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{{f5samples
{{f5samples
|DRA_sample_Accession=chicken_CAGE@SAMD00053745
|DRA_sample_Accession_Zoo=chicken_sRNA@SAMD00053745
|accession_numbers=chicken_CAGE;DRX057267;DRR063026;DRZ007521;DRZ00755375;DRZ014422!chicken_sRNA;DRX163585;DRR172974;DRZ014421!chicken_sRNA;DRX163586;DRR172975;DRZ014422
|accession_numbers_Zoo=chicken_sRNA;DRX163585;DRR172974;DRZ014421!chicken_sRNA;DRX163586;DRR172975;DRZ014422
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000032,FF:0000001,FF:0000004,FF:0000649
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cellprecursor=
|fonse_cellprecursor_closure=
|fonse_developsfrom=
|fonse_developsfrom_closure=
|fonse_disease=
|fonse_disease_closure=
|fonse_isa=
|fonse_isa_closure=
|fonse_location=
|fonse_location_closure=
|fonse_organ=
|fonse_organ_closure=
|fonse_organismsubdivision=
|fonse_organismsubdivision_closure=
|fonse_sampletype=
|fonse_sampletype_closure=
|fonse_stage=
|fonse_stage_closure=
|fonse_system=
|fonse_system_closure=
|fonse_taxon=
|fonse_taxon_closure=
|fonse_treatment=
|fonse_treatment_closure=
|has_quality=
|id=FF:10004-101A9
|id=FF:10004-101A9
|name=Universal RNA - Chicken Day 10 Embryo RNA, donor1
|is_a=FF:0000004;;FF:0000032;;FF:0000649;;UBERON:0000922
|sample_id=10004
|is_obsolete=
|rna_tube_id=101A9
|library_id=CNhs10485
|name=chicken embryo whole body, day10 (HH37)
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10485,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10006,,,
|rna_box=101
|rna_box=101
|rna_catalog_number=NA
|rna_concentration=4.4
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=NA
|rna_od260/230=1.686666667
|rna_od260/280=1.943333333
|rna_position=A9
|rna_position=A9
|rna_rin=9.9
|rna_sample_type=total RNA
|rna_tube_id=101A9
|rna_weight_ug=800
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Guojun Sheng (RIKEN CDB)
|sample_company=NA
|sample_company=NA
|rna_lot_number=NA
|sample_description=
|rna_catalog_number=NA
|sample_species=Chicken (Gallus gallus)
|sample_strain=
|sample_dev_stage=10 days embryo
|sample_dev_stage=10 days embryo
|sample_tissue=whole body
|sample_disease=normal
|sample_donor(cell lot)=1.00000
|sample_donor(cell lot)=1
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|sample_ethnicity=
|rna_rin=9.90000
|rna_od260/230=1.68667
|rna_od260/280=1.94333
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Guojun Sheng (RIKEN CDB)
|sample_experimental_condition=
|sample_experimental_condition=
|sample_disease=normal
|sample_id=10004
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=800.00000
|rna_concentration=
|sample_note=
|sample_note=
|profile_hcage=CNhs10485,LSID656,release008,COMPLETED
|sample_sex=unknown
|profile_cagescan=,,,
|sample_species=Gallus gallus
|profile_srnaseq=SRhi10006,,,
|sample_strain=
|profile_rnaseq=,,,
|sample_tissue=whole body
|ancestors_in_cell_lineage_facet=
|top_motifs=
|ancestors_in_anatomy_facet=
|xref=
|ancestors_in_disease_facet=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10004-101A9;search_select_hide=table117:FF:10004-101A9
|sample_description=
|zoo_library_id=SRhi10006.GGCTAC!SRhi10007.GGTAGC
 
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:chicken embryo whole body, day10 (HH37)
Species:Gallus gallus
Library ID:CNhs10485
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stage10 days embryo
sexunknown
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationGuojun Sheng (RIKEN CDB)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053745
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10485 chicken_CAGE DRX057267 DRR063026
chicken_sRNA DRX163585 DRR172974
chicken_sRNA DRX163586 DRR172975
Accession ID

Library idBAMCTSS
CNhs10485 DRZ007521 DRZ00755375
DRZ014421
DRZ014422
Accession ID

Library idBAMCTSS
CNhs10485 DRZ014422

sRNA Accession numbers
MethodSample accession id
chicken_sRNA  SAMD00053745
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GGCTAC chicken_sRNA DRX163585 DRR172974
SRhi10007.GGTAGC chicken_sRNA DRX163586 DRR172975
Accession ID

Library idBAMCTSS
SRhi10006.GGCTAC DRZ014421
SRhi10007.GGTAGC DRZ014422



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000004 (tissue sample)
0000649 (10 days sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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