FF:10414-106B9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005218 | ||
| | |HumanCAGEScanFiles=NCig10055;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.NCig10055.10414-106B9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.NCig10055.10414-106B9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.NCig10055.10414-106B9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.NCig10055.10414-106B9.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX007927;DRR008799;DRZ000224;DRZ001609;DRZ011574;DRZ012959 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000033,UBERON:0001764,UBERON:0000466,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001825,UBERON:0000464,UBERON:0001004,UBERON:0000153,UBERON:0007811 | |||
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|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
| | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050619,DOID:1357 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.54!550.95!FOXQ1;;chr1:214161272..214161322,+!p1@PROX1!2.20!218.31!PROX1;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.73!ELF3;;chr3:181429704..181429722,+!p1@SOX2!1.96!90.93!SOX2;;chr20:22565370..22565388,-!p2@FOXA2!1.74!53.87!FOXA2;;chr1:201979703..201979721,+!p2@ELF3!1.72!51.67!ELF3;;chr1:214161328..214161348,+!p2@PROX1!1.63!41.46!PROX1;;chr1:214161358..214161377,+!p3@PROX1!1.55!34.24!PROX1;;chr3:181429741..181429767,+!p2@SOX2!1.49!30.15!SOX2;;chr8:102504651..102504683,+!p1@GRHL2!1.49!29.84!GRHL2;;chr13:72441315..72441454,-!p1@DACH1!1.48!57.48!DACH1;;chr3:52643526..52643537,-!p8@PBRM1!1.48!29.21!PBRM1;;chr3:137483141..137483162,+!p1@SOX14!1.38!23.24!SOX14;;chr13:79177703..79177729,-!p2@POU4F1!1.36!21.83!POU4F1;;chr22:19748231..19748317,+!p1@TBX1!1.35!21.36!TBX1;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.35!21.20!SOHLH2;;chr1:8483878..8483907,-!p4@RERE!1.34!78.68!RERE;;chr14:37131058..37131139,+!p1@PAX9!1.33!20.26!PAX9;;chr13:79177674..79177701,-!p1@POU4F1!1.31!19.63!POU4F1;;chr13:73633131..73633149,+!p1@KLF5!1.29!191.76!KLF5;;chr6:1389789..1389821,+!p1@FOXF2!1.28!24.50!FOXF2;;chr4:109089901..109089930,-!p3@LEF1!1.27!17.59!LEF1;;chr1:8763440..8763460,-!p2@RERE!1.26!84.65!RERE;;chr13:100634031..100634045,+!p1@ZIC2!1.24!16.33!ZIC2;;chr12:54785074..54785122,-!p2@ZNF385A!1.23!24.50!ZNF385A;;chr17:35294075..35294102,+!p1@ENST00000559335!1.23!16.18!LHX1;;chr13:72441074..72441172,-!p2@DACH1!1.22!15.71!DACH1;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.39!ZNF727;;chr2:172967621..172967637,-!p1@DLX2!1.19!38.48!DLX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.19!14.45!MLXIPL;;chr20:22564895..22564910,-!p1@FOXA2!1.19!14.45!FOXA2;;chr18:53257001..53257015,-!p5@TCF4!1.17!23.56!TCF4;;chr6:10413188..10413249,-!p7@TFAP2A!1.17!13.66!TFAP2A;;chr17:41622925..41622976,-!p3@ETV4!1.16!19.95!ETV4;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.51!CASZ1;;chr17:48072574..48072597,-!p1@DLX3!1.15!13.19!DLX3;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.72!IRX2;;chr1:40367530..40367597,-!p1@MYCL1!1.13!22.46!MYCL1;;chr14:38064429..38064486,-!p1@FOXA1!1.13!12.41!FOXA1;;chrY:21906594..21906622,-!p1@KDM5D!1.11!11.78!KDM5D;;chrX:30327504..30327509,-!p1@NR0B1!1.10!11.46!NR0B1;;chr1:164528297..164528309,+!p9@PBX1!1.08!14.45!PBX1;;chr7:96634850..96634874,+!p3@DLX6!1.08!10.99!DLX6;;chr1:40367668..40367684,-!p2@MYCL1!1.07!10.84!MYCL1;;chr8:37553292..37553317,+!p1@ZNF703!1.06!250.82!ZNF703;;chr1:10856665..10856683,-!p4@CASZ1!1.06!10.37!CASZ1;;chr5:124084493..124084524,-!p2@ZNF608!1.05!23.09!ZNF608;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.05!22.30!ZNF395;;chr1:209979467..209979494,-!p1@IRF6!1.05!11.46!IRF6;;chr1:10856639..10856662,-!p2@CASZ1!1.04!9.89!CASZ1;;chr6:1312155..1312187,+!p2@FOXQ1!1.04!9.89!FOXQ1;;chr6:28321971..28321995,-!p1@ZNF323!1.03!9.74!ZNF323;;chr20:18038521..18038571,-!p1@OVOL2!1.03!9.74!OVOL2;;chr1:8763463..8763499,-!p6@RERE!1.02!26.54!RERE;;chr6:99282438..99282457,+!p2@POU3F2!1.02!9.58!POU3F2;;chr2:171571827..171571853,+!p1@SP5!1.02!9.42!SP5;;chr18:53253323..53253359,-!p19@TCF4!1.02!9.42!TCF4;;chr1:8763296..8763339,-!p9@RERE!1.01!22.93!RERE;;chr8:40755333..40755352,-!p1@ZMAT4!1.01!9.27!ZMAT4;;chr7:14028488..14028516,-!p2@ETV1!1.00!9.89!ETV1;;chr2:171572786..171572840,+!p2@SP5!1.00!9.11!SP5;;chr13:100623375..100623425,-!p1@ZIC5!1.00!8.95!ZIC5;;chr17:7197911..7197964,-!p1@YBX2!0.99!8.80!YBX2;;chr7:156803329..156803362,-!p1@MNX1!0.99!8.80!MNX1;;chr2:60780753..60780800,-!p1@BCL11A!0.98!43.50!BCL11A;;chr8:116681275..116681290,-!p11@TRPS1!0.98!10.84!TRPS1;;chr8:116681221..116681236,-!p3@TRPS1!0.97!25.29!TRPS1;;chr8:116681409..116681431,-!p2@TRPS1!0.97!23.24!TRPS1;;chr3:114343826..114343869,-!p4@ZBTB20!0.97!17.12!ZBTB20;;chr8:102504979..102505010,+!p2@GRHL2!0.97!8.32!GRHL2;;chr1:214161428..214161437,+!p6@PROX1!0.96!8.17!PROX1;;chr8:37553261..37553282,+!p2@ZNF703!0.95!62.82!ZNF703;;chr17:41623692..41623715,-!p1@ETV4!0.95!34.71!ETV4;;chr6:126102254..126102289,+!p5@NCOA7!0.95!22.62!NCOA7;;chr2:122042770..122042785,-!p1@TFCP2L1!0.95!7.85!TFCP2L1;;chr9:14314131..14314147,-!p2@NFIB!0.93!43.35!NFIB;;chrX:70503037..70503095,+!p3@NONO!0.93!12.56!NONO;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.54!HOXD8;;chr15:60884706..60884743,-!p1@RORA!0.92!39.42!RORA;;chr5:43120995..43121052,+!p1@ZNF131!0.92!38.79!ZNF131;;chr7:27135591..27135658,-!p1@HOXA1!0.92!14.61!HOXA1;;chr18:53256971..53256984,-!p26@TCF4!0.92!7.38!TCF4;;chr2:63277948..63277974,+!p1@OTX1!0.92!7.38!OTX1;;chr8:102504690..102504704,+!p3@GRHL2!0.91!7.07!