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{{DOID
 
{{DOID
|id=DOID:3905
+
|alt_id=
|name=lung carcinoma
 
|namespace=disease_ontology
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
 
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
|is_a=DOID:1324
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 
 
|comment=OMIM mapping confirmed by DO. [SN].
 
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=DOID:3905
 +
|is_a=DOID:1324
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=lung carcinoma
 +
|namespace=disease_ontology
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 +
|union_of=
 +
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
}}
 
}}

Revision as of 01:35, 12 September 2014

Name:lung carcinoma
Namespace:disease_ontology
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE1:Hg19::chr14:58448696..58448733,-#_ff13f51a990286586a726a44f2e602cap9@SLC35F4
2.62e-23FFCP PHASE2:Hg19::chr14:58045800..58045814,-#_ff13f51a990286586a726a44f2e602cap@chr14:58045800..58045814, -
2.62e-23FFCP PHASE2:Hg19::chr17:79970753..79970763,+#_ff13f51a990286586a726a44f2e602cap15@ASPSCR1
2.62e-23FFCP PHASE1:Hg19::chr8:100549773..100549807,-#_ff13f51a990286586a726a44f2e602cap@chr8:100549773..100549807, -
2.62e-23FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_ff13f51a990286586a726a44f2e602cap@chr17:13574618..13574636, -
2.62e-23FFCP PHASE2:Hg19::chr13:92571088..92571098,-#_ff13f51a990286586a726a44f2e602cap@chr13:92571088..92571098, -
2.62e-23FFCP PHASE2:Hg19::chr7:7749088..7749127,+#_ff13f51a990286586a726a44f2e602cap@chr7:7749088..7749127, +
2.62e-23FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_ff13f51a990286586a726a44f2e602cap1@SSX5
2.62e-23FFCP PHASE1:Hg19::chr8:98015616..98015617,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015616..98015617, -
2.62e-23FFCP PHASE2:Hg19::chr15:89655929..89655934,+#_ff13f51a990286586a726a44f2e602cap@chr15:89655929..89655934, +
2.62e-23FFCP PHASE1:Hg19::chr20:54101133..54101144,+#_ff13f51a990286586a726a44f2e602cap@chr20:54101133..54101144, +
2.62e-23FFCP PHASE1:Hg19::chr13:95133382..95133389,-#_ff13f51a990286586a726a44f2e602cap@chr13:95133382..95133389, -
2.62e-23FFCP PHASE1:Hg19::chr8:98080543..98080550,-#_ff13f51a990286586a726a44f2e602cap@chr8:98080543..98080550, -
2.62e-23FFCP PHASE2:Hg19::chr3:86701885..86701893,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701885..86701893, -
2.62e-23FFCP PHASE2:Hg19::chr3:115898365..115898379,+#_ff13f51a990286586a726a44f2e602cap@chr3:115898365..115898379, +
2.62e-23FFCP PHASE2:Hg19::chr20:13085064..13085070,+#_ff13f51a990286586a726a44f2e602cap@chr20:13085064..13085070, +
2.62e-23FFCP PHASE2:Hg19::chr1:168756151..168756165,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000420691
2.62e-23FFCP PHASE2:Hg19::chr8:116215335..116215378,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215335..116215378, +
2.62e-23FFCP PHASE1:Hg19::chr7:79840117..79840122,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840117..79840122, +
2.62e-23FFCP PHASE2:Hg19::chr16:50553120..50553126,-#_ff13f51a990286586a726a44f2e602cap@chr16:50553120..50553126, -
2.62e-23FFCP PHASE1:Hg19::chr2:202413051..202413061,-#_ff13f51a990286586a726a44f2e602cap@chr2:202413051..202413061, -
2.62e-23FFCP PHASE2:Hg19::chr1:181360920..181360925,+#_ff13f51a990286586a726a44f2e602cap@chr1:181360920..181360925, +
2.62e-23FFCP PHASE1:Hg19::chr4:3344577..3344588,+#_ff13f51a990286586a726a44f2e602cap@chr4:3344577..3344588, +
2.62e-23FFCP PHASE2:Hg19::chr9:97856010..97856019,+#_ff13f51a990286586a726a44f2e602cap@chr9:97856010..97856019, +
2.62e-23FFCP PHASE1:Hg19::chr18:33311016..33311032,-#_ff13f51a990286586a726a44f2e602cap@chr18:33311016..33311032, -
2.62e-23FFCP PHASE2:Hg19::chr8:98065877..98065881,-#_ff13f51a990286586a726a44f2e602cap@chr8:98065877..98065881, -
