FF:10011-101C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005257 | ||
|accession_numbers=CAGE;DRX008622;DRR009494;DRZ000919;DRZ002304;DRZ012269;DRZ013654 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001255,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0002323,UBERON:0000489,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0001556,UBERON:0001008 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010011 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10011-101C2 | |id=FF:10011-101C2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010011 | ||
|is_obsolete= | |||
|library_id=CNhs10616 | |||
|library_id_phase_based=2:CNhs10616 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10011 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10011 | |||
|name=bladder, adult, pool1 | |name=bladder, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10616,LSID656,release008,COMPLETED | |profile_hcage=CNhs10616,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -2 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -2 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.44323509817129e-224!GO:0005737;cytoplasm;3.01054810241508e-163!GO:0043226;organelle;2.34432373959086e-136!GO:0043229;intracellular organelle;5.71410615431079e-136!GO:0043227;membrane-bound organelle;1.929236126277e-127!GO:0043231;intracellular membrane-bound organelle;1.929236126277e-127!GO:0005515;protein binding;9.19701438683601e-111!GO:0044444;cytoplasmic part;1.76181479730543e-98!GO:0044422;organelle part;1.59416389300533e-70!GO:0044446;intracellular organelle part;2.76796373424952e-69!GO:0032991;macromolecular complex;2.41632173429231e-59!GO:0044238;primary metabolic process;2.90517373259384e-55!GO:0043170;macromolecule metabolic process;4.72530861318163e-55!GO:0044237;cellular metabolic process;5.51231820784237e-53!GO:0005634;nucleus;1.05315627857556e-50!GO:0030529;ribonucleoprotein complex;7.67284443751136e-49!GO:0003723;RNA binding;1.81984397907645e-45!GO:0016043;cellular component organization and biogenesis;2.87529413652841e-44!GO:0043233;organelle lumen;8.75523728513945e-42!GO:0031974;membrane-enclosed lumen;8.75523728513945e-42!GO:0044428;nuclear part;6.11579531555642e-40!GO:0033036;macromolecule localization;1.96144341863722e-37!GO:0015031;protein transport;6.12770951978345e-37!GO:0019538;protein metabolic process;2.48992985658594e-36!GO:0045184;establishment of protein localization;1.23478445523687e-35!GO:0008104;protein localization;5.44672411923203e-35!GO:0005739;mitochondrion;3.30793226785969e-34!GO:0010467;gene expression;3.04323164760993e-33!GO:0044260;cellular macromolecule metabolic process;2.15478918028617e-31!GO:0031090;organelle membrane;2.31811841978401e-31!GO:0043234;protein complex;1.09652498849281e-30!GO:0043283;biopolymer metabolic process;3.97752618155152e-30!GO:0044267;cellular protein metabolic process;4.49882321713138e-30!GO:0006412;translation;1.44126362523091e-29!GO:0005829;cytosol;2.31686323585952e-29!GO:0016071;mRNA metabolic process;6.79385816224939e-29!GO:0046907;intracellular transport;1.42723811468887e-27!GO:0005840;ribosome;1.77791462407376e-27!GO:0006396;RNA processing;9.46301513896078e-27!GO:0008380;RNA splicing;1.04658034420317e-26!GO:0031967;organelle envelope;2.08871551083572e-25!GO:0044429;mitochondrial part;2.88201828193097e-25!GO:0031975;envelope;3.40136104903469e-25!GO:0031981;nuclear lumen;6.54212059069825e-25!GO:0006886;intracellular protein transport;8.72948529369947e-25!GO:0008134;transcription factor binding;1.39733863687415e-24!GO:0003735;structural constituent of ribosome;6.89437168694242e-24!GO:0006397;mRNA processing;7.4738049256577e-24!GO:0065003;macromolecular complex assembly;1.13172502238318e-23!GO:0022607;cellular component assembly;9.50417146226187e-23!GO:0033279;ribosomal subunit;2.97653699873032e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.8776754822433e-22!GO:0009059;macromolecule biosynthetic process;1.60036433574036e-19!GO:0044249;cellular biosynthetic process;3.06768777419968e-18!GO:0050794;regulation of cellular process;3.37871500883217e-18!GO:0005681;spliceosome;3.63469282112139e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.19166194522436e-18!GO:0050789;regulation of biological process;7.4973514427755e-18!GO:0051641;cellular localization;9.35538364664165e-18!GO:0051649;establishment of cellular localization;9.49154971236767e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.39105513328212e-17!GO:0009058;biosynthetic process;1.94722794848596e-17!GO:0005740;mitochondrial envelope;2.06173519115301e-17!GO:0016070;RNA metabolic process;2.92316594897045e-17!GO:0048770;pigment granule;3.85496952109111e-17!GO:0042470;melanosome;3.85496952109111e-17!GO:0031966;mitochondrial membrane;9.05119699201131e-17!GO:0048523;negative regulation of cellular process;1.55967307432969e-16!GO:0044445;cytosolic part;2.88543948552811e-16!GO:0005654;nucleoplasm;4.0702028805626e-16!GO:0006996;organelle organization and biogenesis;4.09628796624521e-16!GO:0005783;endoplasmic reticulum;5.33350445606028e-16!GO:0016192;vesicle-mediated transport;5.61802800517605e-16!GO:0003712;transcription cofactor activity;7.99110802805472e-16!GO:0019866;organelle inner membrane;3.13381137631863e-15!GO:0006119;oxidative phosphorylation;4.10040582667762e-15!GO:0043228;non-membrane-bound organelle;5.13634270217976e-15!GO:0043232;intracellular non-membrane-bound organelle;5.13634270217976e-15!GO:0022618;protein-RNA complex assembly;7.8279239950196e-15!GO:0048519;negative regulation of biological process;7.91200429239251e-15!GO:0006366;transcription from RNA polymerase II promoter;2.00020204842918e-14!GO:0044451;nucleoplasm part;2.13793050790085e-14!GO:0005743;mitochondrial inner membrane;3.09157309587284e-14!GO:0003676;nucleic acid binding;4.20298883960785e-14!GO:0012501;programmed cell death;6.33626193530537e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16590368463574e-13!GO:0065007;biological regulation;1.22716615743828e-13!GO:0006915;apoptosis;1.55959837050591e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.87199096949364e-13!GO:0006457;protein folding;1.87374370066146e-13!GO:0000166;nucleotide binding;2.04367598389195e-13!GO:0019941;modification-dependent protein catabolic process;2.1833207324598e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.1833207324598e-13!GO:0012505;endomembrane