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Difference between revisions of "DOID:3905"

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|located_in=
 
|located_in=
 
|name=lung carcinoma
 
|name=lung carcinoma
|namespace=disease_ontology
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=
 
|part_of=

Latest revision as of 07:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr15:97554594..97554599,-#_ff13f51a990286586a726a44f2e602cap@chr15:97554594..97554599, -
2.62e-23FFCP PHASE2:Hg19::chr12:84126726..84126727,-#_ff13f51a990286586a726a44f2e602cap@chr12:84126726..84126727, -
2.62e-23FFCP PHASE2:Hg19::chr2:222160741..222160750,+#_ff13f51a990286586a726a44f2e602cap@chr2:222160741..222160750, +
2.62e-23FFCP PHASE1:Hg19::chr17:9716257..9716264,-#_ff13f51a990286586a726a44f2e602cap@chr17:9716257..9716264, -
2.62e-23FFCP PHASE1:Hg19::chr14:36966895..36966899,-#_ff13f51a990286586a726a44f2e602cap@chr14:36966895..36966899, -
2.62e-23FFCP PHASE1:Hg19::chr2:97626499..97626505,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626499..97626505, -
2.62e-23FFCP PHASE2:Hg19::chr13:26155734..26155742,+#_ff13f51a990286586a726a44f2e602cap@chr13:26155734..26155742, +
2.62e-23FFCP PHASE1:Hg19::chr2:220695661..220695670,+#_ff13f51a990286586a726a44f2e602cap@chr2:220695661..220695670, +
2.62e-23FFCP PHASE2:Hg19::chr12:41186960..41186982,-#_ff13f51a990286586a726a44f2e602cap@chr12:41186960..41186982, -
2.62e-23FFCP PHASE1:Hg19::chr10:129704201..129704232,-#_ff13f51a990286586a726a44f2e602cap@chr10:129704201..129704232, -
2.62e-23FFCP PHASE2:Hg19::chrX:135761931..135761934,-#_ff13f51a990286586a726a44f2e602cap@chrX:135761931..135761934, -
2.62e-23FFCP PHASE1:Hg19::chr9:17454062..17454088,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454062..17454088, +
2.62e-23FFCP PHASE1:Hg19::chr3:95401649..95401655,-#_ff13f51a990286586a726a44f2e602cap3@ENST00000463799
2.62e-23FFCP PHASE1:Hg19::chr14:60194459..60194462,-#_ff13f51a990286586a726a44f2e602cap43@RTN1
2.62e-23FFCP PHASE2:Hg19::chr14:60194070..60194083,-#_ff13f51a990286586a726a44f2e602cap25@RTN1
2.62e-23FFCP PHASE1:Hg19::chr12:133040060..133040064,+#_ff13f51a990286586a726a44f2e602cap@chr12:133040060..133040064, +
2.62e-23FFCP PHASE2:Hg19::chr6:154858754..154858762,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858754..154858762, +
2.62e-23FFCP PHASE2:Hg19::chr10:129710296..129710320,-#_ff13f51a990286586a726a44f2e602cap@chr10:129710296..129710320, -
2.62e-23FFCP PHASE1:Hg19::chr17:70939741..70939790,-#_ff13f51a990286586a726a44f2e602cap@chr17:70939741..70939790, -
2.62e-23FFCP PHASE2:Hg19::chr3:63804973..63804980,+#_ff13f51a990286586a726a44f2e602cap3@C3orf49
2.62e-23FFCP PHASE2:Hg19::chr17:39140393..39140399,-#_ff13f51a990286586a726a44f2e602cap3@KRT40
2.62e-23FFCP PHASE2:Hg19::chr2:97626185..97626188,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626185..97626188, -
2.62e-23FFCP PHASE1:Hg19::chr2:241625621..241625629,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000407635
2.62e-23FFCP PHASE2:Hg19::chr10:29213612..29213644,+#_ff13f51a990286586a726a44f2e602cap@chr10:29213612..29213644, +
2.62e-23FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_ff13f51a990286586a726a44f2e602cap@chr13:76563913..76563916, +
2.62e-23FFCP PHASE2:Hg19::chr5:28572013..28572023,-#_ff13f51a990286586a726a44f2e602cap@chr5:28572013..28572023, -
2.62e-23FFCP PHASE1:Hg19::chr10:65730100..65730104,-#_ff13f51a990286586a726a44f2e602cap@chr10:65730100..65730104, -
2.62e-23FFCP PHASE2:Hg19::chr3:86703174..86703181,-#_ff13f51a990286586a726a44f2e602cap@chr3:86703174..86703181, -
2.62e-23FFCP PHASE1:Hg19::chr3:26426173..26426176,+#_ff13f51a990286586a726a44f2e602cap@chr3:26426173..26426176, +
