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(Created page with "{{DOID |id=DOID:3905 |name=lung carcinoma |namespace= |def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and h...")
 
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|id=DOID:3905
 
|id=DOID:3905
 
|name=lung carcinoma
 
|name=lung carcinoma
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|namespace=
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|namespace=disease_ontology
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
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|xref=
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|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
|is_a=DOID:1324
 
|is_a=DOID:1324
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
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|comment=
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|comment=OMIM mapping confirmed by DO. [SN].
 
|alt_id=
 
|alt_id=
 
|disjoint_from=
 
|disjoint_from=
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|located_in=
 
|located_in=
 
|part_of=
 
|part_of=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
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|is_obsolete=
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|preceded_by=
 
}}
 
}}

Revision as of 05:00, 11 June 2012

Name:lung carcinoma
Namespace:disease_ontology
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE1:Hg19::chr17:79973593..79973633,-#_ff13f51a990286586a726a44f2e602cap@chr17:79973593..79973633, -
2.62e-23FFCP PHASE1:Hg19::chr10:36850273..36850276,-#_ff13f51a990286586a726a44f2e602cap@chr10:36850273..36850276, -
2.62e-23FFCP PHASE1:Hg19::chr2:97625602..97625628,-#_ff13f51a990286586a726a44f2e602cap@chr2:97625602..97625628, -
2.62e-23FFCP PHASE1:Hg19::chr7:84390545..84390550,+#_ff13f51a990286586a726a44f2e602cap@chr7:84390545..84390550, +
2.62e-23FFCP PHASE1:Hg19::chr12:84664596..84664600,+#_ff13f51a990286586a726a44f2e602cap@chr12:84664596..84664600, +
2.62e-23FFCP PHASE1:Hg19::chr4:41749788..41749795,-#_ff13f51a990286586a726a44f2e602cap10@PHOX2B
2.62e-23FFCP PHASE1:Hg19::chr18:39258990..39258996,-#_ff13f51a990286586a726a44f2e602cap@chr18:39258990..39258996, -
2.62e-23FFCP PHASE2:Hg19::chr2:220695661..220695670,+#_ff13f51a990286586a726a44f2e602cap@chr2:220695661..220695670, +
2.62e-23FFCP PHASE1:Hg19::chr3:86701921..86701925,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701921..86701925, -
2.62e-23FFCP PHASE1:Hg19::chr8:72938203..72938230,+#_ff13f51a990286586a726a44f2e602cap@chr8:72938203..72938230, +
2.62e-23FFCP PHASE2:Hg19::chr14:58448696..58448733,-#_ff13f51a990286586a726a44f2e602cap9@SLC35F4
2.62e-23FFCP PHASE1:Hg19::chr2:103235211..103235247,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235211..103235247, +
2.62e-23FFCP PHASE2:Hg19::chr2:103235132..103235142,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235132..103235142, +
2.62e-23FFCP PHASE2:Hg19::chr6:23637684..23637686,-#_ff13f51a990286586a726a44f2e602cap@chr6:23637684..23637686, -
2.62e-23FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454062..17454088, +
2.62e-23FFCP PHASE2:Hg19::chr3:95401649..95401655,-#_ff13f51a990286586a726a44f2e602cap3@ENST00000463799
2.62e-23FFCP PHASE2:Hg19::chr10:129703430..129703445,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703430..129703445, +
2.62e-23FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_ff13f51a990286586a726a44f2e602cap@chr17:63511856..63511858, -
2.62e-23FFCP PHASE1:Hg19::chr7:26482715..26482738,-#_ff13f51a990286586a726a44f2e602cap@chr7:26482715..26482738, -
2.62e-23FFCP PHASE2:Hg19::chr2:241625621..241625629,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000407635
2.62e-23FFCP PHASE2:Hg19::chr12:76206813..76206837,-#_ff13f51a990286586a726a44f2e602cap@chr12:76206813..76206837, -
2.62e-23FFCP PHASE2:Hg19::chr11:86502231..86502240,-#_ff13f51a990286586a726a44f2e602cap@chr11:86502231..86502240, -
2.62e-23FFCP PHASE1:Hg19::chr21:11130568..11130575,+#_ff13f51a990286586a726a44f2e602cap@chr21:11130568..11130575, +
2.62e-23FFCP PHASE2:Hg19::chr6:140771120..140771128,+#_ff13f51a990286586a726a44f2e602cap@chr6:140771120..140771128, +
