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{{f5samples
{{f5samples
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Line 35: Line 41:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.ctss.bed.gz
|id=FF:10071-101I8
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|name=duodenum, fetal, donor1
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Line 42: Line 60:
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|rna_box=101
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|rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum
|rna_catalog_number=Cat:RtHFN: Small Intestine: Duodenum
Line 57: Line 78:
|rna_weight_ug=10
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|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
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|sample_ethnicity=A?
|sample_ethnicity=A?
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.60588673755256e-221!GO:0043226;organelle;5.60611914026037e-149!GO:0043229;intracellular organelle;2.19865682605046e-148!GO:0043227;membrane-bound organelle;1.00914682880768e-138!GO:0043231;intracellular membrane-bound organelle;1.42006910414876e-138!GO:0005737;cytoplasm;2.74290907718842e-126!GO:0044422;organelle part;4.26749126488845e-87!GO:0044446;intracellular organelle part;6.58057264743322e-86!GO:0044444;cytoplasmic part;7.28337771773055e-78!GO:0032991;macromolecular complex;1.33709402549098e-74!GO:0005515;protein binding;8.98210031721691e-74!GO:0005634;nucleus;7.48598900496718e-67!GO:0016043;cellular component organization and biogenesis;4.19575326949331e-63!GO:0003723;RNA binding;6.96543048012864e-57!GO:0030529;ribonucleoprotein complex;1.76117075943318e-55!GO:0043170;macromolecule metabolic process;1.30581500976369e-53!GO:0044238;primary metabolic process;5.68387197828425e-50!GO:0044428;nuclear part;9.27680931979698e-49!GO:0044237;cellular metabolic process;8.34716149662964e-48!GO:0043283;biopolymer metabolic process;2.60365496901128e-43!GO:0043233;organelle lumen;2.23518160953085e-40!GO:0031974;membrane-enclosed lumen;2.23518160953085e-40!GO:0043234;protein complex;6.24193210444825e-40!GO:0010467;gene expression;3.29968975821496e-38!GO:0033036;macromolecule localization;2.18634193245902e-36!GO:0006996;organelle organization and biogenesis;3.86692445180721e-36!GO:0015031;protein transport;1.1467328782205e-35!GO:0006396;RNA processing;4.15589979145571e-34!GO:0005840;ribosome;2.15021328007083e-32!GO:0008104;protein localization;2.30512494124814e-32!GO:0045184;establishment of protein localization;3.63062716751843e-32!GO:0016071;mRNA metabolic process;4.4776155857221e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.75299525472316e-31!GO:0005739;mitochondrion;4.49014299938777e-31!GO:0046907;intracellular transport;5.64902357676668e-31!GO:0031090;organelle membrane;1.79812691160413e-30!GO:0008380;RNA splicing;4.39304941408485e-30!GO:0031981;nuclear lumen;6.30293330860856e-29!GO:0003735;structural constituent of ribosome;1.18942099427753e-28!GO:0006397;mRNA processing;6.10683423825931e-28!GO:0051649;establishment of cellular localization;5.30282265136758e-27!GO:0006412;translation;1.18890299898489e-26!GO:0051641;cellular localization;1.43592918629721e-26!GO:0019538;protein metabolic process;4.14329759214363e-26!GO:0033279;ribosomal subunit;1.18065824099676e-25!GO:0031975;envelope;1.19834144802279e-25!GO:0065003;macromolecular complex assembly;1.51132249835417e-25!GO:0031967;organelle envelope;1.82117007877965e-25!GO:0003676;nucleic acid binding;6.2006872483362e-25!GO:0005829;cytosol;2.43899960006406e-24!GO:0044429;mitochondrial part;5.75811479514052e-24!GO:0043228;non-membrane-bound organelle;8.03069961899119e-24!GO:0043232;intracellular non-membrane-bound organelle;8.03069961899119e-24!GO:0022607;cellular component assembly;2.04860860805686e-23!GO:0044267;cellular protein metabolic process;1.11107576654595e-22!GO:0044260;cellular macromolecule metabolic process;2.9475177211588e-22!GO:0006886;intracellular protein transport;4.90590768481995e-22!GO:0016070;RNA metabolic process;1.64233158698809e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.52436018237211e-21!GO:0044445;cytosolic part;4.59402373628624e-20!GO:0016192;vesicle-mediated transport;2.04410784376845e-19!GO:0000166;nucleotide binding;2.63408203442035e-19!GO:0009059;macromolecule biosynthetic process;3.95514913683585e-19!GO:0006119;oxidative phosphorylation;5.56386604554186e-19!GO:0005681;spliceosome;5.80437232458825e-19!GO:0005654;nucleoplasm;1.37126736282303e-18!GO:0006259;DNA metabolic process;1.46684427571476e-17!GO:0005794;Golgi apparatus;1.72311680486567e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;3.49246662207047e-17!GO:0006512;ubiquitin cycle;6.18449059754347e-17!GO:0005740;mitochondrial envelope;7.05872841987573e-17!GO:0031966;mitochondrial membrane;1.85273309383163e-16!GO:0009058;biosynthetic process;3.30343021333721e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.40452699772188e-16!GO:0019866;organelle inner membrane;3.59860320329296e-16!GO:0006323;DNA packaging;4.92531090106022e-16!GO:0016874;ligase activity;7.00866335249875e-16!GO:0044451;nucleoplasm part;1.02570502656221e-15!GO:0044249;cellular biosynthetic process;1.56992201314277e-15!GO:0016462;pyrophosphatase activity;3.94633985837069e-15!GO:0017111;nucleoside-triphosphatase activity;4.04560738977693e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.4635813686965e-15!GO:0044455;mitochondrial membrane part;5.7652345706126e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.18277174906588e-15!GO:0051276;chromosome organization and biogenesis;7.82856307657294e-15!GO:0005743;mitochondrial inner membrane;9.8004945477305e-15!GO:0043412;biopolymer modification;3.02860398351307e-14!GO:0015934;large