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!0.90!6.91!DLX5;;chr1:164528687..164528711,+!p6@PBX1!0.89!8.01!PBX1;;chrX:85403445..85403479,+!p2@DACH2!0.89!6.75!DACH2;;chr4:109089996..109090012,-!p5@LEF1!0.89!6.75!LEF1;;chr18:53255415..53255491,-!p1@TCF4!0.88!58.58!TCF4;;chr12:115121962..115121987,-!p1@TBX3!0.88!58.11!TBX3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.99!RUNX2;;chr10:114710098..114710130,+!p2@TCF7L2!0.87!50.41!TCF7L2;;chr22:24093154..24093183,-!p2@ZNF70!0.87!6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chr14:89029323..89029329,+!p4@ZC3H14!0.28!1.41!ZC3H14;;chr19:12163769..12163798,-!p1@ZNF878!0.28!1.41!ZNF878;;chr19:36545320..36545335,-!p5@THAP8!0.28!1.26!THAP8;;chr12:54694758..54694805,-!p1@NFE2!0.28!1.26!NFE2;;chr20:62601309..62601320,-!p2@ZNF512B!0.28!1.26!ZNF512B;;chr6:151694975..151694979,-!p7@ZBTB2!0.28!1.26!ZBTB2;;chr19:57019098..57019142,+!p3@ZNF471!0.28!1.10!ZNF471;;chr4:146860163..146860188,-!p5@ZNF827!0.28!1.10!ZNF827;;chr22:39916558..39916579,+!p1@ATF4!0.27!498.02!ATF4;;chr2:187350973..187351072,+!p1@ZC3H15!0.27!148.26!ZC3H15;;chrX:70503447..70503517,+!p1@NONO!0.27!137.27!NONO;;chr12:51157837..51157892,+!p1@ATF1!0.27!36.12!ATF1;;chr3:71114066..71114114,-!p1@FOXP1!0.27!34.24!FOXP1;;chr7:139762641..139762768,-!p1@PARP12!0.27!22.62!PARP12;;chr15:96873892..96873919,+!p4@NR2F2!0.27!16.02!NR2F2;;chr17:36861496..36861586,+!p1@MLLT6!0.27!15.71!MLLT6;;chr10:105110831..105110885,-!p1@PCGF6!0.27!15.71!PCGF6;;chr3:71179699..71179744,-!p2@FOXP1!0.27!11.94!FOXP1;;chr19:56110859..56110917,-!p1@FIZ1!0.27!10.37!FIZ1;;chr19:49140609..49140643,-!p1@DBP!0.27!8.95!DBP;;chr17:5015129..5015187,-!p1@ZNF232!0.27!8.48!ZNF232;;chr5:178157651..178157689,-!p1@ZNF354A!0.27!6.28!ZNF354A;;chr1:164528384..164528409,+!p3@PBX1!0.27!4.55!PBX1;;chr19:36705617..36705644,+!p4@ZNF146!0.27!4.08!ZNF146;;chr15:56535946..56535987,-!p1@RFX7!0.27!3.14!RFX7;;chr6:91006518..91006570,-!p1@BACH2!0.27!3.14!BACH2;;chr19:52839515..52839572,+!p1@ZNF610!0.27!2.83!ZNF610;;chr1:91487516..91487528,-!p4@ZNF644!0.27!2.83!ZNF644;;chr12:57919364..57919394,+!p4@MBD6!0.27!2.67!MBD6;;chr19:10305752..10305792,-!p2@DNMT1!0.27!2.20!DNMT1;;chr12:50479101..50479108,+!p3@SMARCD1!0.27!1.88!SMARCD1;;chr5:178287021..178287042,+!p2@ZNF354B!0.27!1.88!ZNF354B;;chr7:74072288..74072299,+!p7@GTF2I!0.27!1.41!GTF2I;;chr12:133706975..133707013,-!p3@ZNF891!0.27!1.41!ZNF891;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.27!1.41!GLIS2;;chr11:19262486..19262512,-!p4@E2F8!0.27!1.26!E2F8;;chr6:122720681..122720713,+!p3@HSF2!0.27!1.26!HSF2;;chr19:52839490..52839508,+!p2@ZNF610!0.27!1.26!ZNF610;;chr1:67395833..67395851,+!p8@MIER1!0.27!1.26!MIER1;;chr3:141868230..141868250,-!p6@TFDP2!0.27!1.26!TFDP2;;chr5:124080203..124080258,-!p5@ZNF608!0.27!1.10!ZNF608;;chr1:6845497..6845561,+!p1@CAMTA1!0.26!60.31!CAMTA1;;chr6:44355423..44355470,+!p1@CDC5L!0.26!58.74!CDC5L;;chr13:46626847..46626899,-!p1@ZC3H13!0.26!51.20!ZC3H13;;chr17:38804061..38804112,-!p1@SMARCE1!0.26!43.66!SMARCE1;;chr17:61920023..61920110,-!p1@SMARCD2!0.26!22.46!SMARCD2;;chr19:58331088..58331106,+!p1@ZNF587!0.26!22.46!ZNF587;;chr6:87865262..87865311,+!p1@ZNF292!0.26!21.36!ZNF292;;chr1:151431909..151431987,-!p1@POGZ!0.26!18.85!POGZ;;chr1:41157266..41157314,+!p3@NFYC!0.26!13.19!NFYC;;chr7:26191809..26191890,+!p1@NFE2L3!0.26!7.54!NFE2L3;;chr19:53073532..53073551,+!p1@ZNF701!0.26!6.75!ZNF701;;chr9:125693757..125693818,-!p1@ZBTB26!0.26!6.60!ZBTB26;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.26!6.13!ZNF816;;chr6:35227282..35227330,+!p2@ZNF76!0.26!5.34!ZNF76;;chr19:52408285..52408310,-!p3@ZNF649!0.26!3.14!ZNF649;;chr19:35168633..35168652,+!p2@ZNF302!0.26!3.14!ZNF302;;chr14:61191018..61191048,-!p1@SIX4!0.26!2.83!SIX4;;chr20:42143077..42143126,+!p1@L3MBTL1!0.26!2.67!L3MBTL;;chr16:31724618..31724630,+!p2@ZNF720!0.26!2.36!ZNF720;;chr3:178789622..178789633,-!p3@ZMAT3!0.26!2.36!ZMAT3;;chr5:132299572..132299623,-!p6@AFF4!0.26!2.20!AFF4;;chr18:32924431..32924440,-!p2@ZNF24!0.26!2.04!ZNF24;;chr10:114710553..114710585,+!p6@TCF7L2!0.26!2.04!TCF7L2;;chr2:85981222..85981259,+!p2@ATOH8!0.26!1.88!ATOH8;;chr19:37019569..37019593,-!p2@ZNF260!0.26!1.88!ZNF260;;chr6:168227611..168227624,+!p2@MLLT4!0.26!1.57!MLLT4;; | |||
|fonse_cell_line=FF:10414-106B9 | |fonse_cell_line=FF:10414-106B9 | ||
|fonse_cell_line_closure=FF:10414-106B9 | |fonse_cell_line_closure=FF:10414-106B9 | ||
| Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.CNhs10732.10414-106B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.CNhs10732.10414-106B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.CNhs10732.10414-106B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.CNhs10732.10414-106B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/maxillary%2520sinus%2520tumor%2520cell%2520line%253aHSQ-89.CNhs10732.10414-106B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10414-106B9 | |||
|is_a=DOID:1357;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0001764 | |||
|is_obsolete= | |||
|library_id=CNhs10732 | |||
|library_id_phase_based=2:CNhs10732 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10414 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10414 | |||
|name=maxillary sinus tumor cell line:HSQ-89 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=NCig10055,,, | |||
|profile_hcage=CNhs10732,LSID691,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0316768320920175,0,0,0,0,-0.160318030086386,0.118631122812508,-0.090622416907213,-0.250726728484924,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0899693461643928,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.174808207548453,0,0,0,0,0,0,0,0,0.101636990964418,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.154360396941408,0,0,0,0,0,0,0,0,0.0633536641840349,0,0,0,0,0,0,0,0,0,0.115507124003458,0,0,0,0.0633536641840349,0,0.167660583822881,0.69230219360414,0,0.00540163637911761,0.216676951886934,0.080230337971173,0,0.0633536641840349,0.0316768320920175,0.0633536641840349,0.0205957715748014,-0.106800368708878,0,0,0,0,0,0,0,0,0,0,0.0316768320920175,0,0,0,0,0,0,-0.0125433020110206,0.0633536641840349,0,0,-0.060819961675157,-0.208003423680029,0.0633536641840349,0,0,0,0,0.0633536641840349 | |||
|repeat_enrich_byname=0,0.322090781168434,0,0,0.0205957715748014,0,0.0633536641840349,0.0633536641840349,0.0633536641840349,0.582855481334084,1.38460438720828,0,0,0.0633536641840349,0,0.0633536641840349,0.235937966703046,0.115507124003458,-0.0139932190460116,0.402146384338871,0.0316768320920175,0,0.0104162371089118,0.0633536641840349,0.167660583822881,0,0.0794510397428835,0,0,0.0633536641840349,0,0.0633536641840349,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.114942499743256,0.183359763077136,0,0.0633536641840349,0,0,-0.0850730958508179,0,0.201211297374693,0.128991952479835,0.525797550715089,-0.342439475763737,0.0165490052916549,0,0,0,-0.605776699064879,0.739209669080769,0,0,-0.121779851751874,-0.122034057154405,0,0,0.736295890616068,0,0.240968440028171,-0.0730303154838472,0,0.0345615238529545,0,0,0,0,0,0,0,0,0.322090781168434,0,0,-0.0574934668214365,0.464195560318588,0,0.211712120803252,0.756759525224457,0,-0.0264808116427959,0,0.0633536641840349,-0.161574035153315,0.190461023221136,0.159026214381251,0.16598859946123,0.00139103340834501,-0.302389727009913,0.0188192649615764,-0.165939844455834,0.00252720083608304,-0.147401849371139,0.314999576915216,0,-0.0447196023797761,0.0759878172985763,0.021952441816963,-0.0549927043858411,-0.0120066903957085,-0.705610957572016,0.258105652560107,0.0633536641840349,0.353422398324957,0.0424119340379503,0.15818016551091,0.0153480584347667,0.455178331646177,-0.238410690322269,0.169439015869463,0.005073903276758,-0.165659643494686,0.0389709420501062,-0.162648883028741,0.732801596222108,-0.135345671728161,-0.0885045118981926,-0.0684949048412161,0.024199613654653,0,0.0198035088625017,0.0666315210673354,0.251291531180834,-0.262403774853722,0,0.296032284000491,0.0502868617351396,0.0316768320920175,-0.409778475907751,-0.163797847795612,0.167660583822881,0,-0.142997335855831,0,0.0633536641840349,0,0.0751514902561923,0.118631122812508,0.242451583224224,-0.129467614131923,-0.065194977732664,0,0.111729657722316,0,-0.044795432120055,0.0633536641840349,0.180553303430511,0.10569412669711,0.162018847344704,0.0686583193228452,0.0241336424795142,-0.209782085172521,0.116043869952096,-0.046359573526495,0.160460675942346,0.263643954356609,-0.0665596390822941,0.189816707853283,0.216676951886934,-0.577227743986974,0.0441819068388323,-0.0881268324752877,0,0.201061581476028,0.729716089352665,0,0.165729957244283,0.0633536641840349,0.191355667648555,0,0.321934054787525,0.129319834526903,-0.231099889135352,-0.288729727318736,0.043827467407924,0.166797914364957,0,-0.180677383398619,-0.788130937773974,0,0,-0.012712001194052,0.802078247795346,0.0172935004882415,0.686908420695698,0.0488910632093298,-0.0131374446019424,0,-0.225423604195762,0,0,0.480503046383872,-0.0237639169611364,0,0.0403004024371098,-0.0635413873510532,-0.00389367785119243,-0.115971073434934,0.0633536641840349,0,0.0604545021322427,0,0,0.0429381777134881,-0.0289664352884496,0.384930783251432,-0.189972677302721,-0.0210845630762022,0.166529952362745,0,0,-0.177527765965176,0,-0.318510085472275,0,0,-0.0731700974363455,-0.116628112990133,0,0,0,-0.00394322065220404,0,0,0,0,0,0,0,-0.0443462558646257,0.150147966248615,0,0.101163627577403,0,0,0,0,0,-0.0452694846246618,0,0,-1.52897717463564,0.00189951967171908,0.088694705126832,0,0,0.0316768320920175,0,0.0359806216010299,0.0084755587085285,0.0633536641840349,-0.0685090423135968,0,0.059315561406254,0.251704024154505,0.0633536641840349,0.0324901