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{{DOID
 
{{DOID
|id=DOID:3905
+
|alt_id=
|name=lung carcinoma
 
|namespace=disease_ontology
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
 
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
|is_a=DOID:1324
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 
 
|comment=OMIM mapping confirmed by DO. [SN].
 
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=DOID:3905
 +
|is_a=DOID:1324
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=lung carcinoma
 +
|namespace=disease_ontology
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 +
|union_of=
 +
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
}}
 
}}

Revision as of 01:35, 12 September 2014

Name:lung carcinoma
Namespace:disease_ontology
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr2:75145327..75145329,+#_ff13f51a990286586a726a44f2e602cap9@ENST00000435984
2.62e-23FFCP PHASE1:Hg19::chr7:79840276..79840283,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840276..79840283, +
2.62e-23FFCP PHASE2:Hg19::chr7:79840127..79840130,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840127..79840130, +
2.62e-23FFCP PHASE2:Hg19::chr1:33886864..33886872,-#_ff13f51a990286586a726a44f2e602cap@chr1:33886864..33886872, -
2.62e-23FFCP PHASE1:Hg19::chr2:208001650..208001675,-#_ff13f51a990286586a726a44f2e602cap@chr2:208001650..208001675, -
2.62e-23FFCP PHASE2:Hg19::chrX:69542573..69542578,+#_ff13f51a990286586a726a44f2e602cap@chrX:69542573..69542578, +
2.62e-23FFCP PHASE2:Hg19::chr12:133040060..133040064,+#_ff13f51a990286586a726a44f2e602cap@chr12:133040060..133040064, +
2.62e-23FFCP PHASE1:Hg19::chr4:3838289..3838308,-#_ff13f51a990286586a726a44f2e602cap@chr4:3838289..3838308, -
2.62e-23FFCP PHASE2:Hg19::chr4:37653629..37653673,-#_ff13f51a990286586a726a44f2e602cap@chr4:37653629..37653673, -
2.62e-23FFCP PHASE2:Hg19::chr9:138393225..138393257,+#_ff13f51a990286586a726a44f2e602cap@chr9:138393225..138393257, +
2.62e-23FFCP PHASE2:Hg19::chr2:220594700..220594702,+#_ff13f51a990286586a726a44f2e602cap6@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr6:22113639..22113643,+#_ff13f51a990286586a726a44f2e602cap@chr6:22113639..22113643, +
2.62e-23FFCP PHASE1:Hg19::chr17:58979826..58979836,+#_ff13f51a990286586a726a44f2e602cap@chr17:58979826..58979836, +
2.62e-23FFCP PHASE1:Hg19::chr16:50553120..50553126,-#_ff13f51a990286586a726a44f2e602cap@chr16:50553120..50553126, -
2.62e-23FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_ff13f51a990286586a726a44f2e602cap13@CPXM1
2.62e-23FFCP PHASE1:Hg19::chr2:23850222..23850227,+#_ff13f51a990286586a726a44f2e602cap@chr2:23850222..23850227, +
2.62e-23FFCP PHASE1:Hg19::chr7:21209872..21209910,+#_ff13f51a990286586a726a44f2e602cap@chr7:21209872..21209910, +
2.62e-23FFCP PHASE2:Hg19::chr7:26590606..26590616,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590606..26590616, -
2.62e-23FFCP PHASE2:Hg19::chr5:134907210..134907215,-#_ff13f51a990286586a726a44f2e602cap@chr5:134907210..134907215, -
2.62e-23FFCP PHASE2:Hg19::chr19:46531064..46531073,+#_ff13f51a990286586a726a44f2e602cap@chr19:46531064..46531073, +
2.62e-23FFCP PHASE1:Hg19::chr8:98104439..98104444,-#_ff13f51a990286586a726a44f2e602cap@chr8:98104439..98104444, -
2.62e-23FFCP PHASE2:Hg19::chr8:98103977..98103981,-#_ff13f51a990286586a726a44f2e602cap@chr8:98103977..98103981, -
2.62e-23FFCP PHASE2:Hg19::chr6:145434485..145434492,+#_ff13f51a990286586a726a44f2e602cap@chr6:145434485..145434492, +
2.62e-23FFCP PHASE2:Hg19::chr17:79974020..79974025,+#_ff13f51a990286586a726a44f2e602cap@chr17:79974020..79974025, +
2.62e-23FFCP PHASE1:Hg19::chr14:25326297..25326305,-#_ff13f51a990286586a726a44f2e602cap@chr14:25326297..25326305, -
2.62e-23FFCP PHASE1:Hg19::chr10:29213612..29213644,+#_ff13f51a990286586a726a44f2e602cap@chr10:29213612..29213644, +
2.62e-23FFCP PHASE1:Hg19::chr1:100110851..100110860,+#_ff13f51a990286586a726a44f2e602cap@chr1:100110851..100110860, +