system;3.57828391914675e-13!GO:0044257;cellular protein catabolic process;3.9375284345851e-13!GO:0008219;cell death;4.56399940158099e-13!GO:0016265;death;4.56399940158099e-13!GO:0005794;Golgi apparatus;5.01322349419616e-13!GO:0006605;protein targeting;1.03861153281199e-12!GO:0044265;cellular macromolecule catabolic process;1.07240547243447e-12!GO:0015935;small ribosomal subunit;1.2459863521745e-12!GO:0048193;Golgi vesicle transport;1.28241746943577e-12!GO:0006512;ubiquitin cycle;1.98142700482263e-12!GO:0044455;mitochondrial membrane part;2.66033972536579e-12!GO:0005746;mitochondrial respiratory chain;2.66686556736245e-12!GO:0016564;transcription repressor activity;2.66686556736245e-12!GO:0008135;translation factor activity, nucleic acid binding;3.38059620828441e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.92100135543107e-12!GO:0043285;biopolymer catabolic process;1.24792618295412e-11!GO:0016874;ligase activity;2.60091069026918e-11!GO:0017111;nucleoside-triphosphatase activity;6.26863768994348e-11!GO:0016462;pyrophosphatase activity;7.41873839828139e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.5478531441256e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.03147471708296e-10!GO:0003954;NADH dehydrogenase activity;1.03147471708296e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.03147471708296e-10!GO:0030163;protein catabolic process;1.12910746432301e-10!GO:0015934;large ribosomal subunit;1.26556047914825e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;1.3634822196199e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.47119973282928e-10!GO:0031980;mitochondrial lumen;1.54393275294826e-10!GO:0005759;mitochondrial matrix;1.54393275294826e-10!GO:0008092;cytoskeletal protein binding;2.29702737828927e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.9719907590322e-10!GO:0006913;nucleocytoplasmic transport;3.14492271341824e-10!GO:0016604;nuclear body;4.13885774327493e-10!GO:0043412;biopolymer modification;5.52422104833325e-10!GO:0051082;unfolded protein binding;5.75329551564871e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.28769483613682e-10!GO:0003743;translation initiation factor activity;6.28769483613682e-10!GO:0043687;post-translational protein modification;7.20424888216646e-10!GO:0051169;nuclear transport;7.60763343441731e-10!GO:0006461;protein complex assembly;9.07852577604446e-10!GO:0031324;negative regulation of cellular metabolic process;9.08373517115777e-10!GO:0006446;regulation of translational initiation;1.31097742353807e-09!GO:0009057;macromolecule catabolic process;1.31846990990633e-09!GO:0006413;translational initiation;1.31846990990633e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.72850198934836e-09!GO:0006464;protein modification process;1.76880161354499e-09!GO:0044432;endoplasmic reticulum part;1.89826064293081e-09!GO:0044248;cellular catabolic process;2.02891925981398e-09!GO:0005730;nucleolus;2.3428217064064e-09!GO:0030029;actin filament-based process;2.68292604498933e-09!GO:0016607;nuclear speck;3.19385832953204e-09!GO:0003714;transcription corepressor activity;3.2853798519221e-09!GO:0009892;negative regulation of metabolic process;3.5681939521461e-09!GO:0016481;negative regulation of transcription;3.5681939521461e-09!GO:0051246;regulation of protein metabolic process;3.85420552334062e-09!GO:0008565;protein transporter activity;4.0355041466177e-09!GO:0031982;vesicle;4.54613120461892e-09!GO:0042775;organelle ATP synthesis coupled electron transport;4.65632518862879e-09!GO:0042773;ATP synthesis coupled electron transport;4.65632518862879e-09!GO:0030964;NADH dehydrogenase complex (quinone);5.14441880056457e-09!GO:0045271;respiratory chain complex I;5.14441880056457e-09!GO:0005747;mitochondrial respiratory chain complex I;5.14441880056457e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.19170611004228e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;6.49754708496071e-09!GO:0000375;RNA splicing, via transesterification reactions;6.49754708496071e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.49754708496071e-09!GO:0032553;ribonucleotide binding;6.99954583213835e-09!GO:0032555;purine ribonucleotide binding;6.99954583213835e-09!GO:0009055;electron carrier activity;7.70875404670234e-09!GO:0017076;purine nucleotide binding;7.9943115221394e-09!GO:0019222;regulation of metabolic process;8.05638854489906e-09!GO:0031988;membrane-bound vesicle;8.21453412259594e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.97519995747872e-09!GO:0005635;nuclear envelope;8.97519995747872e-09!GO:0031410;cytoplasmic vesicle;1.20197615628955e-08!GO:0031252;leading edge;1.21539120718798e-08!GO:0003924;GTPase activity;1.41284490432814e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.84123479385855e-08!GO:0005793;ER-Golgi intermediate compartment;2.76395844421028e-08!GO:0017038;protein import;3.43690571560827e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.76538572123391e-08!GO:0003713;transcription coactivator activity;4.90222214094356e-08!GO:0005525;GTP binding;5.33334247009245e-08!GO:0048522;positive regulation of cellular process;5.44138322357628e-08!GO:0019899;enzyme binding;5.96395049183614e-08!GO:0007264;small GTPase mediated signal transduction;6.42690841137383e-08!GO:0016563;transcription activator activity;8.22798769561713e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.79223360196192e-08!GO:0008639;small protein conjugating enzyme activity;1.07075023134793e-07!GO:0005768;endosome;1.53438673378226e-07!GO:0042981;regulation of apoptosis;1.62255424825553e-07!GO:0006793;phosphorus metabolic process;1.72517263621986e-07!GO:0006796;phosphate metabolic process;1.72517263621986e-07!GO:0043067;regulation of programmed cell death;1.76566217547107e-07!GO:0004842;ubiquitin-protein ligase activity;1.82426456964971e-07!GO:0019787;small conjugating protein ligase activity;2.03122607459769e-07!GO:0031965;nuclear membrane;2.05636099952216e-07!GO:0005761;mitochondrial ribosome;2.10726180846939e-07!GO:0000313;organellar ribosome;2.10726180846939e-07!GO:0008361;regulation of cell size;3.44022575631939e-07!GO:0048518;positive regulation of biological process;3.9746912882385e-07!GO:0032561;guanyl ribonucleotide binding;4.34982411592724e-07!GO:0019001;guanyl nucleotide binding;4.34982411592724e-07!GO:0016049;cell growth;4.9512095995316e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.45972836078993e-07!GO:0006606;protein