330232965,0,0,0.059315561406254,0.0316768320920175,-0.057730457053664,-0.273066829248936,0,0,0,-0.213600737417756,0,0,0,0.0181098808108534,0.168801082209161,0,0,0,0,-0.0155732754060616,0.567284361984677,0,0.0738384160503488,-0.405377852945201,0.274471898416907,0,0.167660583822881,0.0607436493785464,0,0.0145400317963801,0.362503978301726,0,0,0.058495887990826,0,0,0,0,0.165892811982204,0,-0.214314512399756,0,0,0,0,0,0,0,0.118631122812508,0,0,0,-0.22807610632137,-0.0288703924744755,-0.0640596705171081,0,0,0,0,0,0,0.00757080901311435,0.092470886323585,0,0,0,0,0,0.0633536641840349,0,0,0.0543716110518465,0.0316768320920175,0,0,0,0,-0.0969923612426051,0,0,0,0.0633536641840349,-0.501453456969849,0,0,0.105282807617606,0,0,0,0,0,0,0.0616311289284046,0,0,0,0,0,0,0.198771695132986,-0.090622416907213,0,0.0633536641840349,0,0,0,0.118631122812508,0,-0.211479634022056,0,0,0,0,-0.0505307095249423,0,0,0,0.421001165925932,0,-0.160318030086386,0,0,0,0,0,0.192362398239189,0,0,0.118631122812508,0,0,0,0,0,0,0,0,0,0,0,0,-0.00606377923074275,0,-0.0859720976901192,-0.136530954607153,0.211712120803252,0,-0.173312791226788,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633536641840349,0,0,0,0,0,0,0.0227429249967298,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.3670066664589,0,0,0,0,0,0,-0.126931450072493,-0.283220399823148,-0.00103918623799804,0,0,0,0.276478704043919,0,0,0.0633536641840349,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.167660583822881,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118631122812508,0,0,0,0,0,0,0,0,0,-0.0899693461643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| |||
|rna_box=106 | |||
|rna_catalog_number= | |||
|rna_concentration=3.59788 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.73 | |||
|rna_od260/280=1.89 | |||
|rna_position=B9 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=106B9 | |||
|rna_weight_ug=89.947 | |||
|sample_age=74 | |||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0789 | |||
|sample_cell_line=HSQ-89 | |||
|sample_cell_lot= | |||
|sample_cell_type=unclassifiable | |||
|sample_collaboration=Yukio Nakamura (RIKEN BRC) | |||
|sample_company=RIKEN Bioresource centre | |||
|sample_description= | |||
|sample_dev_stage=74 year old adult | |||
|sample_disease=maxillary sinus tumor | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=J | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.18449122674741e-268!GO:0043226;organelle;5.98480880991115e-229!GO:0043229;intracellular organelle;6.25611591621362e-228!GO:0043231;intracellular membrane-bound organelle;1.77823761076705e-225!GO:0043227;membrane-bound organelle;1.77823761076705e-225!GO:0005737;cytoplasm;4.14482972928989e-156!GO:0044422;organelle part;8.73969236820713e-148!GO:0044446;intracellular organelle part;8.26124253185825e-146!GO:0005634;nucleus;1.38234515954413e-115!GO:0044444;cytoplasmic part;2.49069113374534e-106!GO:0044237;cellular metabolic process;3.25937588359356e-100!GO:0044238;primary metabolic process;7.60406873520198e-99!GO:0043170;macromolecule metabolic process;6.73309706369567e-98!GO:0032991;macromolecular complex;3.85331293440312e-96!GO:0003723;RNA binding;2.06971286695247e-89!GO:0030529;ribonucleoprotein complex;3.7980591074887e-88!GO:0044428;nuclear part;3.52562243990497e-84!GO:0043233;organelle lumen;2.78308027888523e-81!GO:0031974;membrane-enclosed lumen;2.78308027888523e-81!GO:0043283;biopolymer metabolic process;9.6844328395046e-71!GO:0010467;gene expression;3.15126725795789e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.65089243387112e-64!GO:0006396;RNA processing;1.58207716357572e-58!GO:0005739;mitochondrion;7.95734664029881e-56!GO:0031981;nuclear lumen;1.68601455111614e-53!GO:0005515;protein binding;2.52291936906778e-52!GO:0003676;nucleic acid binding;4.06670278579651e-52!GO:0005840;ribosome;1.772144959723e-49!GO:0006412;translation;2.50778415492537e-48!GO:0016043;cellular component organization and biogenesis;2.42950143401863e-47!GO:0043234;protein complex;1.14720378050081e-46!GO:0016071;mRNA metabolic process;2.20515196781443e-46!GO:0033036;macromolecule localization;2.17773389491935e-44!GO:0031090;organelle membrane;2.27136655861162e-44!GO:0015031;protein transport;1.03161238706808e-43!GO:0003735;structural constituent of ribosome;1.81431847677444e-42!GO:0019538;protein metabolic process;3.97340233680123e-42!GO:0008380;RNA splicing;8.25357514606749e-42!GO:0008104;protein localization;8.2596497030468e-40!GO:0016070;RNA metabolic process;1.91595835323367e-39!GO:0006397;mRNA processing;6.40290795660896e-39!GO:0045184;establishment of protein localization;1.24952419936541e-38!GO:0044429;mitochondrial part;1.43571464126717e-38!GO:0044267;cellular protein metabolic process;2.43974616075488e-38!GO:0033279;ribosomal subunit;7.61856166755506e-38!GO:0044260;cellular macromolecule metabolic process;1.33820172503488e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.3508427837431e-36!GO:0031967;organelle envelope;3.4270599056588e-36!GO:0031975;envelope;6.33621413499497e-36!GO:0006996;organelle