ribosomal subunit;5.65612101198049e-14!GO:0032553;ribonucleotide binding;8.8578088162929e-14!GO:0032555;purine ribonucleotide binding;8.8578088162929e-14!GO:0005746;mitochondrial respiratory chain;1.55381746149181e-13!GO:0006464;protein modification process;3.0873707996724e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.31346298672522e-13!GO:0003954;NADH dehydrogenase activity;4.31346298672522e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.31346298672522e-13!GO:0043687;post-translational protein modification;4.9206907963068e-13!GO:0048193;Golgi vesicle transport;1.29906669750587e-12!GO:0007399;nervous system development;1.35677765524966e-12!GO:0015935;small ribosomal subunit;1.39431255775054e-12!GO:0008134;transcription factor binding;2.33642226815864e-12!GO:0012505;endomembrane system;3.96864862099638e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.96864862099638e-12!GO:0006457;protein folding;4.48758248263626e-12!GO:0017076;purine nucleotide binding;5.94173695084405e-12!GO:0022618;protein-RNA complex assembly;1.4057204322843e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.61458871980851e-11!GO:0031982;vesicle;2.68476061264805e-11!GO:0031988;membrane-bound vesicle;3.17763034178292e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.20855034252632e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.54073023869066e-11!GO:0042773;ATP synthesis coupled electron transport;3.54073023869066e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.80867324519815e-11!GO:0045271;respiratory chain complex I;3.80867324519815e-11!GO:0005747;mitochondrial respiratory chain complex I;3.80867324519815e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.16257873344014e-11!GO:0019941;modification-dependent protein catabolic process;4.29274272609745e-11!GO:0043632;modification-dependent macromolecule catabolic process;4.29274272609745e-11!GO:0006333;chromatin assembly or disassembly;5.7823303419399e-11!GO:0015630;microtubule cytoskeleton;6.69158352132107e-11!GO:0044257;cellular protein catabolic process;6.73864376603618e-11!GO:0031410;cytoplasmic vesicle;8.50626127837041e-11!GO:0016023;cytoplasmic membrane-bound vesicle;1.09940730895771e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.09940730895771e-10!GO:0031965;nuclear membrane;1.29849980184528e-10!GO:0045045;secretory pathway;1.37867706248725e-10!GO:0006605;protein targeting;1.44557131762549e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.31526425580087e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.38441131876308e-10!GO:0000375;RNA splicing, via transesterification reactions;3.38441131876308e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.38441131876308e-10!GO:0048770;pigment granule;3.38441131876308e-10!GO:0042470;melanosome;3.38441131876308e-10!GO:0008135;translation factor activity, nucleic acid binding;3.81086044450428e-10!GO:0050794;regulation of cellular process;4.48332982814512e-10!GO:0016568;chromatin modification;5.24183225301989e-10!GO:0008639;small protein conjugating enzyme activity;7.14582336380818e-10!GO:0051082;unfolded protein binding;7.18203238127821e-10!GO:0050789;regulation of biological process;9.48771230370293e-10!GO:0004842;ubiquitin-protein ligase activity;9.74018501061366e-10!GO:0007010;cytoskeleton organization and biogenesis;1.83185930995142e-09!GO:0005635;nuclear envelope;1.93286403996925e-09!GO:0032559;adenyl ribonucleotide binding;2.63364622076154e-09!GO:0008565;protein transporter activity;3.15873421890364e-09!GO:0006913;nucleocytoplasmic transport;3.41846236763456e-09!GO:0019787;small conjugating protein ligase activity;3.52521766118825e-09!GO:0005524;ATP binding;3.52521766118825e-09!GO:0044265;cellular macromolecule catabolic process;3.90989350962981e-09!GO:0051169;nuclear transport;5.9692427885002e-09!GO:0031980;mitochondrial lumen;6.00179602913469e-09!GO:0005759;mitochondrial matrix;6.00179602913469e-09!GO:0007049;cell cycle;8.1145236651513e-09!GO:0065004;protein-DNA complex assembly;8.57871590889234e-09!GO:0019829;cation-transporting ATPase activity;8.57871590889234e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.94907209924093e-09!GO:0005730;nucleolus;1.06828485622103e-08!GO:0044431;Golgi apparatus part;1.56666329869166e-08!GO:0044453;nuclear membrane part;2.11389644732308e-08!GO:0000502;proteasome complex (sensu Eukaryota);2.28650963380085e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48082979001451e-08!GO:0006793;phosphorus metabolic process;2.62483782321389e-08!GO:0006796;phosphate metabolic process;2.62483782321389e-08!GO:0030163;protein catabolic process;3.4436217458923e-08!GO:0003924;GTPase activity;3.64558556654449e-08!GO:0016881;acid-amino acid ligase activity;4.04059680475482e-08!GO:0000785;chromatin;4.11279708511927e-08!GO:0043285;biopolymer catabolic process;4.56741191256963e-08!GO:0016604;nuclear body;4.69335966685308e-08!GO:0007264;small GTPase mediated signal transduction;4.99286433863419e-08!GO:0005643;nuclear pore;8.05063330888328e-08!GO:0016607;nuclear speck;8.07250549268534e-08!GO:0005761;mitochondrial ribosome;9.61158395968433e-08!GO:0000313;organellar ribosome;9.61158395968433e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.02219516295835e-07!GO:0030554;adenyl nucleotide binding;1.04945390916739e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16230783670757e-07!GO:0030135;coated vesicle;1.24423832059495e-07!GO:0003712;transcription cofactor activity;1.28290887940253e-07!GO:0003743;translation initiation factor activity;1.3401115536418e-07!GO:0006403;RNA localization;1.35713072265382e-07!GO:0015631;tubulin binding;1.88904893640425e-07!GO:0006446;regulation of translational initiation;1.97235715410295e-07!GO:0019222;regulation of metabolic process;2.55581429037835e-07!GO:0050657;nucleic