import into nucleus;6.22063685761222e-07!GO:0051170;nuclear import;6.50653189408293e-07!GO:0045333;cellular respiration;6.61422581033901e-07!GO:0009060;aerobic respiration;7.85530449104697e-07!GO:0045892;negative regulation of transcription, DNA-dependent;8.10350210783683e-07!GO:0003779;actin binding;8.34125024130714e-07!GO:0051186;cofactor metabolic process;1.07924902923875e-06!GO:0007243;protein kinase cascade;1.12466807473255e-06!GO:0016310;phosphorylation;1.66734802766533e-06!GO:0043069;negative regulation of programmed cell death;1.6743181459439e-06!GO:0016044;membrane organization and biogenesis;2.05029053355726e-06!GO:0051789;response to protein stimulus;2.16490844970648e-06!GO:0006986;response to unfolded protein;2.16490844970648e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.69757322998878e-06!GO:0006950;response to stress;2.81460696800556e-06!GO:0043066;negative regulation of apoptosis;3.04738424823159e-06!GO:0006259;DNA metabolic process;3.12137355462253e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.139965051125e-06!GO:0005789;endoplasmic reticulum membrane;3.51701074812866e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.98771925337259e-06!GO:0001558;regulation of cell growth;4.02919911866683e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.47121109767009e-06!GO:0016881;acid-amino acid ligase activity;6.03155200777215e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.18253666321615e-06!GO:0048471;perinuclear region of cytoplasm;6.61380967404828e-06!GO:0048475;coated membrane;6.95797730879526e-06!GO:0030117;membrane coat;6.95797730879526e-06!GO:0045786;negative regulation of progression through cell cycle;7.8848902393463e-06!GO:0006099;tricarboxylic acid cycle;8.19295543967441e-06!GO:0046356;acetyl-CoA catabolic process;8.19295543967441e-06!GO:0031323;regulation of cellular metabolic process;1.07286348122586e-05!GO:0005770;late endosome;1.29950230385212e-05!GO:0006916;anti-apoptosis;1.33158959454851e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.46301705067448e-05!GO:0006732;coenzyme metabolic process;1.54343927899843e-05!GO:0007242;intracellular signaling cascade;1.58536840175042e-05!GO:0030120;vesicle coat;1.63742893110939e-05!GO:0030662;coated vesicle membrane;1.63742893110939e-05!GO:0019829;cation-transporting ATPase activity;1.67132691190864e-05!GO:0015986;ATP synthesis coupled proton transport;1.70071055280884e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70071055280884e-05!GO:0042802;identical protein binding;1.78836258183493e-05!GO:0006693;prostaglandin metabolic process;1.83552581586051e-05!GO:0006692;prostanoid metabolic process;1.83552581586051e-05!GO:0009056;catabolic process;2.471092941897e-05!GO:0009109;coenzyme catabolic process;2.64425727230668e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.64425727230668e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.76061319109575e-05!GO:0044453;nuclear membrane part;2.81977604487776e-05!GO:0005773;vacuole;2.95183752094364e-05!GO:0007010;cytoskeleton organization and biogenesis;3.69919117252708e-05!GO:0051187;cofactor catabolic process;4.20995981288978e-05!GO:0000245;spliceosome assembly;4.35305968260696e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.87862796986429e-05!GO:0044440;endosomal part;4.87862796986429e-05!GO:0010008;endosome membrane;4.87862796986429e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.9254458782225e-05!GO:0006084;acetyl-CoA metabolic process;4.9254458782225e-05!GO:0043566;structure-specific DNA binding;4.94620555075977e-05!GO:0030133;transport vesicle;5.0741119644649e-05!GO:0006613;cotranslational protein targeting to membrane;5.13532469338174e-05!GO:0006350;transcription;5.54629763407755e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.57761101687083e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.75726330634291e-05!GO:0005791;rough endoplasmic reticulum;7.85083284960415e-05!GO:0010468;regulation of gene expression;7.91393355965089e-05!GO:0005798;Golgi-associated vesicle;8.11418466625817e-05!GO:0005788;endoplasmic reticulum lumen;8.15539890799828e-05!GO:0016197;endosome transport;8.23214105323649e-05!GO:0051427;hormone receptor binding;8.3622314981113e-05!GO:0016469;proton-transporting two-sector ATPase complex;9.30305292476644e-05!GO:0042254;ribosome biogenesis and assembly;9.48746400588396e-05!GO:0044431;Golgi apparatus part;9.59515459361634e-05!GO:0045259;proton-transporting ATP synthase complex;0.000108318482907895!GO:0006091;generation of precursor metabolites and energy;0.000108553566604063!GO:0003702;RNA polymerase II transcription factor activity;0.000112248836353948!GO:0032446;protein modification by small protein conjugation;0.00011252696755154!GO:0045941;positive regulation of transcription;0.000119952022020005!GO:0030027;lamellipodium;0.000122544714872942!GO:0032559;adenyl ribonucleotide binding;0.0001279574734555!GO:0005524;ATP binding;0.000130414865789118!GO:0001726;ruffle;0.000133755099272978!GO:0005643;nuclear pore;0.000136636055410483!GO:0006323;DNA packaging;0.000140059918577671!GO:0030554;adenyl nucleotide binding;0.000146808043784303!GO:0048468;cell development;0.00016235943081866!GO:0035257;nuclear hormone receptor binding;0.000163623301934598!GO:0016567;protein ubiquitination;0.000164706196000184!GO:0000323;lytic vacuole;0.000166889124549393!GO:0005764;lysosome;0.000166889124549393!GO:0050657;nucleic acid transport;0.000178355868463624!GO:0051236;establishment of RNA localization;0.000178355868463624!GO:0050658;RNA transport;0.000178355868463624!GO:0006403;RNA localization;0.000181989354562454!GO:0005839;proteasome core complex (sensu Eukaryota);0.000187821287435049!GO:0005741;mitochondrial outer membrane;0.000192943894887692!GO:0033673;negative regulation of kinase activity;0.00020964674114048!GO:0006469;negative regulation of protein kinase activity;0.00020964674114048!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000213454641101913!GO:0016568;chromatin modification;0.000244880133187161!GO:0006163;purine nucleotide metabolic process;0.000256310411589416!GO:0008286;insulin receptor signaling pathway;0.000265099216951905!GO:0008026;ATP-dependent helicase activity;0.000280270365073738!GO:0006754;ATP biosynthetic process;0.000296205416368856!GO:0006753;nucleoside phosphate metabolic process;0.000296205416368856!GO:0040008;regulation of growth;0.000297334107238225!GO:0016887;ATPase activity;0.000298751035629133!GO:0030532;small nuclear ribonucleoprotein complex;0.000337079231705176!GO:0006897;endocytosis;0.000362359836045941!GO:0010324;membrane invagination;0.000362359836045941!GO:0009150;purine ribonucleotide metabolic process;0.000363757958310129!GO:0009142;nucleoside triphosphate biosynthetic process;0.00036522383271008!