2.62e-23FFCP PHASE2:Hg19::chr10:82723188..82723191,-#_ff13f51a990286586a726a44f2e602cap@chr10:82723188..82723191, -
2.62e-23FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_ff13f51a990286586a726a44f2e602cap9@CPXM1
2.62e-23FFCP PHASE1:Hg19::chr11:20362300..20362305,+#_ff13f51a990286586a726a44f2e602cap@chr11:20362300..20362305, +
2.62e-23FFCP PHASE1:Hg19::chrX:48394285..48394295,+#_ff13f51a990286586a726a44f2e602cap@chrX:48394285..48394295, +
2.62e-23FFCP PHASE2:Hg19::chr7:26590581..26590596,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590581..26590596, -
2.62e-23FFCP PHASE1:Hg19::chr10:121863383..121863387,-#_ff13f51a990286586a726a44f2e602cap@chr10:121863383..121863387, -
2.62e-23FFCP PHASE2:Hg19::chrX:10852011..10852021,-#_ff13f51a990286586a726a44f2e602cap27@MID1
2.62e-23FFCP PHASE1:Hg19::chr18:37420947..37420953,+#_ff13f51a990286586a726a44f2e602cap@chr18:37420947..37420953, +
2.62e-23FFCP PHASE1:Hg19::chr3:86701902..86701920,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701902..86701920, -
2.62e-23FFCP PHASE2:Hg19::chr8:98080543..98080550,-#_ff13f51a990286586a726a44f2e602cap@chr8:98080543..98080550, -
2.62e-23FFCP PHASE1:Hg19::chr8:72275738..72275747,-#_ff13f51a990286586a726a44f2e602cap@chr8:72275738..72275747, -
2.62e-23FFCP PHASE1:Hg19::chr14:59132994..59133018,+#_ff13f51a990286586a726a44f2e602cap@chr14:59132994..59133018, +
2.62e-23FFCP PHASE2:Hg19::chr14:58439259..58439262,-#_ff13f51a990286586a726a44f2e602cap@chr14:58439259..58439262, -
2.62e-23FFCP PHASE1:Hg19::chr2:103235132..103235142,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235132..103235142, +
2.62e-23FFCP PHASE1:Hg19::chr6:23637684..23637686,-#_ff13f51a990286586a726a44f2e602cap@chr6:23637684..23637686, -
2.62e-23FFCP PHASE2:Hg19::chr21:26151976..26151979,+#_ff13f51a990286586a726a44f2e602cap@chr21:26151976..26151979, +
2.62e-23FFCP PHASE2:Hg19::chr10:129703392..129703416,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703392..129703416, +
2.62e-23FFCP PHASE1:Hg19::chr8:116215608..116215615,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215608..116215615, +
2.62e-23FFCP PHASE2:Hg19::chr7:79840117..79840122,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840117..79840122, +
2.62e-23FFCP PHASE1:Hg19::chr7:26482694..26482710,-#_ff13f51a990286586a726a44f2e602cap@chr7:26482694..26482710, -
2.62e-23FFCP PHASE2:Hg19::chr12:58158560..58158567,-#_ff13f51a990286586a726a44f2e602cap@chr12:58158560..58158567, -
2.62e-23FFCP PHASE2:Hg19::chr1:33705218..33705225,-#_ff13f51a990286586a726a44f2e602cap@chr1:33705218..33705225, -
2.62e-23FFCP PHASE1:Hg19::chrX:105065622..105065627,+#_ff13f51a990286586a726a44f2e602cap@chrX:105065622..105065627, +
2.62e-23FFCP PHASE2:Hg19::chr4:3344577..3344588,+#_ff13f51a990286586a726a44f2e602cap@chr4:3344577..3344588, +
2.62e-23FFCP PHASE2:Hg19::chr15:91143571..91143582,+#_ff13f51a990286586a726a44f2e602cap@chr15:91143571..91143582, +
2.62e-23FFCP PHASE2:Hg19::chr12:75174802..75174809,+#_ff13f51a990286586a726a44f2e602cap@chr12:75174802..75174809, +
2.62e-23FFCP PHASE2:Hg19::chr2:220594691..220594695,+#_ff13f51a990286586a726a44f2e602cap4@ENST00000442416
2.62e-23FFCP PHASE1:Hg19::chr16:7428243..7428259,+#_ff13f51a990286586a726a44f2e602cap@chr16:7428243..7428259, +
2.62e-23FFCP PHASE2:Hg19::chr3:102635409..102635414,-#_ff13f51a990286586a726a44f2e602cap@chr3:102635409..102635414, -
2.62e-23FFCP PHASE1:Hg19::chr6:140771120..140771128,+#_ff13f51a990286586a726a44f2e602cap@chr6:140771120..140771128, +
2.62e-23FFCP PHASE2:Hg19::chr7:95776211..95776254,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776211..95776254, -