organization and biogenesis;1.36733315726557e-35!GO:0046907;intracellular transport;1.84576799990819e-35!GO:0043228;non-membrane-bound organelle;5.16307773076069e-35!GO:0043232;intracellular non-membrane-bound organelle;5.16307773076069e-35!GO:0005654;nucleoplasm;1.6034088600126e-34!GO:0009059;macromolecule biosynthetic process;4.58830900353227e-34!GO:0044249;cellular biosynthetic process;1.52497298772053e-33!GO:0005829;cytosol;2.22306336189397e-33!GO:0065003;macromolecular complex assembly;9.40146714953247e-33!GO:0009058;biosynthetic process;2.85667559597329e-32!GO:0006259;DNA metabolic process;7.66865084923883e-32!GO:0000166;nucleotide binding;2.06463945614805e-29!GO:0022607;cellular component assembly;4.21501769477581e-29!GO:0044451;nucleoplasm part;4.42147997958784e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.62924933215732e-29!GO:0006886;intracellular protein transport;3.43626125129301e-28!GO:0005681;spliceosome;4.80728196819298e-28!GO:0051649;establishment of cellular localization;1.6026309676888e-26!GO:0051641;cellular localization;1.36363582902404e-25!GO:0005740;mitochondrial envelope;6.39161663419617e-24!GO:0016874;ligase activity;2.15065373500402e-23!GO:0019866;organelle inner membrane;3.40144017445501e-23!GO:0022618;protein-RNA complex assembly;1.11691209796285e-22!GO:0031966;mitochondrial membrane;2.84652754519466e-22!GO:0007049;cell cycle;4.83480560075558e-22!GO:0006511;ubiquitin-dependent protein catabolic process;4.95823518284492e-22!GO:0051603;proteolysis involved in cellular protein catabolic process;5.00717669897278e-22!GO:0019941;modification-dependent protein catabolic process;7.53006001029464e-22!GO:0043632;modification-dependent macromolecule catabolic process;7.53006001029464e-22!GO:0006512;ubiquitin cycle;1.09917417885593e-21!GO:0044257;cellular protein catabolic process;2.33384022296089e-21!GO:0044445;cytosolic part;2.38801546464027e-21!GO:0005743;mitochondrial inner membrane;2.38801546464027e-21!GO:0006457;protein folding;2.46053056206688e-21!GO:0005730;nucleolus;1.13196816795029e-20!GO:0015935;small ribosomal subunit;2.53351647429045e-20!GO:0044265;cellular macromolecule catabolic process;7.69258104040298e-20!GO:0051276;chromosome organization and biogenesis;1.54206680645258e-19!GO:0032553;ribonucleotide binding;1.83865319633108e-19!GO:0032555;purine ribonucleotide binding;1.83865319633108e-19!GO:0012505;endomembrane system;2.78919523118984e-19!GO:0043285;biopolymer catabolic process;3.53740280974137e-19!GO:0017076;purine nucleotide binding;5.87266200096605e-19!GO:0006119;oxidative phosphorylation;6.25717219782728e-19!GO:0015934;large ribosomal subunit;1.24842614037038e-18!GO:0008135;translation factor activity, nucleic acid binding;4.64690406539477e-18!GO:0032559;adenyl ribonucleotide binding;1.43914412969181e-17!GO:0005524;ATP binding;1.43930168725347e-17!GO:0006974;response to DNA damage stimulus;1.56688025461597e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.82358151301056e-17!GO:0016462;pyrophosphatase activity;2.04214280350812e-17!GO:0031980;mitochondrial lumen;2.17824191462688e-17!GO:0005759;mitochondrial matrix;2.17824191462688e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19753089429252e-17!GO:0005694;chromosome;3.26508742064215e-17!GO:0017111;nucleoside-triphosphatase activity;4.73888675323307e-17!GO:0030554;adenyl nucleotide binding;7.08024728010451e-17!GO:0043412;biopolymer modification;1.35109234245986e-16!GO:0008134;transcription factor binding;1.38923907430518e-16!GO:0030163;protein catabolic process;1.81364112697016e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;2.12114575089912e-16!GO:0044455;mitochondrial membrane part;4.23112161522521e-16!GO:0006323;DNA packaging;1.16094367927248e-15!GO:0009057;macromolecule catabolic process;1.36534372055439e-15!GO:0042254;ribosome biogenesis and assembly;2.58263607116606e-15!GO:0022402;cell cycle process;2.78446987056414e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.950433041076e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;8.8417348446042e-15!GO:0000375;RNA splicing, via transesterification reactions;8.8417348446042e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.8417348446042e-15!GO:0003743;translation initiation factor activity;8.85754964042015e-15!GO:0006281;DNA repair;1.09388819888247e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.15231714115065e-14!GO:0044427;chromosomal part;1.16732099271708e-14!GO:0005783;endoplasmic reticulum;2.67092226653391e-14!GO:0006366;transcription from RNA polymerase II promoter;2.91224935902884e-14!GO:0051082;unfolded protein binding;3.56873894492674e-14!GO:0006464;protein modification process;4.42368513262178e-14!GO:0016604;nuclear body;4.84313481881451e-14!GO:0006413;translational initiation;5.04581170855895e-14!GO:0048770;pigment granule;7.72960618716045e-14!GO:0042470;melanosome;7.72960618716045e-14!GO:0006605;protein targeting;1.12613368260314e-13!GO:0048193;Golgi vesicle transport;2.41303679682309e-13!GO:0005746;mitochondrial respiratory