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.00036522383271008!GO:0009259;ribonucleotide metabolic process;0.00036522383271008!GO:0007265;Ras protein signal transduction;0.000376121227231939!GO:0009199;ribonucleoside triphosphate metabolic process;0.000392936977325164!GO:0031968;organelle outer membrane;0.000420871711460077!GO:0046034;ATP metabolic process;0.000421094665561281!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000443688223686792!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000443688223686792!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000443688223686792!GO:0000151;ubiquitin ligase complex;0.000453560558603304!GO:0003724;RNA helicase activity;0.000464860297816848!GO:0009141;nucleoside triphosphate metabolic process;0.000464860297816848!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000470641178982069!GO:0009144;purine nucleoside triphosphate metabolic process;0.000470641178982069!GO:0009966;regulation of signal transduction;0.000470641178982069!GO:0004386;helicase activity;0.00049910010839963!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000513516648690512!GO:0006164;purine nucleotide biosynthetic process;0.000514531116334385!GO:0051348;negative regulation of transferase activity;0.000515375756812543!GO:0016491;oxidoreductase activity;0.000588383452435044!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000599616628066638!GO:0003697;single-stranded DNA binding;0.000600518699103372!GO:0019867;outer membrane;0.000603499509771179!GO:0065002;intracellular protein transport across a membrane;0.000605944477708789!GO:0042623;ATPase activity, coupled;0.000634341392460826!GO:0051128;regulation of cellular component organization and biogenesis;0.000646939951795491!GO:0065009;regulation of a molecular function;0.000655700287346855!GO:0005769;early endosome;0.00068564807225129!GO:0006351;transcription, DNA-dependent;0.000692290446882766!GO:0032774;RNA biosynthetic process;0.000692290446882766!GO:0030867;rough endoplasmic reticulum membrane;0.000702471893521627!GO:0009152;purine ribonucleotide biosynthetic process;0.000719070273597588!GO:0051726;regulation of cell cycle;0.000827892265925513!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000834170207720964!GO:0004812;aminoacyl-tRNA ligase activity;0.000834170207720964!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000834170207720964!GO:0000074;regulation of progression through cell cycle;0.000845670841375216!GO:0005912;adherens junction;0.000883416031527751!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000927846443514634!GO:0006979;response to oxidative stress;0.000951195297525996!GO:0035258;steroid hormone receptor binding;0.000951195297525996!GO:0009260;ribonucleotide biosynthetic process;0.000964798477059257!GO:0005667;transcription factor complex;0.00104986405565756!GO:0007049;cell cycle;0.00107591188549478!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00109458280912092!GO:0004298;threonine endopeptidase activity;0.00110619713592572!GO:0008154;actin polymerization and/or depolymerization;0.00112269793326565!GO:0046930;pore complex;0.00119898931503571!GO:0051270;regulation of cell motility;0.00122178519813935!GO:0001666;response to hypoxia;0.00124653221723137!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00128686435470524!GO:0006402;mRNA catabolic process;0.00131385123059027!GO:0015629;actin cytoskeleton;0.00136257324129858!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00138383101588603!GO:0030100;regulation of endocytosis;0.00144348715151903!GO:0043038;amino acid activation;0.00144348715151903!GO:0006418;tRNA aminoacylation for protein translation;0.00144348715151903!GO:0043039;tRNA aminoacylation;0.00144348715151903!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00147641655393877!GO:0019843;rRNA binding;0.00151492065066517!GO:0030518;steroid hormone receptor signaling pathway;0.00152247241404228!GO:0043021;ribonucleoprotein binding;0.00160639091209955!GO:0045449;regulation of transcription;0.00166608520304861!GO:0003690;double-stranded DNA binding;0.00182939626166541!GO:0045792;negative regulation of cell size;0.00191717385447206!GO:0051287;NAD binding;0.00201919537982261!GO:0030308;negative regulation of cell growth;0.00214213676705575!GO:0016859;cis-trans isomerase activity;0.00218117725710356!GO:0001516;prostaglandin biosynthetic process;0.00218117725710356!GO:0046457;prostanoid biosynthetic process;0.00218117725710356!GO:0051028;mRNA transport;0.00228131313888927!GO:0006607;NLS-bearing substrate import into nucleus;0.00242727291188622!GO:0006333;chromatin assembly or disassembly;0.0025587821523597!GO:0005885;Arp2/3 protein complex;0.00256260470745192!GO:0006892;post-Golgi vesicle-mediated transport;0.00258795819127305!GO:0006612;protein targeting to membrane;0.00273351408007616!GO:0019904;protein domain specific binding;0.00291330869233162!GO:0030041;actin filament polymerization;0.00291330869233162!GO:0005083;small GTPase regulator activity;0.0029452735896919!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00301140022537786!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00301140022537786!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00301140022537786!GO:0009893;positive regulation of metabolic process;0.00305058298845049!GO:0031072;heat shock protein binding;0.00318667528547117!GO:0008287;protein serine/threonine phosphatase complex;0.00342375306017007!GO:0000139;Golgi membrane;0.00342958340398409!GO:0001944;vasculature development;0.00346056045138024!