2.62e-23FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_ff13f51a990286586a726a44f2e602cap@chr1:100110807..100110818, +
2.62e-23FFCP PHASE2:Hg19::chr7:120383546..120383560,+#_ff13f51a990286586a726a44f2e602cap@chr7:120383546..120383560, +
2.62e-23FFCP PHASE1:Hg19::chr14:58045730..58045732,-#_ff13f51a990286586a726a44f2e602cap@chr14:58045730..58045732, -
2.62e-23FFCP PHASE2:Hg19::chr14:57127856..57127863,+#_ff13f51a990286586a726a44f2e602cap@chr14:57127856..57127863, +
2.62e-23FFCP PHASE2:Hg19::chr11:31093041..31093047,-#_ff13f51a990286586a726a44f2e602cap@chr11:31093041..31093047, -
2.62e-23FFCP PHASE2:Hg19::chr18:33311016..33311032,-#_ff13f51a990286586a726a44f2e602cap@chr18:33311016..33311032, -
2.62e-23FFCP PHASE1:Hg19::chr10:82723188..82723191,-#_ff13f51a990286586a726a44f2e602cap@chr10:82723188..82723191, -
2.62e-23FFCP PHASE2:Hg19::chr3:102635473..102635480,-#_ff13f51a990286586a726a44f2e602cap@chr3:102635473..102635480, -
2.62e-23FFCP PHASE2:Hg19::chr13:76563913..76563916,+#_ff13f51a990286586a726a44f2e602cap@chr13:76563913..76563916, +
2.62e-23FFCP PHASE2:Hg19::chr2:238385078..238385087,-#_ff13f51a990286586a726a44f2e602cap@chr2:238385078..238385087, -
2.62e-23FFCP PHASE1:Hg19::chr8:97961686..97961696,-#_ff13f51a990286586a726a44f2e602cap@chr8:97961686..97961696, -
2.62e-23FFCP PHASE1:Hg19::chr14:88452908..88452916,-#_ff13f51a990286586a726a44f2e602cap@chr14:88452908..88452916, -
2.62e-23FFCP PHASE1:Hg19::chr2:135120480..135120481,+#_ff13f51a990286586a726a44f2e602cap@chr2:135120480..135120481, +
2.62e-23FFCP PHASE1:Hg19::chr6:44681761..44681769,-#_ff13f51a990286586a726a44f2e602cap@chr6:44681761..44681769, -
2.62e-23FFCP PHASE1:Hg19::chr12:40426483..40426524,-#_ff13f51a990286586a726a44f2e602cap@chr12:40426483..40426524, -
2.62e-23FFCP PHASE1:Hg19::chr6:125547084..125547089,+#_ff13f51a990286586a726a44f2e602cap@chr6:125547084..125547089, +
2.62e-23FFCP PHASE2:Hg19::chr8:98015654..98015697,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015654..98015697, -
2.62e-23FFCP PHASE2:Hg19::chr14:89802926..89802934,-#_ff13f51a990286586a726a44f2e602cap@chr14:89802926..89802934, -
2.62e-23FFCP PHASE2:Hg19::chr14:36966895..36966899,-#_ff13f51a990286586a726a44f2e602cap@chr14:36966895..36966899, -
2.62e-23FFCP PHASE1:Hg19::chr1:219599419..219599426,-#_ff13f51a990286586a726a44f2e602cap@chr1:219599419..219599426, -
2.62e-23FFCP PHASE1:Hg19::chr10:129710296..129710320,-#_ff13f51a990286586a726a44f2e602cap@chr10:129710296..129710320, -
2.62e-23FFCP PHASE2:Hg19::chr2:51255348..51255351,+#_ff13f51a990286586a726a44f2e602cap@chr2:51255348..51255351, +
2.62e-23FFCP PHASE2:Hg19::chr7:68735214..68735224,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735214..68735224, +
2.62e-23FFCP PHASE1:Hg19::chr2:192805413..192805418,+#_ff13f51a990286586a726a44f2e602cap@chr2:192805413..192805418, +
2.62e-23FFCP PHASE1:Hg19::chr8:38459926..38459928,+#_ff13f51a990286586a726a44f2e602cap@chr8:38459926..38459928, +
2.62e-23FFCP PHASE2:Hg19::chr18:10085799..10085809,+#_ff13f51a990286586a726a44f2e602cap@chr18:10085799..10085809, +
2.62e-23FFCP PHASE1:Hg19::chr5:28571958..28571968,-#_ff13f51a990286586a726a44f2e602cap@chr5:28571958..28571968, -
2.62e-23FFCP PHASE2:Hg19::chr8:54464033..54464036,-#_ff13f51a990286586a726a44f2e602cap@chr8:54464033..54464036, -
2.62e-23FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_ff13f51a990286586a726a44f2e602cap13@DNMBP
2.62e-23FFCP PHASE1:Hg19::chr2:97626580..97626585,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626580..97626585, -
2.62e-23FFCP PHASE2:Hg19::chr2:97626550..97626562,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626550..97626562, -
2.62e-23FFCP PHASE1:Hg19::chr7:151169194..151169198,-#_ff13f51a990286586a726a44f2e602cap17@RHEB
2.62e-23FFCP PHASE2:Hg19::chr7:95776285..95776292,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776285..95776292, -