chain;3.57480063721969e-13!GO:0044432;endoplasmic reticulum part;4.35384549824083e-13!GO:0004386;helicase activity;4.97504468991715e-13!GO:0005635;nuclear envelope;5.82311180153266e-13!GO:0044248;cellular catabolic process;7.22398523771147e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.34789638209684e-13!GO:0016887;ATPase activity;1.01070628097339e-12!GO:0000278;mitotic cell cycle;1.38892543749823e-12!GO:0005761;mitochondrial ribosome;1.55647392493198e-12!GO:0000313;organellar ribosome;1.55647392493198e-12!GO:0043687;post-translational protein modification;1.57166538903977e-12!GO:0031965;nuclear membrane;2.0824380503584e-12!GO:0016607;nuclear speck;2.36803180286078e-12!GO:0019222;regulation of metabolic process;2.68491480922803e-12!GO:0044453;nuclear membrane part;3.58185702692813e-12!GO:0006399;tRNA metabolic process;3.62260250686017e-12!GO:0003712;transcription cofactor activity;3.9275587850509e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.48216150576587e-12!GO:0042623;ATPase activity, coupled;5.02838406014893e-12!GO:0016568;chromatin modification;5.17177827769485e-12!GO:0006446;regulation of translational initiation;5.46915740251033e-12!GO:0050136;NADH dehydrogenase (quinone) activity;6.32223913340285e-12!GO:0003954;NADH dehydrogenase activity;6.32223913340285e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.32223913340285e-12!GO:0051186;cofactor metabolic process;6.74698895114621e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.5290295320199e-11!GO:0008639;small protein conjugating enzyme activity;1.68977835986148e-11!GO:0050657;nucleic acid transport;2.06709797452607e-11!GO:0051236;establishment of RNA localization;2.06709797452607e-11!GO:0050658;RNA transport;2.06709797452607e-11!GO:0006403;RNA localization;2.15960489788863e-11!GO:0016192;vesicle-mediated transport;2.46605379858016e-11!GO:0051301;cell division;2.56655687894907e-11!GO:0005643;nuclear pore;3.53541428649552e-11!GO:0004842;ubiquitin-protein ligase activity;3.81772512376354e-11!GO:0015630;microtubule cytoskeleton;4.62033318059392e-11!GO:0006350;transcription;5.44444087356884e-11!GO:0008026;ATP-dependent helicase activity;5.62343040459492e-11!GO:0006260;DNA replication;7.25989692965259e-11!GO:0005794;Golgi apparatus;9.71030011288359e-11!GO:0009719;response to endogenous stimulus;1.0562279196534e-10!GO:0019787;small conjugating protein ligase activity;1.40805067579315e-10!GO:0006913;nucleocytoplasmic transport;1.41068195994652e-10!GO:0016881;acid-amino acid ligase activity;2.0231845825959e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.31539335395301e-10!GO:0042773;ATP synthesis coupled electron transport;2.31539335395301e-10!GO:0051169;nuclear transport;3.39998395582529e-10!GO:0031323;regulation of cellular metabolic process;3.52604465549298e-10!GO:0006732;coenzyme metabolic process;3.5427224826096e-10!GO:0022403;cell cycle phase;5.30854468816066e-10!GO:0030964;NADH dehydrogenase complex (quinone);5.97728401115412e-10!GO:0045271;respiratory chain complex I;5.97728401115412e-10!GO:0005747;mitochondrial respiratory chain complex I;5.97728401115412e-10!GO:0065002;intracellular protein transport across a membrane;6.00498094020465e-10!GO:0000087;M phase of mitotic cell cycle;6.09408533845932e-10!GO:0008565;protein transporter activity;6.13289246837045e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.46919117904584e-10!GO:0000785;chromatin;1.09934191523716e-09!GO:0005667;transcription factor complex;1.25718199568907e-09!GO:0007067;mitosis;1.31820199996364e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.33605698132831e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.33605698132831e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.33605698132831e-09!GO:0065004;protein-DNA complex assembly;1.33605698132831e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.35866987275772e-09!GO:0050794;regulation of cellular process;1.59526389240699e-09!GO:0010468;regulation of gene expression;1.63788034146695e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.6485343884292e-09!GO:0016072;rRNA metabolic process;1.93640496174245e-09!GO:0051028;mRNA transport;2.10770182936706e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.21302693529499e-09!GO:0005789;endoplasmic reticulum membrane;2.44541068304075e-09!GO:0006364;rRNA processing;2.85851679550388e-09!GO:0043038;amino acid activation;4.17427996918789e-09!GO:0006418;tRNA aminoacylation for protein translation;4.17427996918789e-09!GO:0043039;tRNA aminoacylation;4.17427996918789e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.6885721142424e-09!GO:0006333;chromatin assembly or disassembly;5.42669661599942e-09!GO:0032774;RNA biosynthetic process;6.8054701683925e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.94636494964049e-09!GO:0006351;transcription, DNA-dependent;8.17189777564697e-09!GO:0000279;M phase;8.35464823840403e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23144258176961e-08!GO:0046930;pore complex;1.31581047563667e-08!GO:0032446;protein modification by small protein