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00391039707681706!GO:0007005;mitochondrion organization and biogenesis;0.00405021007362776!GO:0033116;ER-Golgi intermediate compartment membrane;0.00406504317901998!GO:0043623;cellular protein complex assembly;0.0041375087607095!GO:0006891;intra-Golgi vesicle-mediated transport;0.0042535274745033!GO:0051920;peroxiredoxin activity;0.00425419538713518!GO:0051087;chaperone binding;0.00451779283943705!GO:0000902;cell morphogenesis;0.00456748259624301!GO:0032989;cellular structure morphogenesis;0.00456748259624301!GO:0043488;regulation of mRNA stability;0.00460334913516669!GO:0043487;regulation of RNA stability;0.00460334913516669!GO:0001568;blood vessel development;0.00483255733170905!GO:0006364;rRNA processing;0.00502460655138756!GO:0040012;regulation of locomotion;0.00507279013283102!GO:0051188;cofactor biosynthetic process;0.00512961110469586!GO:0008283;cell proliferation;0.00515328713920652!GO:0005048;signal sequence binding;0.00516019885447415!GO:0008250;oligosaccharyl transferase complex;0.00517516794374244!GO:0040011;locomotion;0.00517516794374244!GO:0051276;chromosome organization and biogenesis;0.00517752881265669!GO:0008186;RNA-dependent ATPase activity;0.00522782578168852!GO:0016072;rRNA metabolic process;0.00523150164871217!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00532492322624607!GO:0017166;vinculin binding;0.00535096283038391!GO:0006355;regulation of transcription, DNA-dependent;0.00554990832996831!GO:0051674;localization of cell;0.00554990832996831!GO:0006928;cell motility;0.00554990832996831!GO:0045045;secretory pathway;0.00568765472539473!GO:0008654;phospholipid biosynthetic process;0.00583596027865263!GO:0045098;type III intermediate filament;0.0058682903346778!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00587965105038196!GO:0006401;RNA catabolic process;0.00593102511305345!GO:0005905;coated pit;0.00594282941542996!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00594282941542996!GO:0001725;stress fiber;0.00602029473893851!GO:0032432;actin filament bundle;0.00602029473893851!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00620232269439204!GO:0007167;enzyme linked receptor protein signaling pathway;0.00623719610970252!GO:0043065;positive regulation of apoptosis;0.00633517917548326!GO:0048500;signal recognition particle;0.00641771574324914!GO:0009967;positive regulation of signal transduction;0.00649468524623135!GO:0005100;Rho GTPase activator activity;0.00686177137610807!GO:0046983;protein dimerization activity;0.00689815916284546!GO:0030118;clathrin coat;0.00698418984959296!GO:0003729;mRNA binding;0.00716396328940705!GO:0030127;COPII vesicle coat;0.00733435005800995!GO:0012507;ER to Golgi transport vesicle membrane;0.00733435005800995!GO:0008139;nuclear localization sequence binding;0.00739519930674606!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00741253666959269!GO:0031589;cell-substrate adhesion;0.00741253666959269!GO:0030241;muscle thick filament assembly;0.00741253666959269!GO:0031034;myosin filament assembly;0.00741253666959269!GO:0031033;myosin filament assembly or disassembly;0.00741253666959269!GO:0048739;cardiac muscle fiber development;0.00741253666959269!GO:0030522;intracellular receptor-mediated signaling pathway;0.00754085527412603!GO:0030521;androgen receptor signaling pathway;0.00766416221584213!GO:0030134;ER to Golgi transport vesicle;0.00789013086106127!GO:0030695;GTPase regulator activity;0.00789013086106127!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00803612720895441!GO:0016584;nucleosome positioning;0.00805966543808901!GO:0043068;positive regulation of programmed cell death;0.00818508917088566!GO:0065004;protein-DNA complex assembly;0.00828461877607212!GO:0051252;regulation of RNA metabolic process;0.00882031309317094!GO:0005762;mitochondrial large ribosomal subunit;0.00968668088994923!GO:0000315;organellar large ribosomal subunit;0.00968668088994923!GO:0044420;extracellular matrix part;0.00990563223491982!GO:0004576;oligosaccharyl transferase activity;0.00991742092317717!GO:0051168;nuclear export;0.010192301326325!GO:0006417;regulation of translation;0.0102054883919858!GO:0043086;negative regulation of catalytic activity;0.0104605791077586!GO:0031902;late endosome membrane;0.0110442998360555!GO:0043034;costamere;0.0110593155818743!GO:0030663;COPI coated vesicle membrane;0.0110758517812013!GO:0030126;COPI vesicle coat;0.0110758517812013!GO:0045454;cell redox homeostasis;0.0124211372953349!GO:0009108;coenzyme biosynthetic process;0.0126678983378967!GO:0007160;cell-matrix adhesion;0.0126678983378967!GO:0007050;cell cycle arrest;0.0131016423832335!GO:0004004;ATP-dependent RNA helicase activity;0.013155852346012!GO:0031901;early endosome membrane;0.0131855340426332!GO:0008047;enzyme activator activity;0.0132332619447101!GO:0000314;organellar small ribosomal subunit;0.0132804456379904!GO:0005763;mitochondrial small ribosomal subunit;0.0132804456379904!GO:0009719;response to endogenous stimulus;0.0133161876739742!GO:0032940;secretion by cell;0.0135159834136648!GO:0043407;negative regulation of MAP kinase activity;0.0136467365946815!GO:0006974;response to DNA damage stimulus;0.013788842523673!GO:0005869;dynactin complex;0.0144308224103518!GO:0007517;muscle development;0.0144482374050699!GO:0007266;Rho protein signal transduction;0.0144597821200968!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.01460464633109!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0147153716230218!GO:0045047;protein targeting to ER;0.0147153716230218!GO:0045926;negative regulation of growth;0.0151793884454611!GO:0030658;transport vesicle membrane;0.0158195041701616!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0160284064733877!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0162484779484661!GO:0005813;centrosome;0.0162654809835037!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0163265279281235!GO:0050811;GABA receptor binding;0.0164136925870873!GO:0060090;molecular adaptor activity;0.016845392027404!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0170175691419726!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0171319775902317!GO:0019838;growth factor binding;0.0173947427043651!GO:0008312;7S RNA binding;0.0183425050141874!GO:0006752;group transfer coenzyme metabolic process;0.0183425050141874!GO:0016363;nuclear matrix;0.0184045711275135!GO:0048487;beta-tubulin binding;0.0192527997490381!GO:0035035;histone acetyltransferase binding;0.0192732781775285!GO:0051101;regulation of DNA binding;0.0196525850844023!GO:0008601;protein phosphatase type 2A regulator activity;0.0199176436013424!GO:0030137;COPI-coated vesicle;0.0199712870070945!GO:0022415;viral reproductive process;0.0199980184737375!GO:0043681;protein import into mitochondrion;0.0200414889351136!GO:0015631;tubulin binding;0.0202500180293771!