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{{DOID
 
{{DOID
|id=DOID:3905
+
|alt_id=
|name=lung carcinoma
 
|namespace=disease_ontology
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
 
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
|is_a=DOID:1324
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 
 
|comment=OMIM mapping confirmed by DO. [SN].
 
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=DOID:3905
 +
|is_a=DOID:1324
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=lung carcinoma
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 +
|union_of=
 +
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
}}
 
}}

Latest revision as of 07:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr14:60194331..60194336,-#_ff13f51a990286586a726a44f2e602cap36@RTN1
2.62e-23FFCP PHASE2:Hg19::chr8:97962018..97962029,-#_ff13f51a990286586a726a44f2e602cap@chr8:97962018..97962029, -
2.62e-23FFCP PHASE1:Hg19::chr14:36966895..36966899,-#_ff13f51a990286586a726a44f2e602cap@chr14:36966895..36966899, -
2.62e-23FFCP PHASE2:Hg19::chr2:135169581..135169587,+#_ff13f51a990286586a726a44f2e602cap@chr2:135169581..135169587, +
2.62e-23FFCP PHASE2:Hg19::chr10:36850273..36850276,-#_ff13f51a990286586a726a44f2e602cap@chr10:36850273..36850276, -
2.62e-23FFCP PHASE1:Hg19::chrX:135761931..135761934,-#_ff13f51a990286586a726a44f2e602cap@chrX:135761931..135761934, -
2.62e-23FFCP PHASE1:Hg19::chr10:129704201..129704232,-#_ff13f51a990286586a726a44f2e602cap@chr10:129704201..129704232, -
2.62e-23FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000430271
2.62e-23FFCP PHASE2:Hg19::chr12:84664662..84664670,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000547882
2.62e-23FFCP PHASE1:Hg19::chr4:178653531..178653568,+#_ff13f51a990286586a726a44f2e602cap@chr4:178653531..178653568, +
2.62e-23FFCP PHASE1:Hg19::chr12:133040060..133040064,+#_ff13f51a990286586a726a44f2e602cap@chr12:133040060..133040064, +
2.62e-23FFCP PHASE1:Hg19::chr3:63804973..63804980,+#_ff13f51a990286586a726a44f2e602cap3@C3orf49
2.62e-23FFCP PHASE2:Hg19::chr7:111234799..111234807,-#_ff13f51a990286586a726a44f2e602cap@chr7:111234799..111234807, -
2.62e-23FFCP PHASE1:Hg19::chr14:57127818..57127825,+#_ff13f51a990286586a726a44f2e602cap@chr14:57127818..57127825, +
2.62e-23FFCP PHASE1:Hg19::chr5:28572013..28572023,-#_ff13f51a990286586a726a44f2e602cap@chr5:28572013..28572023, -
2.62e-23FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_ff13f51a990286586a726a44f2e602cap@chr13:76563913..76563916, +
2.62e-23FFCP PHASE1:Hg19::chr10:65730100..65730104,-#_ff13f51a990286586a726a44f2e602cap@chr10:65730100..65730104, -
2.62e-23FFCP PHASE2:Hg19::chr2:97626588..97626595,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626588..97626595, -
2.62e-23FFCP PHASE1:Hg19::chr2:222160741..222160750,+#_ff13f51a990286586a726a44f2e602cap@chr2:222160741..222160750, +
2.62e-23FFCP PHASE2:Hg19::chr12:46124855..46124858,+#_ff13f51a990286586a726a44f2e602cap@chr12:46124855..46124858, +
2.62e-23FFCP PHASE1:Hg19::chr18:61368086..61368120,+#_ff13f51a990286586a726a44f2e602cap@chr18:61368086..61368120, +
2.62e-23FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_ff13f51a990286586a726a44f2e602cap9@CPXM1
2.62e-23FFCP PHASE2:Hg19::chr8:85893922..85893940,+#_ff13f51a990286586a726a44f2e602cap@chr8:85893922..85893940, +
2.62e-23FFCP PHASE2:Hg19::chr10:129704395..129704457,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704395..129704457, +
2.62e-23FFCP PHASE2:Hg19::chr17:63528638..63528642,+#_ff13f51a990286586a726a44f2e602cap@chr17:63528638..63528642, +
2.62e-23FFCP PHASE1:Hg19::chr11:20362300..20362305,+#_ff13f51a990286586a726a44f2e602cap@chr11:20362300..20362305, +
2.62e-23FFCP PHASE2:Hg19::chr6:33644021..33644058,+#_ff13f51a990286586a726a44f2e602cap@chr6:33644021..33644058, +
