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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=
+
|DRA_sample_Accession=CAGE@SAMD00004969
 +
|accession_numbers=CAGE;DRX008676;DRR009548;DRZ000973;DRZ002358;DRZ012323;DRZ013708
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0002148,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0002020,UBERON:0010317,UBERON:0002308,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011487
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
|
+
|expression_enrichment_score=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
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|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%2520-%2520adult%252c%2520donor10196.CNhs13808.10182-103D2.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10182-103D2
 
|id=FF:10182-103D2
|is_a=FF:0000004;;FF:0000210;;FF:0011487
+
|is_a=FF:0011487
 +
|is_obsolete=
 +
|library_id=CNhs13808
 +
|library_id_phase_based=2:CNhs13808
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10182
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10182
 
|name=locus coeruleus - adult, donor10196
 
|name=locus coeruleus - adult, donor10196
 
|namespace=
 
|namespace=
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|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=
 
|profile_srnaseq=
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0.0510992149266993,0,0,0,0,0.279890578803657,0,-0.0604420650432133,0.279890578803657,0.30369628120658,0.337458428802615,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.252426345670604,0,0.344142651279912,0,0.00191806877511531,0,0,0.295288130477845,0,0,0,0,0,0,0,0,0,0,0,0,-0.0930969433406258,0.14234217584783,0.0998759650431728,0,0,0,0,0,0,0.167882136166418,0.0528027736253869,0.108332157823766,0,0.652308223244803,0,0.229350604714617,0.216539256609758,0.472959686201976,0,0,0.152025414287443,0.0528027736253869,0,0,0,0,0,0,0,0,0,0,0,0.0404988076780624,0.0998759650431728,0,0,0.0998759650431728,0.0998759650431728,0.151085907562963,0.0528027736253869,0.0137349752539615,0.058753167501454,0,0.207697362506216,0.40106476686303,0.397325199546317,0,0.308407239003328,0.294647181058133,0.35206210194659,0.0905116594034115,0.181023318806823,0,0.0998759650431728,0.0443068246101236,0.347223430366891,0,0,0,0,0,0,0,0,0,0,0,0.0528027736253869,0,0,0,0,0,0.0838122925065435,0.14234217584783,0,0,0.0918196923156134,0.075650958717641,0.0528027736253869,0,0.137400605412706,0.121109070445501,0,0
 +
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|rna_box=103
 
|rna_box=103
 
|rna_catalog_number=
 
|rna_catalog_number=
Line 57: Line 79:
 
|rna_weight_ug=56.1675
 
|rna_weight_ug=56.1675
 
|sample_age=60
 
|sample_age=60
 +
|sample_category=tissues
 
|sample_cell_catalog=NA
 
|sample_cell_catalog=NA
 
|sample_cell_line=
 
|sample_cell_line=
Line 69: Line 92:
 