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0205986874344195!GO:0033043;regulation of organelle organization and biogenesis;0.0205986874344195!GO:0051049;regulation of transport;0.020966926746686!GO:0012506;vesicle membrane;0.0210956546430423!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0210956546430423!GO:0015002;heme-copper terminal oxidase activity;0.0210956546430423!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0210956546430423!GO:0004129;cytochrome-c oxidase activity;0.0210956546430423!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.02111101691891!GO:0004860;protein kinase inhibitor activity;0.0217349827538826!GO:0006376;mRNA splice site selection;0.0219393255321763!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0219393255321763!GO:0005096;GTPase activator activity;0.0221282522844802!GO:0030132;clathrin coat of coated pit;0.022674629152752!GO:0050790;regulation of catalytic activity;0.0238051876419012!GO:0016853;isomerase activity;0.0240931454164609!GO:0045947;negative regulation of translational initiation;0.0242691494587981!GO:0006414;translational elongation;0.0246447384770478!GO:0030119;AP-type membrane coat adaptor complex;0.0259801732731021!GO:0005581;collagen;0.0269441093762138!GO:0048514;blood vessel morphogenesis;0.0274504727566983!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0281454442772396!GO:0000159;protein phosphatase type 2A complex;0.0285177568028947!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0285625560101716!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.029178626346699!GO:0050681;androgen receptor binding;0.0298286625156262!GO:0051235;maintenance of localization;0.0298286625156262!GO:0030334;regulation of cell migration;0.0301761893934814!GO:0018193;peptidyl-amino acid modification;0.0303101436483795!GO:0017091;AU-rich element binding;0.0305848111023768!GO:0050779;RNA destabilization;0.0305848111023768!GO:0000289;poly(A) tail shortening;0.0305848111023768!GO:0003746;translation elongation factor activity;0.0312616614299436!GO:0018196;peptidyl-asparagine modification;0.0315436044651499!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0315436044651499!GO:0031349;positive regulation of defense response;0.0315436044651499!GO:0050729;positive regulation of inflammatory response;0.0315436044651499!GO:0006984;ER-nuclear signaling pathway;0.0317080442918007!GO:0006611;protein export from nucleus;0.0320373721608426!GO:0005159;insulin-like growth factor receptor binding;0.0323338687760925!GO:0046822;regulation of nucleocytoplasmic transport;0.0324789535455337!GO:0030659;cytoplasmic vesicle membrane;0.0328562102572042!GO:0005862;muscle thin filament tropomyosin;0.0330763787497678!GO:0006399;tRNA metabolic process;0.0333224620053902!GO:0043022;ribosome binding;0.0337206036767402!GO:0031326;regulation of cellular biosynthetic process;0.0346679883043437!GO:0006650;glycerophospholipid metabolic process;0.0348298345580455!GO:0004722;protein serine/threonine phosphatase activity;0.0348429655008393!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0353634357570479!GO:0008147;structural constituent of bone;0.0357879590903846!GO:0022890;inorganic cation transmembrane transporter activity;0.0358413924489061!GO:0030131;clathrin adaptor complex;0.0365210592882069!GO:0000059;protein import into nucleus, docking;0.0365487488243362!GO:0051098;regulation of binding;0.0365612909271388!GO:0051271;negative regulation of cell motility;0.0366638613700912!GO:0006633;fatty acid biosynthetic process;0.0368296059106925!GO:0045121;lipid raft;0.0368607916169106!GO:0005938;cell cortex;0.0372416489441595!GO:0016791;phosphoric monoester hydrolase activity;0.0372821278065327!GO:0031325;positive regulation of cellular metabolic process;0.0379948608041759!GO:0009889;regulation of biosynthetic process;0.0388359146340809!GO:0005815;microtubule organizing center;0.039114318687139!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0400069347746333!GO:0008097;5S rRNA binding;0.0402099167474178!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0410068812774662!GO:0048660;regulation of smooth muscle cell proliferation;0.041136424149725!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0412575248023874!GO:0055083;monovalent inorganic anion homeostasis;0.0412575248023874!GO:0055064;chloride ion homeostasis;0.0412575248023874!GO:0030644;cellular chloride ion homeostasis;0.0412575248023874!GO:0051338;regulation of transferase activity;0.0418631961379712!GO:0051540;metal cluster binding;0.0419005698556549!GO:0051536;iron-sulfur cluster binding;0.0419005698556549!GO:0007004;telomere maintenance via telomerase;0.0420669227445017!GO:0031625;ubiquitin protein ligase binding;0.0421763148737504!GO:0001525;angiogenesis;0.042251151995552!GO:0030833;regulation of actin filament polymerization;0.0424131042027889!GO:0031529;ruffle organization and biogenesis;0.0425771564762978!GO:0030660;Golgi-associated vesicle membrane;0.0430507885094967!GO:0030055;cell-matrix junction;0.0431529218888645!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0439423877642828!GO:0019902;phosphatase binding;0.0445040453996654!GO:0000785;chromatin;0.045518723178901!GO:0014706;striated muscle development;0.0459378081576675!GO:0043284;biopolymer biosynthetic process;0.0475083589485342!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0481881641766208!GO:0008629;induction of apoptosis by intracellular signals;0.0482369901235412 | |||
|sample_id=10011 | |sample_id=10011 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bladder | |sample_tissue=bladder | ||