acid transport;2.73300151001911e-07!GO:0051236;establishment of RNA localization;2.73300151001911e-07!GO:0050658;RNA transport;2.73300151001911e-07!GO:0006334;nucleosome assembly;3.17831059842945e-07!GO:0015986;ATP synthesis coupled proton transport;3.66612394497799e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.66612394497799e-07!GO:0006461;protein complex assembly;4.09072264617132e-07!GO:0008092;cytoskeletal protein binding;4.50026709033405e-07!GO:0005874;microtubule;5.8421294715078e-07!GO:0031497;chromatin assembly;5.92517145584422e-07!GO:0005694;chromosome;6.12830975803912e-07!GO:0042623;ATPase activity, coupled;6.62112742465654e-07!GO:0016887;ATPase activity;7.25505522314705e-07!GO:0032446;protein modification by small protein conjugation;8.27653758053401e-07!GO:0006413;translational initiation;8.9735967916223e-07!GO:0048475;coated membrane;9.75787615838576e-07!GO:0030117;membrane coat;9.75787615838576e-07!GO:0016310;phosphorylation;1.01654022155365e-06!GO:0032940;secretion by cell;1.01654022155365e-06!GO:0000902;cell morphogenesis;1.26198644191537e-06!GO:0032989;cellular structure morphogenesis;1.26198644191537e-06!GO:0009057;macromolecule catabolic process;1.29896459517142e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.73063593915894e-06!GO:0009141;nucleoside triphosphate metabolic process;1.85651585025241e-06!GO:0000139;Golgi membrane;1.99977201607391e-06!GO:0051186;cofactor metabolic process;2.01526314994205e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.04367286213893e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.04367286213893e-06!GO:0005525;GTP binding;2.12308567525525e-06!GO:0004386;helicase activity;2.25666549370617e-06!GO:0044427;chromosomal part;2.36651071440118e-06!GO:0030182;neuron differentiation;2.62998447752102e-06!GO:0016567;protein ubiquitination;2.72586210896426e-06!GO:0009150;purine ribonucleotide metabolic process;2.97056266074442e-06!GO:0017038;protein import;3.2249046886688e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.64673080363526e-06!GO:0006163;purine nucleotide metabolic process;4.09266880038216e-06!GO:0030030;cell projection organization and biogenesis;4.17514096525462e-06!GO:0048858;cell projection morphogenesis;4.17514096525462e-06!GO:0032990;cell part morphogenesis;4.17514096525462e-06!GO:0046034;ATP metabolic process;4.23548154919757e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.92454962732217e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.92454962732217e-06!GO:0022402;cell cycle process;5.24834930951383e-06!GO:0009259;ribonucleotide metabolic process;5.3569430231717e-06!GO:0005768;endosome;5.50161234319312e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.73801650462418e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.73801650462418e-06!GO:0008287;protein serine/threonine phosphatase complex;6.91896936127589e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.4070243501101e-06!GO:0043005;neuron projection;7.46952794071175e-06!GO:0006366;transcription from RNA polymerase II promoter;7.46952794071175e-06!GO:0006974;response to DNA damage stimulus;7.96740341372203e-06!GO:0005083;small GTPase regulator activity;8.12071740235831e-06!GO:0051028;mRNA transport;8.15934770940449e-06!GO:0048699;generation of neurons;9.16634062627621e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.0044338559238e-05!GO:0006754;ATP biosynthetic process;1.02180593534187e-05!GO:0006753;nucleoside phosphate metabolic process;1.02180593534187e-05!GO:0005905;coated pit;1.03228073945739e-05!GO:0006164;purine nucleotide biosynthetic process;1.0376281895181e-05!GO:0009060;aerobic respiration;1.0685551326568e-05!GO:0008017;microtubule binding;1.08714068505848e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.27998502439194e-05!GO:0022008;neurogenesis;1.41190869967494e-05!GO:0019899;enzyme binding;1.54858849230095e-05!GO:0045259;proton-transporting ATP synthase complex;1.59797047775019e-05!GO:0006350;transcription;1.61024437439302e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.7702038191586e-05!GO:0031252;leading edge;1.8128686788087e-05!GO:0032561;guanyl ribonucleotide binding;1.87804804915187e-05!GO:0019001;guanyl nucleotide binding;1.87804804915187e-05!GO:0042254;ribosome biogenesis and assembly;1.98658215563454e-05!GO:0009260;ribonucleotide biosynthetic process;2.02694884702282e-05!GO:0051726;regulation of cell cycle;2.25742559493699e-05!GO:0046930;pore complex;2.45183739384208e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.49382314951088e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.49382314951088e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.49382314951088e-05!GO:0030120;vesicle coat;2.50585762741637e-05!GO:0030662;coated vesicle membrane;2.50585762741637e-05!GO:0045786;negative regulation of progression through cell cycle;2.58898680352606e-05!GO:0048523;negative regulation of cellular process;2.58898680352606e-05!GO:0008026;ATP-dependent helicase activity;2.72095573073144e-05!GO:0000904;cellular morphogenesis during differentiation;2.8359794178746e-05!GO:0048471;perinuclear region of cytoplasm;2.85676577562749e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.91557649114346e-05!GO:0000074;regulation of progression through cell cycle;3.06486084885286e-05!GO:0045333;cellular respiration;3.38815261528208e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.38815261528208e-05!GO:0006281;DNA repair;3.65541542914352e-05!GO:0044248;cellular catabolic process;3.87520592011437e-05!GO:0000245;spliceosome assembly;3.98603326209514e-05!GO:0048666;neuron development;4.05285959871485e-05!GO:0031323;regulation of cellular metabolic process;4.29099438225619e-05!GO:0031175;neurite development;4.62218046805369e-05!GO:0030029;actin