|sample_ethnicity=
 
|sample_ethnicity=
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.2984794918556e-272!GO:0005737;cytoplasm;8.40459757877851e-159!GO:0044444;cytoplasmic part;3.76835726670946e-104!GO:0043226;organelle;4.16390288020146e-101!GO:0043229;intracellular organelle;1.47127063549509e-100!GO:0043227;membrane-bound organelle;5.59890305261127e-92!GO:0043231;intracellular membrane-bound organelle;8.74469971118905e-92!GO:0005515;protein binding;1.58133392291789e-65!GO:0044422;organelle part;1.33376307626583e-64!GO:0044446;intracellular organelle part;1.51853172068648e-63!GO:0032991;macromolecular complex;1.48071013509029e-57!GO:0016043;cellular component organization and biogenesis;1.19288700804972e-46!GO:0005739;mitochondrion;1.67657409593632e-44!GO:0030529;ribonucleoprotein complex;1.12252785780219e-43!GO:0003723;RNA binding;2.92510151179676e-39!GO:0033036;macromolecule localization;3.9429369000193e-37!GO:0015031;protein transport;1.06483805261816e-35!GO:0031090;organelle membrane;6.69504415124304e-35!GO:0008104;protein localization;5.93751726093243e-34!GO:0045184;establishment of protein localization;3.39621945911189e-33!GO:0044429;mitochondrial part;3.63138739378131e-32!GO:0043234;protein complex;1.10899699325112e-30!GO:0046907;intracellular transport;1.3352312462401e-30!GO:0043233;organelle lumen;1.05607428970225e-29!GO:0031974;membrane-enclosed lumen;1.05607428970225e-29!GO:0044238;primary metabolic process;2.86923711083114e-28!GO:0031975;envelope;3.32468664094052e-28!GO:0031967;organelle envelope;4.68234607498936e-28!GO:0044428;nuclear part;6.49346223782601e-28!GO:0044237;cellular metabolic process;6.34915854677647e-27!GO:0005829;cytosol;8.30368260606122e-27!GO:0051649;establishment of cellular localization;1.44351726625304e-26!GO:0051641;cellular localization;1.90010889354157e-26!GO:0016071;mRNA metabolic process;7.21807176374968e-26!GO:0016192;vesicle-mediated transport;5.81543472989684e-25!GO:0005840;ribosome;4.09099181241396e-24!GO:0019538;protein metabolic process;1.31731585784744e-23!GO:0008380;RNA splicing;2.20322389275539e-23!GO:0043170;macromolecule metabolic process;2.55483927355458e-23!GO:0005740;mitochondrial envelope;3.05242623495495e-22!GO:0006396;RNA processing;4.03621201839628e-22!GO:0006886;intracellular protein transport;4.91324593852818e-22!GO:0031966;mitochondrial membrane;8.95720133434436e-22!GO:0006412;translation;1.19225453451241e-21!GO:0006397;mRNA processing;2.40708115992965e-21!GO:0005634;nucleus;2.7656138030846e-21!GO:0044260;cellular macromolecule metabolic process;4.25216796130001e-21!GO:0006119;oxidative phosphorylation;1.00934855696937e-20!GO:0009058;biosynthetic process;1.6795712156977e-20!GO:0019866;organelle inner membrane;3.54036952179971e-20!GO:0044267;cellular protein metabolic process;4.78254501016078e-20!GO:0003735;structural constituent of ribosome;1.1429328677795e-19!GO:0005743;mitochondrial inner membrane;3.34381767560512e-19!GO:0006996;organelle organization and biogenesis;1.18513136854841e-18!GO:0031982;vesicle;1.0173447410894e-17!GO:0005794;Golgi apparatus;1.52913030590777e-17!GO:0033279;ribosomal subunit;1.62039444555711e-17!GO:0000166;nucleotide binding;1.62314212347286e-17!GO:0044249;cellular biosynthetic process;2.1803705052125e-17!GO:0065003;macromolecular complex assembly;6.18295183855135e-17!GO:0031410;cytoplasmic vesicle;6.45977612569571e-17!GO:0005681;spliceosome;2.28978483280175e-16!GO:0044455;mitochondrial membrane part;3.68912628730128e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.51499348874766e-16!GO:0009059;macromolecule biosynthetic process;5.18169359228203e-16!GO:0016462;pyrophosphatase activity;5.91646257250599e-16!GO:0031988;membrane-bound vesicle;5.93436739801571e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.64637046225435e-16!GO:0031981;nuclear lumen;7.29066942293384e-16!GO:0016023;cytoplasmic membrane-bound vesicle;3.2648195591548e-15!GO:0022607;cellular component assembly;3.57932473517029e-15!GO:0017111;nucleoside-triphosphatase activity;3.83772171734917e-15!GO:0005746;mitochondrial respiratory chain;8.09122238606351e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.36960341471051e-15!GO:0003954;NADH dehydrogenase activity;8.36960341471051e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.36960341471051e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.14912651369503e-14!GO:0012505;endomembrane system;6.68225154760554e-13!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.20827816854686e-12!GO:0044445;cytosolic part;1.21397089364768e-12!GO:0006457;protein folding;1.21397089364768e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.21397089364768e-12!GO:0045271;respiratory chain complex I;1.21397089364768e-12!GO:0005747;mitochondrial respiratory chain complex I;1.21397089364768e-12!GO:0048770;pigment granule;1.21397089364768e-12!GO:0042470;melanosome;1.21397089364768e-12!GO:0031980;mitochondrial lumen;1.42885480346847e-12!GO:0005759;mitochondrial matrix;1.42885480346847e-12!GO:0032553;ribonucleotide binding;1.72303725434432e-12!GO:0032555;purine ribonucleotide binding;1.72303725434432e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.29789815538478e-12!GO:0042773;ATP synthesis coupled electron transport;3.29789815538478e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.62531926753626e-12!GO:0043283;biopolymer metabolic process;3.6307504123872e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.44544325755354e-12!GO:0016874;ligase activity;6.64994894178895e-12!GO:0017076;purine nucleotide binding;1.02076214447669e-11!GO:0043228;non-membrane-bound organelle;1.06598237043906e-11!GO:0043232;intracellular non-membrane-bound organelle;1.06598237043906e-11!GO:0003924;GTPase activity;1.34381078592905e-11!GO:0010467;gene expression;1.36576173197195e-11!GO:0022618;protein-RNA complex assembly;1.98892667388569e-11!GO:0048193;Golgi vesicle transport;6.4952540528694e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.13214599052709e-11!GO:0006512;ubiquitin cycle;1.44640813547785e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.80560609031886e-10!GO:0005654;nucleoplasm;1.81672685357718e-10!GO:0006605;protein targeting;2.72859086633661e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.7885735687607e-10!GO:0016044;membrane organization and biogenesis;2.87019952209203e-10!GO:0019941;modification-dependent protein catabolic process;3.04378029792788e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.04378029792788e-10!GO:0044257;cellular protein catabolic process;3.62062535048548e-10!GO:0051082;unfolded protein binding;5.59299553494439e-10!GO:0007264;small GTPase mediated signal transduction;5.994961603915e-10!GO:0008135;translation factor activity, nucleic acid binding;6.44678711447219e-10!GO:0008134;transcription factor binding;7.00328440494255e-10!GO:0015935;small ribosomal subunit;8.81901518244237e-10!GO:0045045;secretory pathway;1.07952455546623e-09!GO:0008092;cytoskeletal protein binding;1.10898263109469e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16212022494835e-09!GO:0044451;nucleoplasm part;1.34159217560923e-09!GO:0044265;cellular macromolecule catabolic process;1.41982711431109e-09!GO:0008565;protein transporter activity;1.68946253903777e-09!GO:0005768;endosome;1.86005554173455e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.9220970333044e-09!GO:0005525;GTP binding;2.14767124898535e-09!GO:0007010;cytoskeleton organization and biogenesis;2.79333470984396e-09!GO:0019829;cation-transporting ATPase activity;3.21204755022814e-09!GO:0043412;biopolymer modification;5.02981257070139e-09!GO:0051186;cofactor metabolic process;8.14839405773702e-09!GO:0030695;GTPase regulator activity;8.42485656717869e-09!GO:0043687;post-translational protein modification;9.64456715712675e-09!GO:0006464;protein modification process;1.03802160157248e-08!GO:0006810;transport;1.49132546365407e-08!GO:0015934;large ribosomal subunit;1.50350343236587e-08!GO:0044248;cellular catabolic process;2.3311795496886e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.47130052470707e-08!GO:0005783;endoplasmic reticulum;2.68072655230642e-08!GO:0015630;microtubule cytoskeleton;2.70571562528296e-08!GO:0051179;localization;3.49519770387388e-08!GO:0006793;phosphorus metabolic process;4.2775865597784e-08!GO:0006796;phosphate metabolic process;4.2775865597784e-08!GO:0032561;guanyl ribonucleotide binding;4.61659785372667e-08!GO:0019001;guanyl nucleotide binding;4.61659785372667e-08!GO:0048523;negative regulation of cellular process;5.45363548755258e-08!GO:0030135;coated vesicle;6.00753941108671e-08!GO:0043285;biopolymer catabolic process;6.58141521218016e-08!GO:0015986;ATP synthesis coupled proton transport;1.00720832639316e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.00720832639316e-07!GO:0030163;protein catabolic process;1.11227745227392e-07!GO:0016604;nuclear body;1.27612882390016e-07!GO:0006446;regulation of translational initiation;1.27612882390016e-07!GO:0006413;translational initiation;1.34980494513748e-07!GO:0005083;small