|top_motifs=SRF:3.46348314157;NFATC1..3:2.39625673856;TBP:2.30218334891;NR3C1:2.1196548393;TFAP4:2.09346288918;PRDM1:2.088596218;MAZ:2.05285353961;HMX1:2.04041314742;MYBL2:2.00091177373;FOX{D1,D2}:1.89487033388;FOXO1,3,4:1.85341052575;PATZ1:1.75827434688;TFAP2{A,C}:1.69163134081;TFCP2:1.6740516599;MZF1:1.65250593112;GATA4:1.59396737241;HBP1_HMGB_SSRP1_UBTF:1.5921341754;GTF2I:1.48436886183;ZNF238:1.46523602836;MEF2{A,B,C,D}:1.40649220791;TLX1..3_NFIC{dimer}:1.40263069152;GFI1B:1.40049999104;NR1H4:1.35679017556;GCM1,2:1.35417861596;SP1:1.35106142503;MYFfamily:1.35063394454;SPZ1:1.32903116706;T:1.31266174813;AR:1.26796132912;MED-1{core}:1.24249497672;TLX2:1.1858128832;IKZF1:1.17202317057;HIC1:1.14825709108;STAT2,4,6:1.14493546439;GTF2A1,2:1.13932878521;MTE{core}:1.13711535391;HAND1,2:1.10325379766;EP300:1.08233746155;TBX4,5:1.06990553171;SMAD1..7,9:1.06413826876;RREB1:1.05303626527;PAX1,9:1.0206791999;HSF1,2:1.01761101021;EGR1..3:1.00291057482;FOX{I1,J2}:0.965190066365;MTF1:0.945176953242;KLF4:0.8693948175;SOX5:0.8638453977;IKZF2:0.849901493873;TFAP2B:0.84192967259;NHLH1,2:0.820664250743;POU5F1:0.81019537308;MAFB:0.8038477445;NR6A1:0.796456611011;GLI1..3:0.786502456527;ZNF148:0.783362937691;JUN:0.766656482916;ZNF423:0.762059716611;NKX3-2:0.750438800995;FOXQ1:0.747034032212;XCPE1{core}:0.708576489963;TEAD1:0.706898985614;POU3F1..4:0.705467690079;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.696712373196;TGIF1:0.69518742018;SNAI1..3:0.641728164502;NR5A1,2:0.639849825108;CDC5L:0.603689650737;XBP1:0.588804415982;STAT1,3:0.586269356005;HES1:0.583206346753;HOX{A6,A7,B6,B7}:0.581968047362;GATA6:0.581505023918;POU2F1..3:0.574635505217;ATF6:0.57332724605;ZIC1..3:0.560702600768;PAX5:0.548901432073;ATF4:0.531671632322;UFEwm:0.524740960648;IRF7:0.51676567225;FOXM1:0.508999983312;POU6F1:0.501765843643;EBF1:0.501039587107;PAX6:0.494044271401;BREu{core}:0.467018425665;GZF1:0.445217439859;NKX2-2,8:0.418624518143;ETS1,2:0.415976288338;ZFP161:0.415638837605;FOXL1:0.404206972397;ZEB1:0.400197660367;RBPJ:0.389875259289;SPIB:0.374689857704;MYOD1:0.365268636507;RFX2..5_RFXANK_RFXAP:0.35966705841;RXRA_VDR{dimer}:0.358511020419;HNF1A:0.292881510466;DBP:0.292858774031;IRF1,2:0.292771700274;NFE2L1:0.262542791663;ATF2:0.255550223092;ESR1:0.242447278719;TP53:0.194404982268;CDX1,2,4:0.186678030913;PAX3,7:0.186226837752;VSX1,2:0.170376001637;BPTF:0.163202167786;ALX4:0.155959794821;RXR{A,B,G}:0.152171192417;AHR_ARNT_ARNT2:0.129254739989;FOXN1:0.124086749825;HMGA1,2:0.0972171630549;REST:0.0742077994132;SPI1:0.0582350690396;PBX1:0.0502849394001;SREBF1,2:0.0392214849365;ALX1:0.0370360864268;TEF:0.0346779919645;PITX1..3:0.0244052119395;SOX17:0.00293250674134;FOX{F1,F2,J1}:-0.00279213399406;ARID5B:-0.0159630499696;HNF4A_NR2F1,2:-0.0351221345371;RUNX1..3:-0.0510189077026;LMO2:-0.0545334607855;FOSL2:-0.0703542023076;FOXA2:-0.0945202315676;SOX2:-0.106574083844;NFIX:-0.121510166253;EVI1:-0.132716778133;ATF5_CREB3:-0.134950441823;HLF:-0.16930066306;FOXP3:-0.169881689622;ZBTB6:-0.181896240649;ESRRA:-0.184771092898;CEBPA,B_DDIT3:-0.189739018314;NANOG:-0.195167563816;NFIL3:-0.198344605608;ADNP_IRX_SIX_ZHX:-0.211066383768;NKX2-3_NKX2-5:-0.227101334382;CREB1:-0.233270539061;DMAP1_NCOR{1,2}_SMARC:-0.246386009282;NFE2:-0.272697750708;ZNF384:-0.304272705758;ELF1,2,4:-0.314636412951;NFKB1_REL_RELA:-0.314682168064;NKX2-1,4:-0.328286921927;HOXA9_MEIS1:-0.329900338786;NFE2L2:-0.356766895106;AIRE:-0.364376925596;HIF1A:-0.382046886401;PDX1:-0.390186993513;FOS_FOS{B,L1}_JUN{B,D}:-0.397392186794;bHLH_family:-0.416129443557;FOXP1:-0.432351344413;ZNF143:-0.49506949999;POU1F1:-0.527877821671;FOXD3:-0.541469387719;CRX:-0.554990514747;BACH2:-0.569521563466;HOX{A4,D4}:-0.625113080957;NFY{A,B,C}:-0.634655258327;LHX3,4:-0.674088782432;TFDP1:-0.724516702727;GFI1:-0.73597762777;ZBTB16:-0.73772418067;RORA:-0.74050420769;RFX1:-0.752485257591;PAX2:-0.765855799411;PRRX1,2:-0.766753479024;NKX6-1,2:-0.772908740068;TOPORS:-0.784715878749;NANOG{mouse}:-0.793054549522;LEF1_TCF7_TCF7L1,2:-0.799483330127;NRF1:-0.83024503945;CUX2:-0.839537065957;TAL1_TCF{3,4,12}:-0.919154630795;SOX{8,9,10}:-0.982065591988;E2F1..5:-1.06862451097;OCT4_SOX2{dimer}:-1.12413527769;HOX{A5,B5}:-1.14695330491;ONECUT1,2:-1.17248684679;PPARG:-1.19733504455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26877697432;MYB:-1.37479475587;EN1,2:-1.41739923454;YY1:-1.47702109592;NKX3-1:-1.50560408359;STAT5{A,B}:-1.52025170327;PAX8:-1.57402829299;ELK1,4_GABP{A,B1}:-1.73393804299;PAX4:-2.07139775072 | |top_motifs=SRF:3.46348314157;NFATC1..3:2.39625673856;TBP:2.30218334891;NR3C1:2.1196548393;TFAP4:2.09346288918;PRDM1:2.088596218;MAZ:2.05285353961;HMX1:2.04041314742;MYBL2:2.00091177373;FOX{D1,D2}:1.89487033388;FOXO1,3,4:1.85341052575;PATZ1:1.75827434688;TFAP2{A,C}:1.69163134081;TFCP2:1.6740516599;MZF1:1.65250593112;GATA4:1.59396737241;HBP1_HMGB_SSRP1_UBTF:1.5921341754;GTF2I:1.48436886183;ZNF238:1.46523602836;MEF2{A,B,C,D}:1.40649220791;TLX1..3_NFIC{dimer}:1.40263069152;GFI1B:1.40049999104;NR1H4:1.35679017556;GCM1,2:1.35417861596;SP1:1.35106142503;MYFfamily:1.35063394454;SPZ1:1.32903116706;T:1.31266174813;AR:1.26796132912;MED-1{core}:1.24249497672;TLX2:1.1858128832;IKZF1:1.17202317057;HIC1:1.14825709108;STAT2,4,6:1.14493546439;GTF2A1,2:1.13932878521;MTE{core}:1.13711535391;HAND1,2:1.10325379766;EP300:1.08233746155;TBX4,5:1.06990553171;SMAD1..7,9:1.06413826876;RREB1:1.05303626527;PAX1,9:1.0206791999;HSF1,2:1.01761101021;EGR1..3:1.00291057482;FOX{I1,J2}:0.965190066365;MTF1:0.945176953242;KLF4:0.8693948175;SOX5:0.8638453977;IKZF2:0.849901493873;TFAP2B:0.84192967259;NHLH1,2:0.820664250743;POU5F1:0.81019537308;MAFB:0.8038477445;NR6A1:0.796456611011;GLI1..3:0.786502456527;ZNF148:0.783362937691;JUN:0.766656482916;ZNF423:0.762059716611;NKX3-2:0.750438800995;FOXQ1:0.747034032212;XCPE1{core}:0.708576489963;TEAD1:0.706898985614;POU3F1..4:0.705467690079;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.696712373196;TGIF1:0.69518742018;SNAI1..3:0.641728164502;NR5A1,2:0.639849825108;CDC5L:0.603689650737;XBP1:0.588804415982;STAT1,3:0.586269356005;HES1:0.583206346753;HOX{A6,A7,B6,B7}:0.581968047362;GATA6:0.581505023918;POU2F1..3:0.574635505217;ATF6:0.57332724605;ZIC1..3:0.560702600768;PAX5:0.548901432073;ATF4:0.531671632322;UFEwm:0.524740960648;IRF7:0.51676567225;FOXM1:0.508999983312;POU6F1:0.501765843643;EBF1:0.501039587107;PAX6:0.494044271401;BREu{core}:0.467018425665;GZF1:0.445217439859;NKX2-2,8:0.418624518143;ETS1,2:0.415976288338;ZFP161:0.415638837605;FOXL1:0.404206972397;ZEB1:0.400197660367;RBPJ:0.389875259289;SPIB:0.374689857704;MYOD1:0.365268636507;RFX2..5_RFXANK_RFXAP:0.35966705841;RXRA_VDR{dimer}:0.358511020419;HNF1A:0.292881510466;DBP:0.292858774031;IRF1,2:0.292771700274;NFE2L1:0.262542791663;ATF2:0.255550223092;ESR1:0.242447278719;TP53:0.194404982268;CDX1,2,4:0.186678030913;PAX3,7:0.186226837752;VSX1,2:0.170376001637;BPTF:0.163202167786;ALX4:0.155959794821;RXR{A,B,G}:0.152171192417;AHR_ARNT_ARNT2:0.129254739989;FOXN1:0.124086749825;HMGA1,2:0.0972171630549;REST:0.0742077994132;SPI1:0.0582350690396;PBX1:0.0502849394001;SREBF1,2:0.0