filament-based process;4.7151103225321e-05!GO:0048667;neuron morphogenesis during differentiation;4.82327031984238e-05!GO:0048812;neurite morphogenesis;4.82327031984238e-05!GO:0010468;regulation of gene expression;5.02976720112751e-05!GO:0065007;biological regulation;5.03455399405028e-05!GO:0016044;membrane organization and biogenesis;5.06981807345836e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.11002713208877e-05!GO:0065002;intracellular protein transport across a membrane;5.14207106593032e-05!GO:0007017;microtubule-based process;7.04290404519298e-05!GO:0003729;mRNA binding;7.16367763418814e-05!GO:0043038;amino acid activation;7.79404325244225e-05!GO:0006418;tRNA aminoacylation for protein translation;7.79404325244225e-05!GO:0043039;tRNA aminoacylation;7.79404325244225e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.68724907935037e-05!GO:0015078;hydrogen ion transmembrane transporter activity;0.00010055415129525!GO:0005813;centrosome;0.00010108729964496!GO:0032774;RNA biosynthetic process;0.000104468529965942!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000108672468108937!GO:0006351;transcription, DNA-dependent;0.000110376148346934!GO:0006732;coenzyme metabolic process;0.00011085411948908!GO:0005769;early endosome;0.000114995356912955!GO:0009055;electron carrier activity;0.000122114394463426!GO:0030695;GTPase regulator activity;0.000129714014446272!GO:0016363;nuclear matrix;0.000139757173221847!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000140776107347437!GO:0007409;axonogenesis;0.000145958870005458!GO:0005793;ER-Golgi intermediate compartment;0.000146476171057468!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000146645601451345!GO:0044440;endosomal part;0.000156733286520967!GO:0010008;endosome membrane;0.000156733286520967!GO:0019717;synaptosome;0.00016839380028542!GO:0006606;protein import into nucleus;0.000170289230760299!GO:0048489;synaptic vesicle transport;0.000173178680268525!GO:0003697;single-stranded DNA binding;0.000181863068359919!GO:0006099;tricarboxylic acid cycle;0.000190466061212273!GO:0046356;acetyl-CoA catabolic process;0.000190466061212273!GO:0005798;Golgi-associated vesicle;0.000194056069971769!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00019510146395629!GO:0030427;site of polarized growth;0.000195963394396539!GO:0003713;transcription coactivator activity;0.000199753666203478!GO:0043566;structure-specific DNA binding;0.000205767113798405!GO:0000151;ubiquitin ligase complex;0.000232269825278046!GO:0005875;microtubule associated complex;0.00024544734190729!GO:0051427;hormone receptor binding;0.000249467408195733!GO:0030027;lamellipodium;0.000252709110797835!GO:0030136;clathrin-coated vesicle;0.000275791718594288!GO:0043623;cellular protein complex assembly;0.000276484203068888!GO:0051170;nuclear import;0.000280690854954999!GO:0051168;nuclear export;0.000287955980679335!GO:0051128;regulation of cellular component organization and biogenesis;0.000291574688715636!GO:0030426;growth cone;0.00030399543379545!GO:0051246;regulation of protein metabolic process;0.000310362448145725!GO:0005783;endoplasmic reticulum;0.000315159573373623!GO:0048519;negative regulation of biological process;0.000345065098122304!GO:0006260;DNA replication;0.000371802217759878!GO:0006613;cotranslational protein targeting to membrane;0.000386393436315627!GO:0005815;microtubule organizing center;0.000427177900758294!GO:0006364;rRNA processing;0.000443078785138733!GO:0035257;nuclear hormone receptor binding;0.000460722244699009!GO:0045449;regulation of transcription;0.000463405367272211!GO:0006084;acetyl-CoA metabolic process;0.000552990394547445!GO:0004674;protein serine/threonine kinase activity;0.000583420981408076!GO:0003724;RNA helicase activity;0.000592899896404294!GO:0007265;Ras protein signal transduction;0.000616864363176122!GO:0005667;transcription factor complex;0.000683242415409219!GO:0016564;transcription repressor activity;0.000700304865182645!GO:0050767;regulation of neurogenesis;0.000725019903001595!GO:0030118;clathrin coat;0.000733077526202575!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000740757788161675!GO:0030425;dendrite;0.000750933909309048!GO:0016481;negative regulation of transcription;0.000909763212336662!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000911544449929752!GO:0008654;phospholipid biosynthetic process;0.000928330678359999!GO:0006355;regulation of transcription, DNA-dependent;0.000957701858863273!GO:0006399;tRNA metabolic process;0.000958962442514881!GO:0009109;coenzyme catabolic process;0.000967029575596313!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000999042268010566!GO:0008601;protein phosphatase type 2A regulator activity;0.000999042268010566!GO:0006892;post-Golgi vesicle-mediated transport;0.00101407136729253!GO:0005762;mitochondrial large ribosomal subunit;0.00106571949027006!GO:0000315;organellar large ribosomal subunit;0.00106571949027006!GO:0009892;negative regulation of metabolic process;0.00106841052397986!GO:0016072;rRNA metabolic process;0.00109049482214078!GO:0051188;cofactor biosynthetic process;0.00112176184062776!GO:0003714;transcription corepressor activity;0.00143084909288494!GO:0006414;translational elongation;0.00155591275143694!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015952700506474!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015952700506474!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015952700506474!GO:0006752;group transfer coenzyme metabolic process;0.001641460840269!GO:0019208;phosphatase regulator activity;0.00165724103203297!GO:0051087;chaperone binding;0.00195989250278664!