GTPase regulator activity;1.67594967802267e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.69475821907796e-07!GO:0000375;RNA splicing, via transesterification reactions;1.69475821907796e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.69475821907796e-07!GO:0006913;nucleocytoplasmic transport;1.9480369149888e-07!GO:0003743;translation initiation factor activity;2.60407322111288e-07!GO:0006461;protein complex assembly;2.65938778884318e-07!GO:0016607;nuclear speck;2.77263474923494e-07!GO:0005761;mitochondrial ribosome;3.3188481655318e-07!GO:0000313;organellar ribosome;3.3188481655318e-07!GO:0044431;Golgi apparatus part;3.3188481655318e-07!GO:0051169;nuclear transport;3.51862267500916e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.10776146254682e-07!GO:0006897;endocytosis;4.10776146254682e-07!GO:0010324;membrane invagination;4.10776146254682e-07!GO:0009060;aerobic respiration;4.88433273702648e-07!GO:0005635;nuclear envelope;7.31809207835568e-07!GO:0051234;establishment of localization;7.48804955986702e-07!GO:0015631;tubulin binding;7.77574487705775e-07!GO:0031965;nuclear membrane;8.17144703817758e-07!GO:0009057;macromolecule catabolic process;8.23841144336623e-07!GO:0032559;adenyl ribonucleotide binding;8.40494640110856e-07!GO:0032940;secretion by cell;8.40494640110856e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.07834376377581e-07!GO:0048471;perinuclear region of cytoplasm;9.70222847906779e-07!GO:0005874;microtubule;1.18265421294577e-06!GO:0045333;cellular respiration;1.35964468301643e-06!GO:0008639;small protein conjugating enzyme activity;1.65709807810562e-06!GO:0048519;negative regulation of biological process;1.6712053448726e-06!GO:0006732;coenzyme metabolic process;1.73089582906371e-06!GO:0046034;ATP metabolic process;2.27370210016943e-06!GO:0048475;coated membrane;2.34838271901085e-06!GO:0030117;membrane coat;2.34838271901085e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.3799299688117e-06!GO:0004842;ubiquitin-protein ligase activity;2.3799299688117e-06!GO:0019787;small conjugating protein ligase activity;2.38729840485002e-06!GO:0005524;ATP binding;2.41034960694248e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.42571666205542e-06!GO:0031252;leading edge;2.98985539590142e-06!GO:0006754;ATP biosynthetic process;3.47597270847279e-06!GO:0006753;nucleoside phosphate metabolic process;3.47597270847279e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.59633516775808e-06!GO:0030554;adenyl nucleotide binding;3.6391534763475e-06!GO:0017038;protein import;3.81136636560399e-06!GO:0005905;coated pit;4.01291535685876e-06!GO:0030029;actin filament-based process;4.43483169156344e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.44661620725358e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.44661620725358e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.44661620725358e-06!GO:0009141;nucleoside triphosphate metabolic process;4.68353701155111e-06!GO:0009055;electron carrier activity;4.94302700222346e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.65346621369291e-06!GO:0009150;purine ribonucleotide metabolic process;5.74519383964467e-06!GO:0016310;phosphorylation;5.85133254872331e-06!GO:0006163;purine nucleotide metabolic process;5.9766273606839e-06!GO:0005730;nucleolus;6.2934669693504e-06!GO:0006099;tricarboxylic acid cycle;7.27612924160679e-06!GO:0046356;acetyl-CoA catabolic process;7.27612924160679e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.9608016489202e-06!GO:0006164;purine nucleotide biosynthetic process;8.82528098203003e-06!GO:0008287;protein serine/threonine phosphatase complex;9.225470024687e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.64658855587974e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.64658855587974e-06!GO:0019899;enzyme binding;1.01084366944055e-05!GO:0009109;coenzyme catabolic process;1.18250567424847e-05!GO:0043005;neuron projection;1.19303780135429e-05!GO:0000902;cell morphogenesis;1.19506043449552e-05!GO:0032989;cellular structure morphogenesis;1.19506043449552e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.23356166532294e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.23356166532294e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.23356166532294e-05!GO:0051246;regulation of protein metabolic process;1.30466239647932e-05!GO:0045259;proton-transporting ATP synthase complex;1.30466239647932e-05!GO:0016881;acid-amino acid ligase activity;1.3259217750066e-05!GO:0009259;ribonucleotide metabolic process;1.33756131682124e-05!GO:0044440;endosomal part;1.42632979406708e-05!GO:0010008;endosome membrane;1.42632979406708e-05!GO:0000139;Golgi membrane;1.57585124638504e-05!GO:0016887;ATPase activity;1.67932184254646e-05!GO:0005769;early endosome;1.6908104289937e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.88644174582987e-05!GO:0007399;nervous system development;2.40551165469078e-05!GO:0012501;programmed cell death;2.60051330472001e-05!GO:0051187;cofactor catabolic process;2.62919808587024e-05!GO:0008017;microtubule binding;3.04576791197486e-05!GO:0030136;clathrin-coated vesicle;3.16883194249526e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.30101089360652e-05!GO:0003712;transcription cofactor activity;3.38102084102703e-05!GO:0008219;cell death;3.44344747806817e-05!GO:0016265;death;3.44344747806817e-05!GO:0006915;apoptosis;3.44927783210229e-05!GO:0006084;acetyl-CoA metabolic process;3.58190143529601e-05!GO:0042623;ATPase activity, coupled;3.84619748215431e-05!GO:0003779;actin binding;3.9685878358828e-05!GO:0007242;intracellular signaling cascade;3.9685878358828e-05!GO:0009260;ribonucleotide biosynthetic process;4.23173645062598e-05!GO:0044432;endoplasmic reticulum part;4.38862691170541e-05!GO:0005770;late endosome;4.99849809276508e-05!GO:0016564;transcription repressor activity;5.0296848228257e-05!GO:0008047;enzyme activator activity;5.25017582967709e-05!GO:0005096;GTPase activator activity;7.49424257947037e-05!GO:0045786;negative regulation of progression through cell cycle;8.94394739663991e-05!GO:0000245;spliceosome assembly;9.78881742885961e-05!GO:0030120;vesicle coat;9.97881764697512e-05!GO:0030662;coated vesicle membrane;9.97881764697512e-05!GO:0044453;nuclear membrane part;0.000101165456205788!GO:0007265;Ras protein signal transduction;0.000104875636048081!GO:0006606;protein import into nucleus;0.000128537778100035!GO:0009056;catabolic process;0.000130032920440151!GO:0019717;synaptosome;0.000141767283027374!GO:0051170;nuclear import;0.000144194523000329!GO:0005643;nuclear pore;0.000174774688495941!GO:0051188;cofactor biosynthetic process;0.000186873816534813!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000192602832367687!GO:0015399;primary active transmembrane transporter activity;0.000192602832367687!GO:0051128;regulation of cellular component organization and biogenesis;0.00021059872137924!GO:0043069;negative regulation of programmed cell death;0.000232669809292752!GO:0000159;protein phosphatase type 2A complex;0.000242909049806469!GO:0031072;heat shock protein binding;0.000293352893617499!GO:0003714;transcription corepressor activity;0.000317225983673195!GO:0043066;negative regulation of apoptosis;0.000327305755775298!GO:0032446;protein modification by small protein conjugation;0.000333547909447265!GO:0005875;microtubule associated complex;0.00035334326628231!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000359421434378358!GO:0003729;mRNA binding;0.000360045110556998!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000360060884593337!GO:0006366;transcription from RNA polymerase II promoter;0.000373319879338689!GO:0006752;group transfer coenzyme metabolic process;0.000373319879338689!GO:0006403;RNA localization;0.000381955443662582!GO:0030118;clathrin coat;0.000385602406610187!GO:0016070;RNA metabolic process;0.000385602406610187!GO:0005789;endoplasmic reticulum membrane;0.000389814564913523!GO:0016197;endosome transport;0.000394520092655655!GO:0005741;mitochondrial outer membrane;0.000437633015976739!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000449568560324149!GO:0004812;aminoacyl-tRNA ligase activity;0.000449568560324149!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000449568560324149!GO:0048468;cell development;0.000454233613819624!GO:0006607;NLS-bearing substrate import into nucleus;0.000457974435361329!GO:0015980;energy derivation by oxidation of organic compounds;0.00046021022736722!GO:0043492;ATPase activity, coupled to movement of substances;0.000461306424102146!GO:0050657;nucleic acid transport;0.000461306424102146!GO:0051236;establishment of RNA localization;0.000461306424102146!GO:0050658;RNA transport;0.000461306424102146!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000472443696711488!GO:0031901;early endosome membrane;0.000473447600835625!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000474520483199246!GO:0005798;Golgi-associated vesicle;0.000477871208771546!GO:0016126;sterol biosynthetic process;0.000491805978592105!GO:0006613;cotranslational protein targeting to membrane;0.00050468904902636!GO:0030133;transport vesicle;0.000517714298490587!GO:0016567;protein ubiquitination;0.000541907278413759!