392214849365;ALX1:0.0370360864268;TEF:0.0346779919645;PITX1..3:0.0244052119395;SOX17:0.00293250674134;FOX{F1,F2,J1}:-0.00279213399406;ARID5B:-0.0159630499696;HNF4A_NR2F1,2:-0.0351221345371;RUNX1..3:-0.0510189077026;LMO2:-0.0545334607855;FOSL2:-0.0703542023076;FOXA2:-0.0945202315676;SOX2:-0.106574083844;NFIX:-0.121510166253;EVI1:-0.132716778133;ATF5_CREB3:-0.134950441823;HLF:-0.16930066306;FOXP3:-0.169881689622;ZBTB6:-0.181896240649;ESRRA:-0.184771092898;CEBPA,B_DDIT3:-0.189739018314;NANOG:-0.195167563816;NFIL3:-0.198344605608;ADNP_IRX_SIX_ZHX:-0.211066383768;NKX2-3_NKX2-5:-0.227101334382;CREB1:-0.233270539061;DMAP1_NCOR{1,2}_SMARC:-0.246386009282;NFE2:-0.272697750708;ZNF384:-0.304272705758;ELF1,2,4:-0.314636412951;NFKB1_REL_RELA:-0.314682168064;NKX2-1,4:-0.328286921927;HOXA9_MEIS1:-0.329900338786;NFE2L2:-0.356766895106;AIRE:-0.364376925596;HIF1A:-0.382046886401;PDX1:-0.390186993513;FOS_FOS{B,L1}_JUN{B,D}:-0.397392186794;bHLH_family:-0.416129443557;FOXP1:-0.432351344413;ZNF143:-0.49506949999;POU1F1:-0.527877821671;FOXD3:-0.541469387719;CRX:-0.554990514747;BACH2:-0.569521563466;HOX{A4,D4}:-0.625113080957;NFY{A,B,C}:-0.634655258327;LHX3,4:-0.674088782432;TFDP1:-0.724516702727;GFI1:-0.73597762777;ZBTB16:-0.73772418067;RORA:-0.74050420769;RFX1:-0.752485257591;PAX2:-0.765855799411;PRRX1,2:-0.766753479024;NKX6-1,2:-0.772908740068;TOPORS:-0.784715878749;NANOG{mouse}:-0.793054549522;LEF1_TCF7_TCF7L1,2:-0.799483330127;NRF1:-0.83024503945;CUX2:-0.839537065957;TAL1_TCF{3,4,12}:-0.919154630795;SOX{8,9,10}:-0.982065591988;E2F1..5:-1.06862451097;OCT4_SOX2{dimer}:-1.12413527769;HOX{A5,B5}:-1.14695330491;ONECUT1,2:-1.17248684679;PPARG:-1.19733504455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26877697432;MYB:-1.37479475587;EN1,2:-1.41739923454;YY1:-1.47702109592;NKX3-1:-1.50560408359;STAT5{A,B}:-1.52025170327;PAX8:-1.57402829299;ELK1,4_GABP{A,B1}:-1.73393804299;PAX4:-2.07139775072 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10011-101C2;search_select_hide=table117:FF:10011-101C2 | |||
}} | }} | ||
Latest revision as of 12:13, 3 June 2020
| Name: | bladder, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10616 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10616
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10616
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0519 |
| 10 | 10 | 0.0728 |
| 100 | 100 | 0.064 |
| 101 | 101 | 0.764 |
| 102 | 102 | 0.235 |
| 103 | 103 | 0.369 |
| 104 | 104 | 0.742 |
| 105 | 105 | 0.599 |
| 106 | 106 | 0.514 |
| 107 | 107 | 0.0297 |
| 108 | 108 | 0.513 |
| 109 | 109 | 0.0243 |
| 11 | 11 | 0.149 |
| 110 | 110 | 0.218 |
| 111 | 111 | 0.035 |
| 112 | 112 | 0.947 |
| 113 | 113 | 0.267 |
| 114 | 114 | 0.0681 |
| 115 | 115 | 0.312 |
| 116 | 116 | 0.856 |
| 117 | 117 | 0.028 |
| 118 | 118 | 0.0443 |
| 119 | 119 | 0.769 |
| 12 | 12 | 0.415 |
| 120 | 120 | 0.00775 |
| 121 | 121 | 0.911 |
| 122 | 122 | 0.927 |
| 123 | 123 | 8.85005e-4 |
| 124 | 124 | 0.593 |
| 125 | 125 | 0.327 |
| 126 | 126 | 0.559 |
| 127 | 127 | 0.48 |
| 128 | 128 | 0.168 |
| 129 | 129 | 0.319 |
| 13 | 13 | 0.0331 |
| 130 | 130 | 0.773 |
| 131 | 131 | 0.0587 |
| 132 | 132 | 0.0838 |
| 133 | 133 | 0.0024 |
| 134 | 134 | 0.0714 |
| 135 | 135 | 0.0102 |
| 136 | 136 | 0.253 |
| 137 | 137 | 0.512 |
| 138 | 138 | 0.842 |
| 139 | 139 | 0.815 |
| 14 | 14 | 0.884 |
| 140 | 140 | 0.561 |
| 141 | 141 | 0.598 |
| 142 | 142 | 0.963 |
| 143 | 143 | 0.124 |
| 144 | 144 | 0.936 |
| 145 | 145 | 0.834 |
| 146 | 146 | 0.947 |
| 147 | 147 | 0.454 |
| 148 | 148 | 0.703 |
| 149 | 149 | 0.183 |
| 15 | 15 | 0.0425 |
| 150 | 150 | 0.828 |
| 151 | 151 | 0.939 |
| 152 | 152 | 0.866 |
| 153 | 153 | 0.219 |
| 154 | 154 | 0.798 |
| 155 | 155 | 0.381 |
| 156 | 156 | 0.519 |
| 157 | 157 | 0.954 |
| 158 | 158 | 0.662 |
| 159 | 159 | 0.917 |
| 16 | 16 | 0.513 |
| 160 | 160 | 0.971 |
| 161 | 161 | 0.23 |
| 162 | 162 | 0.88 |
| 163 | 163 | 0.761 |
| 164 | 164 | 0.00435 |
| 165 | 165 | 0.686 |
| 166 | 166 | 0.188 |
| 167 | 167 | 0.0536 |
| 168 | 168 | 0.227 |
| 169 | 169 | 0.791 |
| 17 | 17 | 0.863 |
| 18 | 18 | 0.154 |
| 19 | 19 | 0.189 |
| 2 | 2 | 0.0149 |
| 20 | 20 | 0.0235 |
| 21 | 21 | 0.375 |
| 22 | 22 | 0.65 |
| 23 | 23 | 0.112 |
| 24 | 24 | 0.495 |
| 25 | 25 | 0.34 |
| 26 | 26 | 0.0331 |
| 27 | 27 | 0.603 |
| 28 | 28 | 0.486 |
| 29 | 29 | 0.00241 |
| 3 | 3 | 0.285 |
| 30 | 30 | 0.0229 |
| 31 | 31 | 0.826 |
| 32 | 32 | 0.611 |
| 33 | 33 | 0.0928 |
| 34 | 34 | 0.338 |
| 35 | 35 | 0.331 |
| 36 | 36 | 0.0125 |
| 37 | 37 | 0.181 |
| 38 | 38 | 0.691 |
| 39 | 39 | 0.166 |
| 4 | 4 | 0.0498 |
| 40 | 40 | 0.0277 |
| 41 | 41 | 0.112 |
| 42 | 42 | 0.296 |
| 43 | 43 | 0.509 |
| 44 | 44 | 0.988 |
| 45 | 45 | 0.149 |
| 46 | 46 | 0.389 |
| 47 | 47 | 0.131 |
| 48 | 48 | 0.253 |
| 49 | 49 | 0.366 |
| 5 | 5 | 0.715 |
| 50 | 50 | 0.516 |
| 51 | 51 | 0.799 |
| 52 | 52 | 0.0927 |
| 53 | 53 | 0.898 |
| 54 | 54 | 0.856 |
| 55 | 55 | 0.765 |
| 56 | 56 | 0.876 |
| 57 | 57 | 0.156 |
| 58 | 58 | 0.918 |
| 59 | 59 | 0.726 |
| 6 | 6 | 0.373 |
| 60 | 60 | 0.596 |
| 61 | 61 | 0.465 |
| 62 | 62 | 0.697 |
| 63 | 63 | 0.61 |
| 64 | 64 | 0.29 |
| 65 | 65 | 0.934 |
| 66 | 66 | 0.00545 |
| 67 | 67 | 0.482 |
| 68 | 68 | 0.389 |
| 69 | 69 | 0.759 |
| 7 | 7 | 0.277 |
| 70 | 70 | 0.312 |
| 71 | 71 | 0.0842 |
| 72 | 72 | 0.703 |
| 73 | 73 | 0.0311 |
| 74 | 74 | 0.895 |
| 75 | 75 | 0.00718 |
| 76 | 76 | 0.0268 |
| 77 | 77 | 0.173 |
| 78 | 78 | 0.374 |
| 79 | 79 | 0.499 |
| 8 | 8 | 0.32 |
| 80 | 80 | 0.432 |
| 81 | 81 | 0.806 |
| 82 | 82 | 0.996 |
| 83 | 83 | 0.21 |
| 84 | 84 | 0.857 |
| 85 | 85 | 0.459 |
| 86 | 86 | 0.777 |
| 87 | 87 | 0.0316 |
| 88 | 88 | 0.778 |
| 89 | 89 | 0.623 |
| 9 | 9 | 0.307 |
| 90 | 90 | 0.219 |
| 91 | 91 | 0.0234 |
| 92 | 92 | 0.412 |
| 93 | 93 | 0.0109 |
| 94 | 94 | 0.0685 |
| 95 | 95 | 4.73561e-4 |
| 96 | 96 | 0.835 |
| 97 | 97 | 0.905 |
| 98 | 98 | 0.112 |
| 99 | 99 | 0.429 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10616
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010011 human bladder - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001255 (urinary bladder)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0002323 (body cavity)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0001556 (lower urinary tract)
0001008 (renal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010011 (human bladder - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