conjugation;1.43468893389704e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.86282531780595e-08!GO:0016567;protein ubiquitination;1.98408593795584e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.46370833256369e-08!GO:0006163;purine nucleotide metabolic process;2.48335111605134e-08!GO:0009259;ribonucleotide metabolic process;3.08259796290502e-08!GO:0005793;ER-Golgi intermediate compartment;3.93962750359353e-08!GO:0006164;purine nucleotide biosynthetic process;4.50712815724929e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.7161170445862e-08!GO:0009055;electron carrier activity;5.80785083263757e-08!GO:0015986;ATP synthesis coupled proton transport;6.06374059319022e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.06374059319022e-08!GO:0006461;protein complex assembly;7.54057072998917e-08!GO:0005768;endosome;8.71429181574106e-08!GO:0000151;ubiquitin ligase complex;8.72252498885969e-08!GO:0000245;spliceosome assembly;9.93825992841673e-08!GO:0009260;ribonucleotide biosynthetic process;1.00915453152859e-07!GO:0009150;purine ribonucleotide metabolic process;1.20463499713874e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.28871662629532e-07!GO:0045449;regulation of transcription;1.74939138521882e-07!GO:0007005;mitochondrion organization and biogenesis;1.971008964541e-07!GO:0043566;structure-specific DNA binding;2.01933746520704e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.1854108806967e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.7567131493636e-07!GO:0009060;aerobic respiration;2.7650796817002e-07!GO:0019829;cation-transporting ATPase activity;2.7650796817002e-07!GO:0016564;transcription repressor activity;2.77366581408541e-07!GO:0005813;centrosome;2.92231381447764e-07!GO:0051188;cofactor biosynthetic process;2.99303299824983e-07!GO:0009141;nucleoside triphosphate metabolic process;3.27904124551454e-07!GO:0017038;protein import;3.77496128595787e-07!GO:0016740;transferase activity;3.95620351053149e-07!GO:0045333;cellular respiration;4.18401153149064e-07!GO:0051726;regulation of cell cycle;5.52575169768186e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.52798963885587e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.17980242656278e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.17980242656278e-07!GO:0000074;regulation of progression through cell cycle;7.48876384130981e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.68303054190172e-07!GO:0006754;ATP biosynthetic process;9.31790371645348e-07!GO:0006753;nucleoside phosphate metabolic process;9.31790371645348e-07!GO:0005815;microtubule organizing center;9.41517641760877e-07!GO:0016779;nucleotidyltransferase activity;1.0519675448877e-06!GO:0006355;regulation of transcription, DNA-dependent;1.0519675448877e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.2379097325181e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.2379097325181e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.4923873221454e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.4923873221454e-06!GO:0046034;ATP metabolic process;1.7408341520009e-06!GO:0003677;DNA binding;2.06530328446436e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.37098349079463e-06!GO:0009056;catabolic process;2.42002843085013e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.57019009325966e-06!GO:0003697;single-stranded DNA binding;2.7267899983423e-06!GO:0044431;Golgi apparatus part;2.82452054329264e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82452054329264e-06!GO:0009108;coenzyme biosynthetic process;2.83619129117908e-06!GO:0006613;cotranslational protein targeting to membrane;3.43970823575035e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.02265760051297e-06!GO:0003724;RNA helicase activity;4.36143650675985e-06!GO:0006915;apoptosis;4.38481366891219e-06!GO:0012501;programmed cell death;4.70961394505747e-06!GO:0048475;coated membrane;5.43177359238166e-06!GO:0030117;membrane coat;5.43177359238166e-06!GO:0051168;nuclear export;7.11189686407763e-06!GO:0003714;transcription corepressor activity;7.54948368599503e-06!GO:0016563;transcription activator activity;8.00377249588297e-06!GO:0003713;transcription coactivator activity;8.09004445786862e-06!GO:0006099;tricarboxylic acid cycle;9.9469131220804e-06!GO:0046356;acetyl-CoA catabolic process;9.9469131220804e-06!GO:0006793;phosphorus metabolic process;9.9513144876152e-06!GO:0006796;phosphate metabolic process;9.9513144876152e-06!GO:0031324;negative regulation of cellular metabolic process;1.01476797069074e-05!GO:0006261;DNA-dependent DNA replication;1.04974670062562e-05!GO:0045259;proton-transporting ATP synthase complex;1.13719189590588e-05!GO:0050789;regulation of biological process;1.19067542292305e-05!GO:0006752;group transfer coenzyme metabolic process;1.32456893206481e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.32648013034023e-05!GO:0045045;secretory pathway;1.44759130430068e-05!GO:0009892;negative regulation of metabolic process;1.48087543247714e-05!GO:0016481;negative regulation of transcription;1.5665294100562e-05!GO:0006334;nucleosome