2.62e-23FFCP PHASE1:Hg19::chr8:57526601..57526612,+#_ff13f51a990286586a726a44f2e602cap@chr8:57526601..57526612, +
2.62e-23FFCP PHASE1:Hg19::chr5:5558678..5558683,+#_ff13f51a990286586a726a44f2e602cap@chr5:5558678..5558683, +
2.62e-23FFCP PHASE1:Hg19::chr10:129704382..129704389,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704382..129704389, +
2.62e-23FFCP PHASE1:Hg19::chr3:102635409..102635414,-#_ff13f51a990286586a726a44f2e602cap@chr3:102635409..102635414, -
2.62e-23FFCP PHASE2:Hg19::chr8:129431377..129431384,-#_ff13f51a990286586a726a44f2e602cap@chr8:129431377..129431384, -
2.62e-23FFCP PHASE1:Hg19::chr7:95776211..95776254,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776211..95776254, -
2.62e-23FFCP PHASE2:Hg19::chr13:76549637..76549662,+#_ff13f51a990286586a726a44f2e602cap@chr13:76549637..76549662, +
2.62e-23FFCP PHASE1:Hg19::chr16:13010590..13010593,+#_ff13f51a990286586a726a44f2e602cap@chr16:13010590..13010593, +
2.62e-23FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000430271
2.62e-23FFCP PHASE1:Hg19::chr7:158242968..158242975,+#_ff13f51a990286586a726a44f2e602cap@chr7:158242968..158242975, +
2.62e-23FFCP PHASE2:Hg19::chr4:178653531..178653568,+#_ff13f51a990286586a726a44f2e602cap@chr4:178653531..178653568, +
2.62e-23FFCP PHASE1:Hg19::chr8:97961177..97961185,-#_ff13f51a990286586a726a44f2e602cap@chr8:97961177..97961185, -
2.62e-23FFCP PHASE2:Hg19::chr15:62007373..62007374,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000559590
2.62e-23FFCP PHASE2:Hg19::chr7:120378721..120378730,-#_ff13f51a990286586a726a44f2e602cap@chr7:120378721..120378730, -
2.62e-23FFCP PHASE1:Hg19::chr13:76688920..76688924,+#_ff13f51a990286586a726a44f2e602cap@chr13:76688920..76688924, +
2.62e-23FFCP PHASE1:Hg19::chr10:65821760..65821780,+#_ff13f51a990286586a726a44f2e602cap@chr10:65821760..65821780, +
2.62e-23FFCP PHASE2:Hg19::chr3:77129779..77129782,+#_ff13f51a990286586a726a44f2e602cap@chr3:77129779..77129782, +
2.62e-23FFCP PHASE1:Hg19::chr2:33589897..33589917,+#_ff13f51a990286586a726a44f2e602cap@chr2:33589897..33589917, +
2.62e-23FFCP PHASE2:Hg19::chr1:81686906..81686911,+#_ff13f51a990286586a726a44f2e602cap@chr1:81686906..81686911, +
2.62e-23FFCP PHASE2:Hg19::chr5:6961030..6961034,+#_ff13f51a990286586a726a44f2e602cap@chr5:6961030..6961034, +
2.62e-23FFCP PHASE1:Hg19::chr7:68735137..68735150,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735137..68735150, +
2.62e-23FFCP PHASE2:Hg19::chr16:13010571..13010578,+#_ff13f51a990286586a726a44f2e602cap@chr16:13010571..13010578, +
2.62e-23FFCP PHASE2:Hg19::chr12:88178319..88178329,-#_ff13f51a990286586a726a44f2e602cap2@MKRN9P
2.62e-23FFCP PHASE2:Hg19::chr2:234862409..234862414,+#_ff13f51a990286586a726a44f2e602cap14@TRPM8
2.62e-23FFCP PHASE1:Hg19::chr2:192805223..192805230,+#_ff13f51a990286586a726a44f2e602cap@chr2:192805223..192805230, +
2.62e-23FFCP PHASE1:Hg19::chr9:129291797..129291800,-#_ff13f51a990286586a726a44f2e602cap@chr9:129291797..129291800, -
2.62e-23FFCP PHASE2:Hg19::chr18:73967160..73967162,-#_ff13f51a990286586a726a44f2e602cap@chr18:73967160..73967162, -
2.62e-23FFCP PHASE1:Hg19::chr11:41519057..41519065,-#_ff13f51a990286586a726a44f2e602cap@chr11:41519057..41519065, -
2.62e-23FFCP PHASE1:Hg19::chr18:10085799..10085809,+#_ff13f51a990286586a726a44f2e602cap@chr18:10085799..10085809, +
2.62e-23FFCP PHASE2:Hg19::chr8:97964849..97964868,-#_ff13f51a990286586a726a44f2e602cap@chr8:97964849..97964868, -
2.62e-23FFCP PHASE2:Hg19::chr14:57021818..57021822,+#_ff13f51a990286586a726a44f2e602cap@chr14:57021818..57021822, +
2.62e-23FFCP PHASE2:Hg19::chr6:45398505..45398508,+#_ff13f51a990286586a726a44f2e602cap@chr6:45398505..45398508, +
2.62e-23FFCP PHASE1:Hg19::chr6:17845348..17845358,-#_ff13f51a990286586a726a44f2e602cap@chr6:17845348..17845358, -
2.62e-23FFCP PHASE1:Hg19::chr1:68927028..68927036,-#_ff13f51a990286586a726a44f2e602cap@chr1:68927028..68927036, -