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000543594039756408!GO:0006888;ER to Golgi vesicle-mediated transport;0.000555158245901658!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000602335391420959!GO:0043038;amino acid activation;0.000631556248098675!GO:0006418;tRNA aminoacylation for protein translation;0.000631556248098675!GO:0043039;tRNA aminoacylation;0.000631556248098675!GO:0022890;inorganic cation transmembrane transporter activity;0.000640776438765706!GO:0006916;anti-apoptosis;0.000677562496839046!GO:0005793;ER-Golgi intermediate compartment;0.00069105167490617!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000787364904422401!GO:0030532;small nuclear ribonucleoprotein complex;0.000857244353502275!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000926588504020797!GO:0050789;regulation of biological process;0.000942823991424287!GO:0008601;protein phosphatase type 2A regulator activity;0.000942823991424287!GO:0005773;vacuole;0.000957800521144589!GO:0030027;lamellipodium;0.000960729795005666!GO:0051087;chaperone binding;0.00101978419318024!GO:0008361;regulation of cell size;0.00113529257093118!GO:0000151;ubiquitin ligase complex;0.0012290038707964!GO:0008654;phospholipid biosynthetic process;0.00126548262102585!GO:0006892;post-Golgi vesicle-mediated transport;0.0012919618197387!GO:0006323;DNA packaging;0.00130080014186558!GO:0031968;organelle outer membrane;0.00137408854352647!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137408854352647!GO:0019867;outer membrane;0.00141718432998972!GO:0016791;phosphoric monoester hydrolase activity;0.00143347211987732!GO:0030867;rough endoplasmic reticulum membrane;0.00144240941742814!GO:0043566;structure-specific DNA binding;0.00152063107267977!GO:0004721;phosphoprotein phosphatase activity;0.00158955610981065!GO:0050794;regulation of cellular process;0.00160303367709528!GO:0005791;rough endoplasmic reticulum;0.00174948207819969!GO:0016050;vesicle organization and biogenesis;0.00181096762968038!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00184934526525257!GO:0016049;cell growth;0.00187905522479357!GO:0009108;coenzyme biosynthetic process;0.00191951785936946!GO:0051056;regulation of small GTPase mediated signal transduction;0.00191951785936946!GO:0005938;cell cortex;0.00194342792214396!GO:0006414;translational elongation;0.00195055424673621!GO:0050767;regulation of neurogenesis;0.00195055424673621!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00199944202455783!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00199944202455783!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00199944202455783!GO:0003724;RNA helicase activity;0.00205823128064756!GO:0019208;phosphatase regulator activity;0.00216043604362355!GO:0016568;chromatin modification;0.00218369986185366!GO:0009117;nucleotide metabolic process;0.00222190434386213!GO:0009966;regulation of signal transduction;0.00224400284352792!GO:0046467;membrane lipid biosynthetic process;0.00225810793884888!GO:0007019;microtubule depolymerization;0.00229454017663585!GO:0009892;negative regulation of metabolic process;0.00230727174961533!GO:0006259;DNA metabolic process;0.00242737160040875!GO:0016311;dephosphorylation;0.00264632928153755!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00270112341545071!GO:0008026;ATP-dependent helicase activity;0.00284014986619377!GO:0030425;dendrite;0.00287437115209556!GO:0007017;microtubule-based process;0.0030009744112294!GO:0022406;membrane docking;0.00308277802209812!GO:0048278;vesicle docking;0.00308277802209812!GO:0005839;proteasome core complex (sensu Eukaryota);0.00310742451309235!GO:0006650;glycerophospholipid metabolic process;0.00312864123489878!GO:0043623;cellular protein complex assembly;0.00315109876986727!GO:0001726;ruffle;0.00319359269117408!GO:0008139;nuclear localization sequence binding;0.00323997974294941!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00361553655866649!GO:0006402;mRNA catabolic process;0.00389217472546279!GO:0003697;single-stranded DNA binding;0.00407103168778415!GO:0043209;myelin sheath;0.00411738381395022!GO:0030132;clathrin coat of coated pit;0.00416418757860339!GO:0051028;mRNA transport;0.00416418757860339!GO:0001508;regulation of action potential;0.00424636742152961!GO:0051726;regulation of cell cycle;0.00435992140056782!GO:0005813;centrosome;0.00450924374973314!GO:0000323;lytic vacuole;0.00457570023287379!GO:0005764;lysosome;0.00457570023287379!GO:0007243;protein kinase cascade;0.00460654883708307!GO:0001505;regulation of neurotransmitter levels;0.00460654883708307!GO:0004386;helicase activity;0.00472805011690912!GO:0007272;ensheathment of neurons;0.00476814892758361!GO:0008366;axon ensheathment;0.00476814892758361!GO:0050811;GABA receptor binding;0.00495726627476983!GO:0044448;cell cortex part;0.00496680064568792!GO:0048487;beta-tubulin binding;0.00496680064568792!GO:0006904;vesicle docking during exocytosis;0.0050824261288065!GO:0005085;guanyl-nucleotide exchange factor activity;0.00509984122534015!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00513361925232613!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0051816645271035!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00545000188102468!GO:0030426;growth cone;0.0055626871858441!GO:0019904;protein domain specific binding;0.00564810548213089!GO:0005100;Rho GTPase activator activity;0.00583391781050893!GO:0004722;protein serine/threonine phosphatase activity;0.0059635750423743!GO:0003676;nucleic acid binding;0.00650940483551209!GO:0000074;regulation of progression through cell cycle;0.00669741966142836!GO:0031114;regulation of microtubule depolymerization;0.00674571139752201!GO:0007026;negative regulation of microtubule depolymerization;0.00674571139752201!GO:0030424;axon;0.00679992916946564!GO:0030427;site of polarized growth;0.00686120727575483!GO:0006470;protein amino acid dephosphorylation;0.00686198480037541!GO:0016481;negative regulation of transcription;0.0069255739202685!GO:0008286;insulin receptor signaling pathway;0.00695767063013138!GO:0031324;negative regulation of cellular metabolic process;0.00696993316601636!GO:0051920;peroxiredoxin activity;0.00697599379591471!GO:0019888;protein phosphatase regulator activity;0.00702005050388432!GO:0043284;biopolymer biosynthetic process;0.00720904920000044!GO:0016301;kinase activity;0.00726254323827219!GO:0012506;vesicle membrane;0.00739017607632091!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00739017607632091!GO:0004667;prostaglandin-D synthase activity;0.00739017607632091!GO:0050802;circadian sleep/wake cycle, sleep;0.00739017607632091!GO:0022410;circadian sleep/wake cycle process;0.00739017607632091!GO:0042749;regulation of circadian sleep/wake cycle;0.00739017607632091!GO:0008154;actin polymerization and/or depolymerization;0.007401078966598!GO:0005762;mitochondrial large ribosomal subunit;0.00741342370726495!GO:0000315;organellar large ribosomal subunit;0.00741342370726495!GO:0051540;metal cluster binding;0.00744666620260304!GO:0051536;iron-sulfur cluster binding;0.00744666620260304!GO:0008610;lipid biosynthetic process;0.00767975087579276!GO:0006695;cholesterol biosynthetic process;0.00769113600253015!GO:0043021;ribonucleoprotein binding;0.00771702341655647!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00787545011848405!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00845023506908191!GO:0006643;membrane lipid metabolic process;0.0084729041552478!GO:0007266;Rho protein signal transduction;0.00867057486568727!GO:0005869;dynactin complex;0.00884534509880629!GO:0007049;cell cycle;0.00898548159107328!GO:0051789;response to protein stimulus;0.00951232750462034!GO:0006986;response to unfolded protein;0.00951232750462034!GO:0048500;signal recognition particle;0.00968371906043348!GO:0006612;protein targeting to membrane;0.00995905319127178!GO:0000314;organellar small ribosomal subunit;0.0100930841687555!GO:0005763;mitochondrial small ribosomal subunit;0.0100930841687555!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.010289109265412!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.01045133038272!GO:0004674;protein serine/threonine kinase activity;0.0104863784728005!GO:0046578;regulation of Ras protein signal transduction;0.0105050690297098!GO:0046930;pore complex;0.0105757383123419!GO:0005815;microtubule organizing center;0.0107164329871294!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0107298860522204!GO:0019887;protein kinase regulator activity;0.0108994426830688!GO:0046870;cadmium ion binding;0.0110076521028157!GO:0005099;Ras GTPase activator activity;0.0110815312715587!GO:0030742;GTP-dependent protein binding;0.0110815312715587!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0110815312715587!GO:0005048;signal sequence binding;0.0111466145763835!GO:0048489;synaptic vesicle transport;0.0112022561267496!GO:0005868;cytoplasmic dynein complex;0.0112757914665067!