442082..30442087, -
5.42e-195FFCP PHASE2:Hg19::chr1:158989981..158989988,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:158989981..158989988, +
5.42e-195FFCP PHASE2:Hg19::chr12:71031310..71031321,-#_a94794a00b78c9028f3bf3b1af3efa58p14@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr3:1577586..1577600,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:1577586..1577600, -
5.42e-195FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_a94794a00b78c9028f3bf3b1af3efa58p5@GALR1
5.42e-195FFCP PHASE1:Hg19::chr12:80818234..80818245,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:80818234..80818245, +
5.42e-195FFCP PHASE2:Hg19::chr21:17357327..17357329,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr21:17357327..17357329, -
5.42e-195FFCP PHASE1:Hg19::chr6:152792957..152792960,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:152792957..152792960, -
5.42e-195FFCP PHASE1:Hg19::chr9:12848028..12848033,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr9:12848028..12848033, -
5.42e-195FFCP PHASE1:Hg19::chr3:177555440..177555446,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:177555440..177555446, -
5.42e-195FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_a94794a00b78c9028f3bf3b1af3efa58p7@LHX9
5.42e-195FFCP PHASE1:Hg19::chr19:56047661..56047668,-#_a94794a00b78c9028f3bf3b1af3efa58p4@SBK2
5.42e-195FFCP PHASE1:Hg19::chr18:22251696..22251702,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr18:22251696..22251702, -
5.42e-195FFCP PHASE2:Hg19::chrX:135338270..135338275,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:135338270..135338275, -
5.42e-195FFCP PHASE2:Hg19::chr6:152590257..152590288,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:152590257..152590288, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141993..2142006,+#_a94794a00b78c9028f3bf3b1af3efa58p6@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:154942376..154942386,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:154942376..154942386, -
5.42e-195FFCP PHASE1:Hg19::chr12:71031325..71031332,-#_a94794a00b78c9028f3bf3b1af3efa58p19@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr6:96913362..96913393,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:96913362..96913393, -
5.42e-195FFCP PHASE2:Hg19::chr5:39548606..39548614,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:39548606..39548614, -
5.42e-195FFCP PHASE2:Hg19::chr14:88322648..88322655,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr14:88322648..88322655, -
5.42e-195FFCP PHASE1:Hg19::chr6:152590052..152590068,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:152590052..152590068, -
5.42e-195FFCP PHASE1:Hg19::chr2:175614951..175614956,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:175614951..175614956, -
5.42e-195FFCP PHASE1:Hg19::chr3:1577559..1577577,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:1577559..1577577, -
5.42e-195FFCP PHASE1:Hg19::chr11:30253410..30253431,+#_a94794a00b78c9028f3bf3b1af3efa58p2@FSHB
5.42e-195FFCP PHASE2:Hg19::chr11:30252646..30252648,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr11:30252646..30252648, +
5.42e-195FFCP PHASE1:Hg19::chr2:206927691..206927699,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:206927691..206927699, -
5.42e-195FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:79920639..79920642, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141775..2141783,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141775..2141783, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589245..152589256,-#_a94794a00b78c9028f3bf3b1af3efa58p53@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr4:145101707..145101712,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:145101707..145101712, +
5.42e-195FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:33361438..33361453, -
5.42e-195FFCP PHASE1:Hg19::chr2:190023542..190023552,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr2:190023542..190023552, -
5.42e-195FFCP PHASE1:Hg19::chr14:88322648..88322655,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr14:88322648..88322655, -
5.42e-195FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2139856..2139863, +
5.42e-195FFCP PHASE2:Hg19::chr5:128083909..128083918,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr5:128083909..128083918, +
5.42e-195FFCP PHASE1:Hg19::chr6:150740842..150740854,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:150740842..150740854, +
5.42e-195FFCP PHASE1:Hg19::chr12:46884845..46884851,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:46884845..46884851, +
5.42e-195FFCP PHASE2:Hg19::chr7:80080929..80080934,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr7:80080929..80080934, +
5.42e-195FFCP PHASE2:Hg19::chr12:46884845..46884851,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:46884845..46884851, +
5.42e-195FFCP PHASE2:Hg19::chr2:27806224..27806236,+#_a94794a00b78c9028f3bf3b1af3efa58p5@ZNF512
5.42e-195FFCP PHASE1:Hg19::chr12:70351934..70351939,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:70351934..70351939, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141813..2141822,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141813..2141822, -
5.42e-195FFCP PHASE2:Hg19::chr12:70351971..70351975,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr12:70351971..70351975, +
5.42e-195FFCP PHASE1:Hg19::chr1:197890538..197890548,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:197890538..197890548, +
5.42e-195FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr6:142987388..142987398, -
5.42e-195FFCP PHASE2:Hg19::chr1:192408018..192408032,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr1:192408018..192408032, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700076..63700086,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700076..63700086, +
5.42e-195FFCP PHASE2:Hg19::chr10:63700043..63700053,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:63700043..63700053, +
5.42e-195FFCP PHASE1:Hg19::chrX:135338397..135338402,-#_a94794a00b78c9028f3bf3b1af3efa58p@chrX:135338397..135338402, -
5.42e-195FFCP PHASE2:Hg19::chr4:169935485..169935488,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr4:169935485..169935488, -
5.42e-195FFCP PHASE2:Hg19::chr1:145473286..145473295,+#_a94794a00b78c9028f3bf3b1af3efa58p5@AB464458
5.42e-195FFCP PHASE1:Hg19::chr3:163194047..163194081,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:163194047..163194081, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141888..2141892,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141888..2141892, -
5.42e-195FFCP PHASE2:Hg19::chr6:152589396..152589401,-#_a94794a00b78c9028f3bf3b1af3efa58p68@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr16:52581957..52581960,-#_a94794a00b78c9028f3bf3b1af3efa58p8@TOX3
5.42e-195FFCP PHASE1:Hg19::chr3:2141862..2141887,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr3:2141862..2141887, -
5.42e-195FFCP PHASE2:Hg19::chr14:88220703..88220709,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr14:88220703..88220709, -
5.42e-195FFCP PHASE2:Hg19::chr10:33244345..33244348,-#_a94794a00b78c9028f3bf3b1af3efa58p@chr10:33244345..33244348, -
5.42e-195FFCP PHASE1:Hg19::chr16:52581957..52581960,-#_a94794a00b78c9028f3bf3b1af3efa58p8@TOX3
5.42e-195FFCP PHASE2:Hg19::chr8:107074411..107074421,+#_a94794a00b78c9028f3bf3b1af3efa58p@chr8:107074411..107074421, +

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