2.62e-23FFCP PHASE2:Hg19::chr6:125378772..125378777,+#_ff13f51a990286586a726a44f2e602cap@chr6:125378772..125378777, +
2.62e-23FFCP PHASE1:Hg19::chr7:26590581..26590596,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590581..26590596, -
2.62e-23FFCP PHASE2:Hg19::chr17:70940275..70940283,+#_ff13f51a990286586a726a44f2e602cap@chr17:70940275..70940283, +
2.62e-23FFCP PHASE1:Hg19::chrX:10852011..10852021,-#_ff13f51a990286586a726a44f2e602cap27@MID1
2.62e-23FFCP PHASE1:Hg19::chr10:121863383..121863387,-#_ff13f51a990286586a726a44f2e602cap@chr10:121863383..121863387, -
2.62e-23FFCP PHASE2:Hg19::chr1:188874798..188874820,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000445072
2.62e-23FFCP PHASE2:Hg19::chrX:135761853..135761876,-#_ff13f51a990286586a726a44f2e602cap@chrX:135761853..135761876, -
2.62e-23FFCP PHASE1:Hg19::chr21:26151976..26151979,+#_ff13f51a990286586a726a44f2e602cap@chr21:26151976..26151979, +
2.62e-23FFCP PHASE2:Hg19::chr4:160189282..160189289,+#_ff13f51a990286586a726a44f2e602cap38@RAPGEF2
2.62e-23FFCP PHASE1:Hg19::chr17:79974020..79974025,+#_ff13f51a990286586a726a44f2e602cap@chr17:79974020..79974025, +
2.62e-23FFCP PHASE2:Hg19::chr6:998859..998863,-#_ff13f51a990286586a726a44f2e602cap@chr6:998859..998863, -
2.62e-23FFCP PHASE2:Hg19::chr21:38295313..38295326,-#_ff13f51a990286586a726a44f2e602cap@chr21:38295313..38295326, -
2.62e-23FFCP PHASE1:Hg19::chr6:154858754..154858762,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858754..154858762, +
2.62e-23FFCP PHASE2:Hg19::chr6:154858693..154858698,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858693..154858698, +
2.62e-23FFCP PHASE1:Hg19::chr1:33705218..33705225,-#_ff13f51a990286586a726a44f2e602cap@chr1:33705218..33705225, -
2.62e-23FFCP PHASE1:Hg19::chr17:39140411..39140419,-#_ff13f51a990286586a726a44f2e602cap5@KRT40
2.62e-23FFCP PHASE1:Hg19::chr2:97626185..97626188,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626185..97626188, -
2.62e-23FFCP PHASE2:Hg19::chr2:97626065..97626084,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626065..97626084, -
2.62e-23FFCP PHASE2:Hg19::chr7:84651827..84651832,-#_ff13f51a990286586a726a44f2e602cap@chr7:84651827..84651832, -
2.62e-23FFCP PHASE1:Hg19::chr2:220594691..220594695,+#_ff13f51a990286586a726a44f2e602cap4@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr5:28571974..28571978,-#_ff13f51a990286586a726a44f2e602cap@chr5:28571974..28571978, -
2.62e-23FFCP PHASE2:Hg19::chr12:27925654..27925663,-#_ff13f51a990286586a726a44f2e602cap@chr12:27925654..27925663, -
2.62e-23FFCP PHASE2:Hg19::chr1:144618112..144618116,+#_ff13f51a990286586a726a44f2e602cap4@NBPF8
2.62e-23FFCP PHASE2:Hg19::chr15:97503439..97503472,+#_ff13f51a990286586a726a44f2e602cap@chr15:97503439..97503472, +
2.62e-23FFCP PHASE2:Hg19::chr2:222127471..222127478,-#_ff13f51a990286586a726a44f2e602cap@chr2:222127471..222127478, -
2.62e-23FFCP PHASE1:Hg19::chr3:86703174..86703181,-#_ff13f51a990286586a726a44f2e602cap@chr3:86703174..86703181, -
2.62e-23FFCP PHASE1:Hg19::chr14:60194267..60194275,-#_ff13f51a990286586a726a44f2e602cap20@RTN1
2.62e-23FFCP PHASE2:Hg19::chr14:59113338..59113345,+#_ff13f51a990286586a726a44f2e602cap@chr14:59113338..59113345, +
2.62e-23FFCP PHASE2:Hg19::chr13:92571088..92571098,-#_ff13f51a990286586a726a44f2e602cap@chr13:92571088..92571098, -
2.62e-23FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590563..26590574, -
2.62e-23FFCP PHASE1:Hg19::chr8:98015616..98015617,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015616..98015617, -
2.62e-23FFCP PHASE1:Hg19::chr20:54101133..54101144,+#_ff13f51a990286586a726a44f2e602cap@chr20:54101133..54101144, +
2.62e-23FFCP PHASE1:Hg19::chr8:98080543..98080550,-#_ff13f51a990286586a726a44f2e602cap@chr8:98080543..98080550, -