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00195989250278664!GO:0015399;primary active transmembrane transporter activity;0.00195989250278664!GO:0006891;intra-Golgi vesicle-mediated transport;0.00196442955671318!GO:0006897;endocytosis;0.0019794262665094!GO:0010324;membrane invagination;0.0019794262665094!GO:0008270;zinc ion binding;0.00210496047015373!GO:0016740;transferase activity;0.00216209011368247!GO:0000159;protein phosphatase type 2A complex;0.00226429368619539!GO:0031324;negative regulation of cellular metabolic process;0.00232124749059642!GO:0007269;neurotransmitter secretion;0.00247966072726265!GO:0051056;regulation of small GTPase mediated signal transduction;0.00250983827340375!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00251599008910979!GO:0016311;dephosphorylation;0.00255918038752943!GO:0051187;cofactor catabolic process;0.00258211220343207!GO:0005770;late endosome;0.0025843726324401!GO:0006810;transport;0.00259329601011043!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00260367459592089!GO:0031901;early endosome membrane;0.00288032180980447!GO:0000278;mitotic cell cycle;0.00306995440626603!GO:0005938;cell cortex;0.00316688988579482!GO:0005839;proteasome core complex (sensu Eukaryota);0.00317779696408399!GO:0016301;kinase activity;0.00335283627911469!GO:0003682;chromatin binding;0.00340690648739994!GO:0003779;actin binding;0.00340690648739994!GO:0045892;negative regulation of transcription, DNA-dependent;0.00398760203383313!GO:0008250;oligosaccharyl transferase complex;0.00404870135404711!GO:0000059;protein import into nucleus, docking;0.0042276514831121!GO:0044432;endoplasmic reticulum part;0.00435253104993706!GO:0031072;heat shock protein binding;0.00451227531223739!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00459489415601711!GO:0006607;NLS-bearing substrate import into nucleus;0.00468937661910451!GO:0016585;chromatin remodeling complex;0.00478198459274189!GO:0008022;protein C-terminus binding;0.00484342422161878!GO:0031124;mRNA 3'-end processing;0.00486753959071278!GO:0008186;RNA-dependent ATPase activity;0.00491641368614969!GO:0016197;endosome transport;0.00504075792778498!GO:0051179;localization;0.00542257167863522!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00542257167863522!GO:0009719;response to endogenous stimulus;0.0056304912981388!GO:0030137;COPI-coated vesicle;0.00575218555508157!GO:0006338;chromatin remodeling;0.00600911742165931!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00615171502169909!GO:0051920;peroxiredoxin activity;0.00623413020555337!GO:0016050;vesicle organization and biogenesis;0.00634915461671577!GO:0019888;protein phosphatase regulator activity;0.00647111435910188!GO:0044448;cell cortex part;0.0065968263403068!GO:0007005;mitochondrion organization and biogenesis;0.00673994807223738!GO:0006595;polyamine metabolic process;0.00688718450936619!GO:0005869;dynactin complex;0.00697187119870266!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00697808479234521!GO:0008139;nuclear localization sequence binding;0.00702157418844284!GO:0016584;nucleosome positioning;0.00707306845165235!GO:0008154;actin polymerization and/or depolymerization;0.00739833840891926!GO:0006470;protein amino acid dephosphorylation;0.00771539407395074!GO:0004576;oligosaccharyl transferase activity;0.00798208909152984!GO:0030031;cell projection biogenesis;0.00804233509518371!GO:0040029;regulation of gene expression, epigenetic;0.00829085789156717!GO:0030133;transport vesicle;0.00831667187110732!GO:0003746;translation elongation factor activity;0.00831667187110732!GO:0000786;nucleosome;0.0084098510948243!GO:0046467;membrane lipid biosynthetic process;0.0084738277545573!GO:0004298;threonine endopeptidase activity;0.00854068414241831!GO:0006402;mRNA catabolic process;0.00885589623535449!GO:0051252;regulation of RNA metabolic process;0.00885973067406712!GO:0016126;sterol biosynthetic process;0.00903605511055495!GO:0004721;phosphoprotein phosphatase activity;0.00904723477328005!GO:0006405;RNA export from nucleus;0.00938710583257809!GO:0022406;membrane docking;0.00952512871343702!GO:0048278;vesicle docking;0.00952512871343702!GO:0005048;signal sequence binding;0.00953903306855863!GO:0030660;Golgi-associated vesicle membrane;0.00963798865890001!GO:0043021;ribonucleoprotein binding;0.00981307009621576!GO:0019904;protein domain specific binding;0.00985395387192468!GO:0009108;coenzyme biosynthetic process;0.00985395387192468!GO:0006612;protein targeting to membrane;0.00990028424675424!GO:0043025;cell soma;0.0103500998788032!GO:0005885;Arp2/3 protein complex;0.0104428298142666!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0109848311308717!GO:0003730;mRNA 3'-UTR binding;0.0110777161927414!GO:0000209;protein polyubiquitination;0.0111298567866566!GO:0043492;ATPase activity, coupled to movement of substances;0.0111298567866566!GO:0003690;double-stranded DNA binding;0.0111632471105874!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0112852370657304!GO:0046578;regulation of Ras protein signal transduction;0.0113996248699468!GO:0004004;ATP-dependent RNA helicase activity;0.0127660883922144!GO:0019887;protein kinase regulator activity;0.0128772404363411!GO:0048487;beta-tubulin binding;0.0129239340677491!GO:0030658;transport vesicle membrane;0.0134302485075272!GO:0006650;glycerophospholipid metabolic process;0.0138954200073021!GO:0006904;vesicle docking during exocytosis;0.0140341397400832!GO:0043681;protein import into mitochondrion;0.0141367539331327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0141367539331327!GO:0006916;anti-apoptosis;0.0141650195589781!