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0113885033348701!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0113885033348701!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0114822881573081!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0116080953372526!GO:0065002;intracellular protein transport across a membrane;0.011678692471384!GO:0030320;cellular monovalent inorganic anion homeostasis;0.011678692471384!GO:0055083;monovalent inorganic anion homeostasis;0.011678692471384!GO:0055064;chloride ion homeostasis;0.011678692471384!GO:0030644;cellular chloride ion homeostasis;0.011678692471384!GO:0008021;synaptic vesicle;0.011678692471384!GO:0004298;threonine endopeptidase activity;0.0120222756662312!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0123057294488455!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0129147691399669!GO:0031902;late endosome membrane;0.0129743005017775!GO:0003746;translation elongation factor activity;0.0131780521096431!GO:0006891;intra-Golgi vesicle-mediated transport;0.0132733288231975!GO:0001666;response to hypoxia;0.0136671831360348!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0141704303007759!GO:0033673;negative regulation of kinase activity;0.0146682042561961!GO:0006469;negative regulation of protein kinase activity;0.0146682042561961!GO:0031124;mRNA 3'-end processing;0.0146682042561961!GO:0006333;chromatin assembly or disassembly;0.0151448980570641!GO:0000059;protein import into nucleus, docking;0.0154941510532068!GO:0051168;nuclear export;0.015525061639729!GO:0019902;phosphatase binding;0.0158228299102056!GO:0001578;microtubule bundle formation;0.0159878523627447!GO:0051261;protein depolymerization;0.0161547933968058!GO:0050839;cell adhesion molecule binding;0.0162866586546728!GO:0042802;identical protein binding;0.0162866586546728!GO:0044433;cytoplasmic vesicle part;0.0163834838997872!GO:0005885;Arp2/3 protein complex;0.0165939222409075!GO:0008186;RNA-dependent ATPase activity;0.0166216035827698!GO:0007005;mitochondrion organization and biogenesis;0.0172488989368369!GO:0001558;regulation of cell growth;0.0176491396810798!GO:0030119;AP-type membrane coat adaptor complex;0.018101909253663!GO:0045892;negative regulation of transcription, DNA-dependent;0.018101909253663!GO:0051287;NAD binding;0.0188331603565513!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0190058059428622!GO:0006665;sphingolipid metabolic process;0.01902075489474!GO:0030041;actin filament polymerization;0.019146022173712!GO:0035035;histone acetyltransferase binding;0.0192074530408383!GO:0030658;transport vesicle membrane;0.0193095312258853!GO:0030258;lipid modification;0.0194299329648886!GO:0030131;clathrin adaptor complex;0.0195858695060968!GO:0003690;double-stranded DNA binding;0.0201942883912021!GO:0016859;cis-trans isomerase activity;0.0205282928449273!GO:0008090;retrograde axon cargo transport;0.0208878240987852!GO:0033596;TSC1-TSC2 complex;0.0208878240987852!GO:0033693;neurofilament bundle assembly;0.0208878240987852!GO:0051348;negative regulation of transferase activity;0.0211872728268201!GO:0009165;nucleotide biosynthetic process;0.021418966575966!GO:0006672;ceramide metabolic process;0.0219496388764269!GO:0046488;phosphatidylinositol metabolic process;0.0223854752042899!GO:0043681;protein import into mitochondrion;0.0225509729326281!GO:0016740;transferase activity;0.0242148208739395!GO:0042578;phosphoric ester hydrolase activity;0.0242186955278524!GO:0030030;cell projection organization and biogenesis;0.025904479278188!GO:0048858;cell projection morphogenesis;0.025904479278188!GO:0032990;cell part morphogenesis;0.025904479278188!GO:0007050;cell cycle arrest;0.0259197743948578!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0261732125312824!GO:0045047;protein targeting to ER;0.0261732125312824!GO:0051427;hormone receptor binding;0.0262306841849149!GO:0019894;kinesin binding;0.0268130343596746!GO:0030660;Golgi-associated vesicle membrane;0.0275370255501383!GO:0051539;4 iron, 4 sulfur cluster binding;0.0275437876030113!GO:0043067;regulation of programmed cell death;0.0276002048219276!GO:0042254;ribosome biogenesis and assembly;0.0283537130879735!GO:0030384;phosphoinositide metabolic process;0.0292388362868772!GO:0015629;actin cytoskeleton;0.0296958273227644!GO:0048154;S100 beta binding;0.0297724020574699!GO:0000287;magnesium ion binding;0.0297724020574699!GO:0031628;opioid receptor binding;0.0297724020574699!GO:0031852;mu-type opioid receptor binding;0.0297724020574699!GO:0016579;protein deubiquitination;0.0298673325698336!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0303062440743703!GO:0031371;ubiquitin conjugating enzyme complex;0.0313714692266424!GO:0019752;carboxylic acid metabolic process;0.0325215924142635!GO:0042981;regulation of apoptosis;0.033065100970107!GO:0046519;sphingoid metabolic process;0.033065100970107!GO:0043488;regulation of mRNA stability;0.0331392627266779!GO:0043487;regulation of RNA stability;0.0331392627266779!GO:0030137;COPI-coated vesicle;0.0331392627266779!GO:0030125;clathrin vesicle coat;0.0331392627266779!GO:0030665;clathrin coated vesicle membrane;0.0331392627266779!GO:0046474;glycerophospholipid biosynthetic process;0.0332041735575504!GO:0051252;regulation of RNA metabolic process;0.0332348316240546!GO:0030659;cytoplasmic vesicle membrane;0.0332348316240546!GO:0008022;protein C-terminus binding;0.0333831075088932!GO:0004860;protein kinase inhibitor activity;0.0333831075088932!GO:0006399;tRNA metabolic process;0.0338179454677209!GO:0019783;small conjugating protein-specific protease activity;0.0338179454677209!GO:0042026;protein refolding;0.0339878380868533!GO:0009066;aspartate family amino acid metabolic process;0.0340273737299184!GO:0065007;biological regulation;0.0342359012142393!GO:0019911;structural constituent of myelin sheath;0.0343414709632243!GO:0042552;myelination;0.0344317380569306!GO:0000062;acyl-CoA binding;0.034966253215153!GO:0019207;kinase regulator activity;0.0352223119901131!GO:0003713;transcription coactivator activity;0.0352223119901131!GO:0043086;negative regulation of catalytic activity;0.035443647831171!GO:0006091;generation of precursor metabolites and energy;0.0360529669475184!GO:0016272;prefoldin complex;0.0363241391723629!GO:0050435;beta-amyloid metabolic process;0.0372912554174641!GO:0009081;branched chain family amino acid metabolic process;0.0372952045201582!GO:0017166;vinculin binding;0.0378761918113066!GO:0004004;ATP-dependent RNA helicase activity;0.0378761918113066!GO:0003711;transcription elongation regulator activity;0.0380326969590654!GO:0046839;phospholipid dephosphorylation;0.0380714646133526!GO:0015682;ferric iron transport;0.0384029501133574!GO:0015091;ferric iron transmembrane transporter activity;0.0384029501133574!GO:0031643;positive regulation of myelination;0.0384029501133574!GO:0007006;mitochondrial membrane organization and biogenesis;0.038423027602224!GO:0030911;TPR domain binding;0.0384950275290709!GO:0032287;myelin maintenance in the peripheral nervous system;0.0390932452547933!GO:0032838;cell projection cytoplasm;0.0390932452547933!GO:0033081;regulation of T cell differentiation in the thymus;0.0390932452547933!GO:0043217;myelin maintenance;0.0390932452547933!GO:0060087;relaxation of vascular smooth muscle;0.0390932452547933!GO:0032839;dendrite cytoplasm;0.0390932452547933!GO:0016408;C-acyltransferase activity;0.03977977475424!GO:0006082;organic acid metabolic process;0.0402415876231741!GO:0004843;ubiquitin-specific protease activity;0.0402415876231741!GO:0035257;nuclear hormone receptor binding;0.0409916692074377!GO:0017091;AU-rich element binding;0.0412605199040064!GO:0050779;RNA destabilization;0.0412605199040064!GO:0000289;poly(A) tail shortening;0.0412605199040064!GO:0045296;cadherin binding;0.041371351147959!GO:0006383;transcription from RNA polymerase III promoter;0.0417441681995579!GO:0030139;endocytic vesicle;0.0417737497464726!GO:0031123;RNA 3'-end processing;0.0425544402399741!GO:0005856;cytoskeleton;0.0425544402399741!GO:0031109;microtubule polymerization or depolymerization;0.0426574814687134!GO:0000209;protein polyubiquitination;0.0430750928829104!GO:0051276;chromosome organization and biogenesis;0.04308338653599!GO:0016615;malate dehydrogenase activity;0.0441463800168019!GO:0042995;cell projection;0.0441463800168019!GO:0006611;protein export from nucleus;0.0447264170531711!GO:0007034;vacuolar transport;0.0454099620004963!GO:0065009;regulation of a molecular function;0.0470645592737416!GO:0008250;oligosaccharyl transferase complex;0.0470702762362818!GO:0004221;ubiquitin thiolesterase activity;0.0487079381892269!GO:0021782;glial cell development;0.0493279615002444!GO:0022008;neurogenesis;0.0495408041946109!GO:0005667;transcription factor complex;0.0496734083372674!GO:0008312;7S RNA binding;0.0496734083372674!GO:0008180;signalosome;0.0497947296323175!GO:0030641;cellular hydrogen ion homeostasis;0.0498777022389599
 