2.62e-23FFCP PHASE1:Hg19::chr1:225650299..225650317,-#_ff13f51a990286586a726a44f2e602cap@chr1:225650299..225650317, -
2.62e-23FFCP PHASE2:Hg19::chr3:26426173..26426176,+#_ff13f51a990286586a726a44f2e602cap@chr3:26426173..26426176, +
2.62e-23FFCP PHASE1:Hg19::chr2:68113370..68113379,-#_ff13f51a990286586a726a44f2e602cap@chr2:68113370..68113379, -
2.62e-23FFCP PHASE2:Hg19::chr7:79765099..79765103,+#_ff13f51a990286586a726a44f2e602cap29@GNAI1
2.62e-23FFCP PHASE2:Hg19::chr13:104517168..104517170,+#_ff13f51a990286586a726a44f2e602cap@chr13:104517168..104517170, +
2.62e-23FFCP PHASE1:Hg19::chr15:85564362..85564385,+#_ff13f51a990286586a726a44f2e602cap@chr15:85564362..85564385, +
2.62e-23FFCP PHASE1:Hg19::chr2:194837773..194837784,-#_ff13f51a990286586a726a44f2e602cap@chr2:194837773..194837784, -
2.62e-23FFCP PHASE1:Hg19::chr7:120379758..120379765,+#_ff13f51a990286586a726a44f2e602cap@chr7:120379758..120379765, +
2.62e-23FFCP PHASE2:Hg19::chrX:48394285..48394295,+#_ff13f51a990286586a726a44f2e602cap@chrX:48394285..48394295, +
2.62e-23FFCP PHASE1:Hg19::chr3:78334430..78334433,-#_ff13f51a990286586a726a44f2e602cap@chr3:78334430..78334433, -
2.62e-23FFCP PHASE2:Hg19::chr18:37331745..37331763,-#_ff13f51a990286586a726a44f2e602cap@chr18:37331745..37331763, -
2.62e-23FFCP PHASE2:Hg19::chr3:86701902..86701920,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701902..86701920, -
2.62e-23FFCP PHASE2:Hg19::chr8:72275738..72275747,-#_ff13f51a990286586a726a44f2e602cap@chr8:72275738..72275747, -
2.62e-23FFCP PHASE1:Hg19::chr16:3332452..3332454,+#_ff13f51a990286586a726a44f2e602cap@chr16:3332452..3332454, +
2.62e-23FFCP PHASE1:Hg19::chr2:234862436..234862439,+#_ff13f51a990286586a726a44f2e602cap16@TRPM8
2.62e-23FFCP PHASE2:Hg19::chr12:54535470..54535475,+#_ff13f51a990286586a726a44f2e602cap@chr12:54535470..54535475, +
2.62e-23FFCP PHASE2:Hg19::chr1:168756303..168756308,+#_ff13f51a990286586a726a44f2e602cap1@MGC4473
2.62e-23FFCP PHASE2:Hg19::chr8:116215608..116215615,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215608..116215615, +
2.62e-23FFCP PHASE2:Hg19::chr7:26482694..26482710,-#_ff13f51a990286586a726a44f2e602cap@chr7:26482694..26482710, -
2.62e-23FFCP PHASE1:Hg19::chr8:97972117..97972120,-#_ff13f51a990286586a726a44f2e602cap@chr8:97972117..97972120, -
2.62e-23FFCP PHASE2:Hg19::chrX:105065622..105065627,+#_ff13f51a990286586a726a44f2e602cap@chrX:105065622..105065627, +
2.62e-23FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_ff13f51a990286586a726a44f2e602cap1@ENST00000418699, p1@ENST00000432330
2.62e-23FFCP PHASE1:Hg19::chr8:98070371..98070384,-#_ff13f51a990286586a726a44f2e602cap@chr8:98070371..98070384, -
2.62e-23FFCP PHASE2:Hg19::chr8:98066259..98066270,-#_ff13f51a990286586a726a44f2e602cap@chr8:98066259..98066270, -
2.62e-23FFCP PHASE1:Hg19::chr3:1991867..1991875,-#_ff13f51a990286586a726a44f2e602cap@chr3:1991867..1991875, -
2.62e-23FFCP PHASE1:Hg19::chr8:139510692..139510697,-#_ff13f51a990286586a726a44f2e602cap@chr8:139510692..139510697, -
2.62e-23FFCP PHASE2:Hg19::chr16:7411388..7411391,+#_ff13f51a990286586a726a44f2e602cap@chr16:7411388..7411391, +
2.62e-23FFCP PHASE1:Hg19::chr10:129704395..129704457,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704395..129704457, +
2.62e-23FFCP PHASE1:Hg19::chr7:68735026..68735050,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735026..68735050, +
2.62e-23FFCP PHASE2:Hg19::chr12:84664700..84664710,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000547882
2.62e-23FFCP PHASE1:Hg19::chr2:189756256..189756260,+#_ff13f51a990286586a726a44f2e602cap@chr2:189756256..189756260, +
2.62e-23FFCP PHASE2:Hg19::chr4:185426203..185426209,-#_ff13f51a990286586a726a44f2e602cap@chr4:185426203..185426209, -
2.62e-23FFCP PHASE2:Hg19::chr9:125306070..125306106,+#_ff13f51a990286586a726a44f2e602cap@chr9:125306070..125306106, +
2.62e-23FFCP PHASE1:Hg19::chr3:63805044..63805054,+#_ff13f51a990286586a726a44f2e602cap1@C3orf49
2.62e-23FFCP PHASE2:Hg19::chr7:120378742..120378768,-#_ff13f51a990286586a726a44f2e602cap@chr7:120378742..120378768, -
2.62e-23FFCP PHASE1:Hg19::chr6:169224860..169224875,+#_ff13f51a990286586a726a44f2e602cap@chr6:169224860..169224875, +

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