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0142025868259841!GO:0022890;inorganic cation transmembrane transporter activity;0.0143329910248166!GO:0000792;heterochromatin;0.0144034268775535!GO:0005791;rough endoplasmic reticulum;0.0147186852742641!GO:0031123;RNA 3'-end processing;0.0150591570965962!GO:0048167;regulation of synaptic plasticity;0.0151645227094471!GO:0003711;transcription elongation regulator activity;0.0155202734271617!GO:0007411;axon guidance;0.0155202734271617!GO:0000314;organellar small ribosomal subunit;0.016120067304669!GO:0005763;mitochondrial small ribosomal subunit;0.016120067304669!GO:0008021;synaptic vesicle;0.0161897821595714!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0162773161081687!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0162773161081687!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0166292928695982!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168174451388766!GO:0007019;microtubule depolymerization;0.0168174451388766!GO:0045055;regulated secretory pathway;0.0173816399644439!GO:0016272;prefoldin complex;0.0177493410180739!GO:0007417;central nervous system development;0.0184023284139717!GO:0006695;cholesterol biosynthetic process;0.0187002854032492!GO:0007006;mitochondrial membrane organization and biogenesis;0.0191152932725042!GO:0019843;rRNA binding;0.0195297578088079!GO:0000118;histone deacetylase complex;0.0195315745840647!GO:0005637;nuclear inner membrane;0.0196081161571615!GO:0008286;insulin receptor signaling pathway;0.0196593536038809!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0197547676254403!GO:0033043;regulation of organelle organization and biogenesis;0.0197547676254403!GO:0019902;phosphatase binding;0.0198093729727526!GO:0006383;transcription from RNA polymerase III promoter;0.0201340642858106!GO:0005868;cytoplasmic dynein complex;0.020650991207641!GO:0016563;transcription activator activity;0.0210499153658299!GO:0006378;mRNA polyadenylation;0.0210766176942948!GO:0031301;integral to organelle membrane;0.0211908463102304!GO:0007050;cell cycle arrest;0.0213390557498978!GO:0032594;protein transport within lipid bilayer;0.0217522163755861!GO:0032907;transforming growth factor-beta3 production;0.0217522163755861!GO:0032596;protein transport into lipid raft;0.0217522163755861!GO:0032910;regulation of transforming growth factor-beta3 production;0.0217522163755861!GO:0032595;B cell receptor transport within lipid bilayer;0.0217522163755861!GO:0033606;chemokine receptor transport within lipid bilayer;0.0217522163755861!GO:0032600;chemokine receptor transport out of lipid raft;0.0217522163755861!GO:0032599;protein transport out of lipid raft;0.0217522163755861!GO:0032597;B cell receptor transport into lipid raft;0.0217522163755861!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0217522163755861!GO:0051261;protein depolymerization;0.0224516432252596!GO:0000339;RNA cap binding;0.0226328963549033!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0228079612694997!GO:0004667;prostaglandin-D synthase activity;0.0228079612694997!GO:0050802;circadian sleep/wake cycle, sleep;0.0228079612694997!GO:0022410;circadian sleep/wake cycle process;0.0228079612694997!GO:0042749;regulation of circadian sleep/wake cycle;0.0228079612694997!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0231986542808248!GO:0030867;rough endoplasmic reticulum membrane;0.0232323341504349!GO:0051234;establishment of localization;0.0233663391470114!GO:0003677;DNA binding;0.0237010927762065!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0238785884351016!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0242867036645497!GO:0019198;transmembrane receptor protein phosphatase activity;0.0242867036645497!GO:0050770;regulation of axonogenesis;0.0250606783868496!GO:0043087;regulation of GTPase activity;0.0253261921391448!GO:0018196;peptidyl-asparagine modification;0.0257016879996689!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0257016879996689!GO:0004722;protein serine/threonine phosphatase activity;0.0258271891235457!GO:0006352;transcription initiation;0.0258271891235457!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0258526592624813!GO:0019894;kinesin binding;0.0259779950243031!GO:0030032;lamellipodium biogenesis;0.0262315201498425!GO:0030132;clathrin coat of coated pit;0.0268511426667381!GO:0019207;kinase regulator activity;0.0270945228932195!GO:0003899;DNA-directed RNA polymerase activity;0.0271188562166195!GO:0008088;axon cargo transport;0.0271202847794766!GO:0015980;energy derivation by oxidation of organic compounds;0.0273026432956574!GO:0012506;vesicle membrane;0.0275228756690754!GO:0030119;AP-type membrane coat adaptor complex;0.0276100854376498!GO:0050750;low-density lipoprotein receptor binding;0.0276632465324128!GO:0005789;endoplasmic reticulum membrane;0.0278016149823402!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0278478960153778!GO:0016569;covalent chromatin modification;0.0278841776764758!GO:0005521;lamin binding;0.0280128380233695!GO:0035258;steroid hormone receptor binding;0.0284160808769983!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0284160808769983!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0284160808769983!GO:0043069;negative regulation of programmed cell death;0.0298205672254892!GO:0005684;U2-dependent spliceosome;0.030870657963172!GO:0051301;cell division;0.0316571396908074!GO:0048468;cell development;0.0321407684539763!GO:0030175;filopodium;0.0329055188334043!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0332133188961357!GO:0009056;catabolic process;0.0332415876597119!GO:0030663;COPI coated vesicle membrane;0.0337734773398585!GO:0030126;COPI vesicle coat;0.0337734773398585!GO:0003684;damaged DNA binding;0.0340237512965193!GO:0008312;7S RNA binding;0.0340237512965193!GO:0046474;glycerophospholipid biosynthetic process;0.0340237512965193!GO:0006611;protein export from nucleus;0.0340744206433382!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0340744206433382!