|sample_id=10182
 
|sample_id=10182
 
|sample_note=biological replicate
 
|sample_note=biological replicate
Line 76: Line 100:
 
|sample_tissue=locus coeruleus
 
|sample_tissue=locus coeruleus
 
|top_motifs=REST:3.4612153696;SOX2:3.26847257765;MYFfamily:3.25720988543;NHLH1,2:3.1926523195;MTF1:3.17597833668;SOX5:3.11723342931;RREB1:3.07495197278;ZFP161:2.97161365241;HIC1:2.82044729224;DBP:2.73683031051;MED-1{core}:2.63268911072;NFIX:2.61926454577;PRDM1:2.61461677855;PRRX1,2:2.55195947251;MTE{core}:2.54256120786;ATF2:2.49698064446;RFX1:2.48625688943;SOX{8,9,10}:2.47400080459;RFX2..5_RFXANK_RFXAP:2.41887829559;ZBTB6:2.409318411;TFAP2B:2.37338760627;CUX2:2.37268629176;NANOG:2.29772577751;LMO2:2.24834892161;GFI1B:2.22705347954;OCT4_SOX2{dimer}:2.22424281469;EGR1..3:2.202735277;GATA4:2.19212214499;NKX3-2:2.18006628059;GTF2I:2.17794203561;KLF4:2.16808997816;PAX6:2.15119172651;SMAD1..7,9:2.14486352473;HOXA9_MEIS1:2.13430002242;FOXP3:2.11279044092;TGIF1:2.05958290483;HOX{A6,A7,B6,B7}:2.05454003262;PATZ1:2.05242099696;SOX17:1.99883892868;JUN:1.99090069329;HBP1_HMGB_SSRP1_UBTF:1.92926540026;MZF1:1.91456556428;MAZ:1.76236469253;EP300:1.75830779643;BREu{core}:1.73542754936;FOXD3:1.69792833156;SP1:1.69294373999;ZNF384:1.63683783841;PAX5:1.63298467978;GCM1,2:1.61007581336;NKX6-1,2:1.60414865484;AHR_ARNT_ARNT2:1.5899397087;EBF1:1.56392946264;XBP1:1.54243101565;PDX1:1.51199414622;STAT2,4,6:1.50946317993;POU6F1:1.47505309352;FOXM1:1.47251600387;ZNF423:1.45915454318;TFDP1:1.41282739735;LEF1_TCF7_TCF7L1,2:1.3953982831;BPTF:1.35868645554;MYBL2:1.32370666205;FOXP1:1.28525526481;RBPJ:1.23371814522;POU5F1:1.23295099008;NR3C1:1.19865923251;STAT1,3:1.17381931286;NRF1:1.1734158979;RORA:1.16502925818;POU3F1..4:1.15345431815;IKZF2:1.1448834086;ZIC1..3:1.13654104034;TFAP2{A,C}:1.13142209846;CDC5L:1.10772719417;ARID5B:1.06533030224;TLX1..3_NFIC{dimer}:1.02253655765;VSX1,2:1.01491920051;FOXQ1:0.996437319196;NKX2-3_NKX2-5:0.970222462504;HOX{A4,D4}:0.909130809355;ONECUT1,2:0.847569930825;FOX{D1,D2}:0.83548915154;AR:0.764225752728;SREBF1,2:0.761159280039;CRX:0.73850932352;MAFB:0.707446416353;ZNF143:0.689192998852;LHX3,4:0.663356160293;ADNP_IRX_SIX_ZHX:0.64009222103;ZBTB16:0.628451345664;HMGA1,2:0.61175983417;PAX4:0.504485105883;CREB1:0.471432125052;GTF2A1,2:0.443717262151;FOXO1,3,4:0.440905925087;ESRRA:0.421624454881;T:0.420956320079;FOXN1:0.418598892451;NKX3-1:0.398190782075;ATF5_CREB3:0.317350056504;XCPE1{core}:0.310050967761;FOX{F1,F2,J1}:0.300845394414;IRF7:0.282013065057;FOX{I1,J2}:0.253852631567;ATF4:0.21054774742;GFI1:0.210192538507;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.155148317182;NFIL3:0.131394840093;EVI1:0.130683118449;PAX2:0.122302678184;HMX1:0.11609045008;GZF1:0.098230400282;MEF2{A,B,C,D}:0.0280197190496;PBX1:0.016836579756;NFY{A,B,C}:0.00548663563213;ALX1:-0.00715185644759;ZEB1:-0.0111020490585;HAND1,2:-0.0526798276773;NR5A1,2:-0.0748315978365;NFATC1..3:-0.0776234939237;IRF1,2:-0.0928309631718;SPZ1:-0.0944717758489;TFCP2:-0.0963175302361;NFE2L2:-0.098030067777;MYOD1:-0.119451471581;TOPORS:-0.120797505289;FOXL1:-0.178153747349;AIRE:-0.194314743359;ZNF238:-0.241518959283;NR1H4:-0.271014641218;NFE2L1:-0.275409052166;CEBPA,B_DDIT3:-0.277649403806;UFEwm:-0.282534065905;PAX3,7:-0.287809898827;CDX1,2,4:-0.307843555284;NFE2:-0.316750580281;ATF6:-0.329981772314;POU1F1:-0.339848685699;PITX1..3:-0.380874743071;NKX2-1,4:-0.390399578058;ALX4:-0.393494358076;GATA6:-0.469785895947;TBX4,5:-0.473235721751;YY1:-0.534181808042;FOXA2:-0.534259096111;SPI1:-0.577917426206;NANOG{mouse}:-0.581700490288;TP53:-0.591658027452;TBP:-0.596892931839;TLX2:-0.601202886153;TEF:-0.65698837616;ETS1,2:-0.659064052531;HNF4A_NR2F1,2:-0.666558495347;IKZF1:-0.68158762729;TFAP4:-0.702841512057;HNF1A:-0.73889951789;DMAP1_NCOR{1,2}_SMARC:-0.75438384131;NKX2-2,8:-0.77344025755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.781022444692;SPIB:-0.806621209063;bHLH_family:-0.81142766039;HSF1,2:-0.88055871951;SNAI1..3:-0.905126291912;PAX8:-0.907077101738;HIF1A:-0.93185683147;TEAD1:-0.937193329778;ESR1:-0.940216968836;BACH2:-0.942597842913;FOS_FOS{B,L1}_JUN{B,D}:-0.948073139394;FOSL2:-0.990727282183;PAX1,9:-1.01080500855;SRF:-1.09195916311;E2F1..5:-1.2223350223;NFKB1_REL_RELA:-1.22604444369;HLF:-1.23533488092;ELK1,4_GABP{A,B1}:-1.24650392647;ELF1,2,4:-1.32985581098;RUNX1..3:-1.34702588647;RXR{A,B,G}:-1.3620364759;POU2F1..3:-1.36997617815;ZNF148:-1.43932916314;NR6A1:-1.52446640412;MYB:-1.53379996216;HES1:-1.59129664022;TAL1_TCF{3,4,12}:-1.71925284182;GLI1..3:-1.83532879427;PPARG:-1.96568154983;RXRA_VDR{dimer}:-2.33995500824;HOX{A5,B5}:-2.40760983777;STAT5{A,B}:-2.55389876892;EN1,2:-2.80531514899
 