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0341810934294077!GO:0005832;chaperonin-containing T-complex;0.0341833006588642!GO:0001726;ruffle;0.0343918824792903!GO:0030134;ER to Golgi transport vesicle;0.0343918824792903!GO:0048500;signal recognition particle;0.0348343118397542!GO:0048488;synaptic vesicle endocytosis;0.0351345847015535!GO:0030521;androgen receptor signaling pathway;0.0351739292420971!GO:0030127;COPII vesicle coat;0.0354185578117027!GO:0012507;ER to Golgi transport vesicle membrane;0.0354185578117027!GO:0043066;negative regulation of apoptosis;0.035420470693076!GO:0050811;GABA receptor binding;0.0359945854849921!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0362333704428969!GO:0055083;monovalent inorganic anion homeostasis;0.0362333704428969!GO:0055064;chloride ion homeostasis;0.0362333704428969!GO:0030644;cellular chloride ion homeostasis;0.0362333704428969!GO:0042734;presynaptic membrane;0.0366112207344093!GO:0032011;ARF protein signal transduction;0.0367809645765397!GO:0032012;regulation of ARF protein signal transduction;0.0367809645765397!GO:0007266;Rho protein signal transduction;0.0370388045742328!GO:0042585;germinal vesicle;0.0371892731582601!GO:0050803;regulation of synapse structure and activity;0.0372879575666743!GO:0007242;intracellular signaling cascade;0.0376253927054016!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0380115539460625!GO:0016779;nucleotidyltransferase activity;0.0387991545613217!GO:0030384;phosphoinositide metabolic process;0.0390497639279966!GO:0001505;regulation of neurotransmitter levels;0.0391025408922211!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0391889470775492!GO:0045047;protein targeting to ER;0.0391889470775492!GO:0007021;tubulin folding;0.0394436954879271!GO:0006818;hydrogen transport;0.0395955175830078!GO:0031902;late endosome membrane;0.0399873838042437!GO:0009117;nucleotide metabolic process;0.0407414831641969!GO:0030125;clathrin vesicle coat;0.0412365214531085!GO:0030665;clathrin coated vesicle membrane;0.0412365214531085!GO:0005085;guanyl-nucleotide exchange factor activity;0.0413675801188815!GO:0008361;regulation of cell size;0.0424987234994883!GO:0044433;cytoplasmic vesicle part;0.0425971450803247!GO:0000087;M phase of mitotic cell cycle;0.042860890522108!GO:0030131;clathrin adaptor complex;0.0429778671038936!GO:0006376;mRNA splice site selection;0.0438359303818448!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0438359303818448!GO:0005741;mitochondrial outer membrane;0.0439760521754546!GO:0032535;regulation of cellular component size;0.0440118974563708!GO:0043488;regulation of mRNA stability;0.0442607809118195!GO:0043487;regulation of RNA stability;0.0442607809118195!GO:0031114;regulation of microtubule depolymerization;0.0449502009844522!GO:0007026;negative regulation of microtubule depolymerization;0.0449502009844522!GO:0001578;microtubule bundle formation;0.0450283716397009!GO:0043414;biopolymer methylation;0.0451112729618537!GO:0030742;GTP-dependent protein binding;0.0459354022721993!GO:0022403;cell cycle phase;0.0465688802186599!GO:0050839;cell adhesion molecule binding;0.0470600497578417!GO:0016570;histone modification;0.04821333461672!GO:0007018;microtubule-based movement;0.0486789930979188!GO:0016859;cis-trans isomerase activity;0.0486994006731097!GO:0031371;ubiquitin conjugating enzyme complex;0.0488134302685501!GO:0008276;protein methyltransferase activity;0.0489808986405288!GO:0008047;enzyme activator activity;0.0493039789745067!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.049572408466883
|sample_id=10071
|sample_id=10071
|sample_note=CNhs12997 is tech_rep2
|sample_note=CNhs12997 is tech_rep2
Line 76: Line 99:
|sample_tissue=duodenum
|sample_tissue=duodenum
|top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981
|top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10071-101I8;search_select_hide=table117:FF:10071-101I8
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:duodenum, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11781,CNhs12997
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueduodenum
dev stage36 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA706076
catalog numberCat:RtHFN: Small Intestine: Duodenum
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005706
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11781 CAGE DRX008645 DRR009517
CNhs12997 CAGE DRX008646 DRR009518
Accession ID Hg19

Library idBAMCTSS
CNhs11781 DRZ000942 DRZ002327
CNhs12997 DRZ000943 DRZ002328
Accession ID Hg38

Library idBAMCTSS
CNhs11781 DRZ012292 DRZ013677
CNhs12997 DRZ012293 DRZ013678
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
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Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.209
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.108
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0.534
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.344
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.848
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.336
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.344
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.344
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0856
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.169
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.344
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.534
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.534
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0.666
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0442
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.344
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0.344