|top_motifs=REST:3.4612153696;SOX2:3.26847257765;MYFfamily:3.25720988543;NHLH1,2:3.1926523195;MTF1:3.17597833668;SOX5:3.11723342931;RREB1:3.07495197278;ZFP161:2.97161365241;HIC1:2.82044729224;DBP:2.73683031051;MED-1{core}:2.63268911072;NFIX:2.61926454577;PRDM1:2.61461677855;PRRX1,2:2.55195947251;MTE{core}:2.54256120786;ATF2:2.49698064446;RFX1:2.48625688943;SOX{8,9,10}:2.47400080459;RFX2..5_RFXANK_RFXAP:2.41887829559;ZBTB6:2.409318411;TFAP2B:2.37338760627;CUX2:2.37268629176;NANOG:2.29772577751;LMO2:2.24834892161;GFI1B:2.22705347954;OCT4_SOX2{dimer}:2.22424281469;EGR1..3:2.202735277;GATA4:2.19212214499;NKX3-2:2.18006628059;GTF2I:2.17794203561;KLF4:2.16808997816;PAX6:2.15119172651;SMAD1..7,9:2.14486352473;HOXA9_MEIS1:2.13430002242;FOXP3:2.11279044092;TGIF1:2.05958290483;HOX{A6,A7,B6,B7}:2.05454003262;PATZ1:2.05242099696;SOX17:1.99883892868;JUN:1.99090069329;HBP1_HMGB_SSRP1_UBTF:1.92926540026;MZF1:1.91456556428;MAZ:1.76236469253;EP300:1.75830779643;BREu{core}:1.73542754936;FOXD3:1.69792833156;SP1:1.69294373999;ZNF384:1.63683783841;PAX5:1.63298467978;GCM1,2:1.61007581336;NKX6-1,2:1.60414865484;AHR_ARNT_ARNT2:1.5899397087;EBF1:1.56392946264;XBP1:1.54243101565;PDX1:1.51199414622;STAT2,4,6:1.50946317993;POU6F1:1.47505309352;FOXM1:1.47251600387;ZNF423:1.45915454318;TFDP1:1.41282739735;LEF1_TCF7_TCF7L1,2:1.3953982831;BPTF:1.35868645554;MYBL2:1.32370666205;FOXP1:1.28525526481;RBPJ:1.23371814522;POU5F1:1.23295099008;NR3C1:1.19865923251;STAT1,3:1.17381931286;NRF1:1.1734158979;RORA:1.16502925818;POU3F1..4:1.15345431815;IKZF2:1.1448834086;ZIC1..3:1.13654104034;TFAP2{A,C}:1.13142209846;CDC5L:1.10772719417;ARID5B:1.06533030224;TLX1..3_NFIC{dimer}:1.02253655765;VSX1,2:1.01491920051;FOXQ1:0.996437319196;NKX2-3_NKX2-5:0.970222462504;HOX{A4,D4}:0.909130809355;ONECUT1,2:0.847569930825;FOX{D1,D2}:0.83548915154;AR:0.764225752728;SREBF1,2:0.761159280039;CRX:0.73850932352;MAFB:0.707446416353;ZNF143:0.689192998852;LHX3,4:0.663356160293;ADNP_IRX_SIX_ZHX:0.64009222103;ZBTB16:0.628451345664;HMGA1,2:0.61175983417;PAX4:0.504485105883;CREB1:0.471432125052;GTF2A1,2:0.443717262151;FOXO1,3,4:0.440905925087;ESRRA:0.421624454881;T:0.420956320079;FOXN1:0.418598892451;NKX3-1:0.398190782075;ATF5_CREB3:0.317350056504;XCPE1{core}:0.310050967761;FOX{F1,F2,J1}:0.300845394414;IRF7:0.282013065057;FOX{I1,J2}:0.253852631567;ATF4:0.21054774742;GFI1:0.210192538507;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.155148317182;NFIL3:0.131394840093;EVI1:0.130683118449;PAX2:0.122302678184;HMX1:0.11609045008;GZF1:0.098230400282;MEF2{A,B,C,D}:0.0280197190496;PBX1:0.016836579756;NFY{A,B,C}:0.00548663563213;ALX1:-0.00715185644759;ZEB1:-0.0111020490585;HAND1,2:-0.0526798276773;NR5A1,2:-0.0748315978365;NFATC1..3:-0.0776234939237;IRF1,2:-0.0928309631718;SPZ1:-0.0944717758489;TFCP2:-0.0963175302361;NFE2L2:-0.098030067777;MYOD1:-0.119451471581;TOPORS:-0.120797505289;FOXL1:-0.178153747349;AIRE:-0.194314743359;ZNF238:-0.241518959283;NR1H4:-0.271014641218;NFE2L1:-0.275409052166;CEBPA,B_DDIT3:-0.277649403806;UFEwm:-0.282534065905;PAX3,7:-0.287809898827;CDX1,2,4:-0.307843555284;NFE2:-0.316750580281;ATF6:-0.329981772314;POU1F1:-0.339848685699;PITX1..3:-0.380874743071;NKX2-1,4:-0.390399578058;ALX4:-0.393494358076;GATA6:-0.469785895947;TBX4,5:-0.473235721751;YY1:-0.534181808042;FOXA2:-0.534259096111;SPI1:-0.577917426206;NANOG{mouse}:-0.581700490288;TP53:-0.591658027452;TBP:-0.596892931839;TLX2:-0.601202886153;TEF:-0.65698837616;ETS1,2:-0.659064052531;HNF4A_NR2F1,2:-0.666558495347;IKZF1:-0.68158762729;TFAP4:-0.702841512057;HNF1A:-0.73889951789;DMAP1_NCOR{1,2}_SMARC:-0.75438384131;NKX2-2,8:-0.77344025755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.781022444692;SPIB:-0.806621209063;bHLH_family:-0.81142766039;HSF1,2:-0.88055871951;SNAI1..3:-0.905126291912;PAX8:-0.907077101738;HIF1A:-0.93185683147;TEAD1:-0.937193329778;ESR1:-0.940216968836;BACH2:-0.942597842913;FOS_FOS{B,L1}_JUN{B,D}:-0.948073139394;FOSL2:-0.990727282183;PAX1,9:-1.01080500855;SRF:-1.09195916311;E2F1..5:-1.2223350223;NFKB1_REL_RELA:-1.22604444369;HLF:-1.23533488092;ELK1,4_GABP{A,B1}:-1.24650392647;ELF1,2,4:-1.32985581098;RUNX1..3:-1.34702588647;RXR{A,B,G}:-1.3620364759;POU2F1..3:-1.36997617815;ZNF148:-1.43932916314;NR6A1:-1.52446640412;MYB:-1.53379996216;HES1:-1.59129664022;TAL1_TCF{3,4,12}:-1.71925284182;GLI1..3:-1.83532879427;PPARG:-1.96568154983;RXRA_VDR{dimer}:-2.33995500824;HOX{A5,B5}:-2.40760983777;STAT5{A,B}:-2.55389876892;EN1,2:-2.80531514899
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10182-103D2;search_select_hide=table117:FF:10182-103D2
 
}}
 
}}

Latest revision as of 03:25, 3 June 2020

Name:locus coeruleus - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13808
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelocus coeruleus
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004969
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13808 CAGE DRX008676 DRR009548
Accession ID Hg19

Library idBAMCTSS
CNhs13808 DRZ000973 DRZ002358
Accession ID Hg38

Library idBAMCTSS
CNhs13808 DRZ012323 DRZ013708
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.217
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.691
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.337
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0528
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.613
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.335
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0528
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0763
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0999
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.627
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00863
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.158
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.848
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0528
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0528
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.135
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0528
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0164
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0528
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.776
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.137
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.613
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.505
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0528
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.539
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.384
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0528
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal1.002
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0642
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.128
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.652
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0999
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.0999
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.181
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.511
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.806
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.002
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0528
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.181
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.191
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0528
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.393
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.335
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.599
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0528
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.36
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0248
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0.0528
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13808

Jaspar motifP-value
MA0002.20.0381
MA0003.10.229
MA0004.10.293
MA0006.10.477
MA0007.10.377
MA0009.10.192
MA0014.10.728
MA0017.10.00477
MA0018.20.0415
MA0019.10.803
MA0024.10.705
MA0025.10.698
MA0027.10.645
MA0028.10.0647
MA0029.10.205
MA0030.10.318
MA0031.10.78
MA0035.20.0112
MA0038.10.246
MA0039.20.341
MA0040.10.649
MA0041.10.81
MA0042.10.703
MA0043.10.499
MA0046.10.0208
MA0047.20.0854
MA0048.10.11
MA0050.10.0254
MA0051.10.123
MA0052.10.757
MA0055.10.00107
MA0057.10.748
MA0058.10.302
MA0059.10.075
MA0060.10.31
MA0061.10.00555
MA0062.20.00281
MA0065.20.00104
MA0066.10.0127
MA0067.10.573
MA0068.10.631
MA0069.10.732
MA0070.10.185
MA0071.10.0415
MA0072.10.714
MA0073.10.444
MA0074.10.182
MA0076.10.123
MA0077.10.0278
MA0078.10.839
MA0079.20.586
MA0080.24.87447e-8
MA0081.10.0273
MA0083.10.108
MA0084.10.227
MA0087.10.221
MA0088.10.13
MA0090.10.239
MA0091.10.333
MA0092.10.291
MA0093.10.344
MA0099.21.25751e-13
MA0100.10.699
MA0101.10.00462
MA0102.20.293
MA0103.10.068
MA0104.20.33
MA0105.11.5944e-4
MA0106.10.0258
MA0107.10.00405
MA0108.20.491
MA0111.10.5
MA0112.20.00104
MA0113.10.495
MA0114.10.00789
MA0115.10.829
MA0116.10.00233
MA0117.10.877
MA0119.10.1
MA0122.10.88
MA0124.10.862
MA0125.10.192
MA0131.10.819
MA0135.10.0141
MA0136.17.53915e-12
MA0137.20.0696
MA0138.20.252
MA0139.10.349
MA0140.10.00884
MA0141.10.0153
MA0142.10.356
MA0143.10.0631
MA0144.10.934
MA0145.10.347
MA0146.10.0212
MA0147.10.202
MA0148.10.0976
MA0149.10.0148
MA0150.10.0023
MA0152.10.742
MA0153.10.493
MA0154.10.0249
MA0155.10.654
MA0156.15.01237e-7
MA0157.10.583
MA0159.10.00991
MA0160.10.0724
MA0162.10.155
MA0163.11.00061e-7
MA0164.10.6
MA0258.10.0138
MA0259.10.646



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13808

Novel motifP-value
10.0438
100.0425
1000.333
1010.824
1020.876
1030.0667
1040.139
1050.164
1060.0521
1070.167
1080.913
1090.00468
110.0105
1100.0334
1110.205
1120.419
1130.53
1140.133
1150.842
1160.156
1170.00714
1180.0982
1190.248
120.624
1200.141
1210.447
1220.915
1230.968
1240.134
1250.257
1260.0686
1270.45
1280.225
1290.448
130.00209
1300.226
1310.0231
1320.732
1330.0104
1340.69
1350.19
1360.00643
1370.574
1380.775
1390.108
140.898
1400.55
1410.496
1420.827
1430.0408
1440.875
1450.155
1460.396
1470.603
1480.297
1490.0955
150.0557
1500.159
1510.728
1520.167
1530.935
1540.455
1550.789
1560.229
1570.459
1580.145
1590.00649
160.0414
1600.196
1610.162
1620.84
1630.842
1640.0108
1650.114
1660.963
1670.783
1680.357
1690.0151
170.0898
180.072
190.285
20.895
200.171
210.0635
220.274
230.487
240.0379
250.53
261.51374e-4
270.722
280.791
290.00891
30.0371
300.866
310.901
320.0126
330.0704
340.739
350.378
360.173
370.0468
380.31
390.43
40.961
400.0577
410.29
420.209
430.118
440.122
450.714
460.0328
470.0488
480.0375
490.22
50.695
500.358
510.362
520.715
530.903
540.425
550.611
560.51
570.302
580.33
590.0664
60.939
600.114
610.0779
620.158
630.174
640.157
650.22
660.183
670.363
680.373
690.614
70.0847
700.0154
710.00566
720.356
730.0624
740.873
750.0204
760.303
770.162
780.00346
790.273
80.0575
800.458
810.427
820.621
830.0801
840.511
850.383
860.15
876.95285e-4
880.751
890.194
90.496
900.0842
910.699
920.562
930.585
940.129
950.0215
960.802
970.605
980.248
990.526



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13808


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0002148 (locus ceruleus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0006331 (brainstem nucleus)
0009662 (hindbrain nucleus)
0000125 (neural nucleus)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011487 (human locus coeruleus- adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)