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.208
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0.534
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.165
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.344
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.666
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.295
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.344
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.344
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.32
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.534
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



No results for this sample



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11781

Jaspar motifP-value
MA0002.20.191
MA0003.10.338
MA0004.10.0588
MA0006.10.154
MA0007.11
MA0009.10.51
MA0014.10.576
MA0017.12.35264e-6
MA0018.20.233
MA0019.10.596
MA0024.10.143
MA0025.10.357
MA0027.10.605
MA0028.11.04388e-8
MA0029.10.926
MA0030.10.641
MA0031.10.984
MA0035.20.0672
MA0038.10.27
MA0039.20.708
MA0040.10.848
MA0041.10.504
MA0042.10.61
MA0043.10.0174
MA0046.19.67734e-36
MA0047.20.143
MA0048.10.117
MA0050.10.93
MA0051.10.525
MA0052.10.354
MA0055.10.0164
MA0057.10.693
MA0058.10.00408
MA0059.10.00774
MA0060.10.0068
MA0061.19.22595e-6
MA0062.21.62736e-11
MA0065.20.504
MA0066.10.847
MA0067.10.0601
MA0068.10.966
MA0069.10.876
MA0070.10.379
MA0071.10.339
MA0072.10.118
MA0073.10.312
MA0074.10.744
MA0076.11.21887e-9
MA0077.10.648
MA0078.10.808
MA0079.20.916
MA0080.20.0187
MA0081.10.00432
MA0083.10.0786
MA0084.10.55
MA0087.10.135
MA0088.10.196
MA0090.10.619
MA0091.10.812
MA0092.10.964
MA0093.10.0495
MA0099.25.25888e-21
MA0100.10.0663
MA0101.11.63389e-5
MA0102.20.0996
MA0103.16.51481e-4
MA0104.23.79441e-4
MA0105.11.22804e-7
MA0106.10.023
MA0107.16.15476e-5
MA0108.24.94024e-7
MA0111.10.247
MA0112.20.529
MA0113.10.775
MA0114.13.01239e-5
MA0115.10.329
MA0116.10.0207
MA0117.10.118
MA0119.10.672
MA0122.10.974
MA0124.10.427
MA0125.10.485
MA0131.10.87
MA0135.10.463
MA0136.15.60165e-6
MA0137.20.787
MA0138.20.0195
MA0139.10.154
MA0140.10.781
MA0141.10.35
MA0142.10.0795
MA0143.10.203
MA0144.10.461
MA0145.10.625
MA0146.10.725
MA0147.10.0012
MA0148.10.257
MA0149.10.0392
MA0150.16.44763e-8
MA0152.10.0583
MA0153.18.23369e-20
MA0154.10.17
MA0155.10.65
MA0156.15.00674e-6
MA0157.10.158
MA0159.10.535
MA0160.10.406
MA0162.10.898
MA0163.10.024
MA0164.10.326
MA0258.10.185
MA0259.10.048


library id: CNhs12997This sample isn't target for the analysis



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11781

Novel motifP-value
10.38
100.229
1000.684
1010.185
1020.577
1030.124
1040.879
1050.884
1060.104
1070.033
1080.587
1090.0941
110.935
1100.538
1110.797
1120.352
1133.09125e-5
1140.256
1150.442
1160.22
1170.00534
1180.692
1190.0755
120.42
1200.554
1210.222
1220.1
1232.29302e-4
1240.95
1250.552
1260.322
1270.0975
1280.0136
1290.969
130.165
1300.522
1310.409
1320.00249
1330.0922
1340.768
1350.196
1360.244
1370.144
1380.94
1390.638
140.886
1400.266
1410.963
1420.772
1430.0158
1440.818
1450.0854
1460.418
1470.659
1480.759
1490.376
150.204
1500.654
1510.468
1520.585
1530.534
1540.267
1550.668
1560.452
1570.526
1580.881
1590.773
160.815
1600.74
1610.855
1620.25
1630.105
1640.73
1650.844
1660.288
1670.813
1680.649
1690.36
170.6
180.011
190.11
20.00642
200.0689
210.536
220.498
230.266
240.458
250.564
260.659
270.429
280.993
290.0273
30.936
300.0921
310.492
321.1628e-5
330.262
340.435
350.378
360.0934
370.0989
380.525
390.497
40.638
400.556
410.0203
420.664
430.92
440.908
450.652
460.618
470.497
480.851
490.596
50.451
500.563
510.672
520.077
530.0335
540.588
550.306
560.924
570.846
580.654
590.714
60.962
600.228
610.509
620.922
630.842
640.823
650.466
660.0198
670.264
680.381
690.953
70.921
700.684
710.415
720.375
730.0784
740.0674
750.00105
760.201
770.108
780.245
790.666
80.819
800.587
810.9
820.537
830.914
840.421
850.103
860.0394
870.00642
880.786
890.458
90.9
900.166
910.156
920.0701
930.394
940.0886
950.0368
960.721
970.953
980.428
990.0762


library id: CNhs12997

Novel motifP-value
10.0486
100.081
1000.436
1010.944
1020.911
1030.141
1040.115
1050.0772
1060.0276
1070.0926
1080.953
1095.8364e-4
110.0217
1100.13
1110.233
1120.28
1130.463
1140.0483
1150.55
1160.376
1170.0182
1180.238
1190.185
120.572
1200.248
1210.468
1220.794
1230.418
1240.229
1250.359
1260.0141
1270.209
1280.162
1290.433
130.00364
1300.0736
1310.762
1320.744
1330.268
1340.698
1350.83
1360.00654
1370.504
1380.791
1390.089
140.583
1400.431
1410.431
1420.972
1430.0166
1440.902
1450.219
1460.464
1470.962
1480.0348
1490.141
150.0928
1500.234
1510.445
1520.0362
1530.991
1540.542
1550.684
1560.336
1570.402
1580.787
1590.115
160.0475
1600.274
1610.24
1620.53
1630.495
1640.061
1650.23
1660.736
1670.599
1680.0753
1690.00899
170.0717
180.262
190.134
20.605
200.34
210.151
220.103
230.182
240.0457
250.477
260.0105
270.555
280.611
290.0523
30.0406
300.801
310.65
320.0584
330.147
340.533
350.648
360.128
370.0148
380.24
390.236
40.995
400.0298
410.219
420.178
430.109
440.198
450.6
460.222
470.0598
480.0615
490.144
50.266
500.333
510.415
520.35
530.821
540.326
550.729
560.436
570.463
580.211
590.0464
60.997
600.0421
610.04
620.159
630.14
640.416
650.212
660.353
670.468
680.257
690.536
70.0563
700.0292
710.02
720.177
730.0107
740.733
750.0401
760.468
770.102
780.00489
790.489
80.108
800.148
810.644
820.429
830.00226
840.941
850.0676
860.244
870.00102
880.749
890.255
90.315
900.199
910.912
920.282
930.824
940.128
950.00489
960.308
970.775
980.234
990.696



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11781
library id: CNhs12997


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010071 (human temporal lobe - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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