assembly;1.68943177310288e-05!GO:0044440;endosomal part;1.70407205639681e-05!GO:0010008;endosome membrane;1.70407205639681e-05!GO:0030120;vesicle coat;1.74119113109527e-05!GO:0030662;coated vesicle membrane;1.74119113109527e-05!GO:0006084;acetyl-CoA metabolic process;1.74119113109527e-05!GO:0003702;RNA polymerase II transcription factor activity;1.86880212755932e-05!GO:0005874;microtubule;1.97273289361676e-05!GO:0005788;endoplasmic reticulum lumen;1.99695705019852e-05!GO:0006402;mRNA catabolic process;3.00643645758174e-05!GO:0043623;cellular protein complex assembly;3.17016678132614e-05!GO:0003682;chromatin binding;3.54914107247039e-05!GO:0008219;cell death;3.94807610864894e-05!GO:0016265;death;3.94807610864894e-05!GO:0043021;ribonucleoprotein binding;3.9824074957109e-05!GO:0031497;chromatin assembly;4.70715868895469e-05!GO:0016310;phosphorylation;6.12912156559898e-05!GO:0031988;membrane-bound vesicle;6.2752680430044e-05!GO:0000139;Golgi membrane;6.53446781373861e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.82164284005234e-05!GO:0031982;vesicle;6.83951365676641e-05!GO:0003899;DNA-directed RNA polymerase activity;7.14979118776769e-05!GO:0051170;nuclear import;7.6997329780779e-05!GO:0005819;spindle;7.90065246089532e-05!GO:0005798;Golgi-associated vesicle;8.44069453201826e-05!GO:0000314;organellar small ribosomal subunit;8.65975863298816e-05!GO:0005763;mitochondrial small ribosomal subunit;8.65975863298816e-05!GO:0006612;protein targeting to membrane;8.71699385958657e-05!GO:0009109;coenzyme catabolic process;8.74973698888945e-05!GO:0004674;protein serine/threonine kinase activity;8.80614308673659e-05!GO:0051246;regulation of protein metabolic process;9.71503399031304e-05!GO:0016859;cis-trans isomerase activity;9.77336975291901e-05!GO:0009117;nucleotide metabolic process;9.8586058855681e-05!GO:0008654;phospholipid biosynthetic process;0.000100455440211956!GO:0000049;tRNA binding;0.000114682207909541!GO:0008033;tRNA processing;0.000116493581154966!GO:0031072;heat shock protein binding;0.000117571949787836!GO:0006401;RNA catabolic process;0.000117967979300029!GO:0016023;cytoplasmic membrane-bound vesicle;0.000118855339820214!GO:0006352;transcription initiation;0.000122610087800631!GO:0051789;response to protein stimulus;0.000123710509699834!GO:0006986;response to unfolded protein;0.000123710509699834!GO:0003729;mRNA binding;0.000126555901351825!GO:0008186;RNA-dependent ATPase activity;0.000146806543429346!GO:0005770;late endosome;0.000152577663535199!GO:0031410;cytoplasmic vesicle;0.000166351632277955!GO:0006606;protein import into nucleus;0.000174151804186557!GO:0004576;oligosaccharyl transferase activity;0.000191425410436857!GO:0044452;nucleolar part;0.000210527259138085!GO:0005769;early endosome;0.000214053496922735!GO:0016853;isomerase activity;0.000219161692382802!GO:0030867;rough endoplasmic reticulum membrane;0.000231722554174716!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000235340596268345!GO:0051187;cofactor catabolic process;0.000248474954105468!GO:0003690;double-stranded DNA binding;0.000256605845587209!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000264777930069097!GO:0008250;oligosaccharyl transferase complex;0.000267946417996352!GO:0019783;small conjugating protein-specific protease activity;0.000276381427398388!GO:0007017;microtubule-based process;0.000280826429084412!GO:0051427;hormone receptor binding;0.000299078915602423!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000343673294554594!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.000380571727310598!GO:0007051;spindle organization and biogenesis;0.000395256037845273!GO:0045454;cell redox homeostasis;0.000397374857796925!GO:0000775;chromosome, pericentric region;0.000399984675501151!GO:0004843;ubiquitin-specific protease activity;0.000423634971445099!GO:0004004;ATP-dependent RNA helicase activity;0.000448758902515444!GO:0006916;anti-apoptosis;0.000460620744635143!GO:0016251;general RNA polymerase II transcription factor activity;0.000485615182826197!GO:0033116;ER-Golgi intermediate compartment membrane;0.000493933076607937!GO:0048523;negative regulation of cellular process;0.000552851799444357!GO:0035257;nuclear hormone receptor binding;0.000560154546838608!GO:0016363;nuclear matrix;0.000568447888091246!GO:0005762;mitochondrial large ribosomal subunit;0.000606480610574052!GO:0000315;organellar large ribosomal subunit;0.000606480610574052!GO:0004221;ubiquitin thiolesterase activity;0.000629058229987844!GO:0043069;negative regulation of programmed cell death;0.000638807919773586!GO:0015631;tubulin binding;0.000641355978149679!GO:0006383;transcription from RNA polymerase III promoter;0.000663386956152949!GO:0043066;negative regulation of apoptosis;0.000684809092840192!GO:0005657;replication fork;0.000702663459452341!GO:0005525;GTP binding;0.000721510177361933!GO:0006302;double-strand break repair;0.000755108453181233!GO:0006338;chromatin remodeling;0.000833858486708796!GO:0006818;hydrogen transport;0.000838698951345298!GO:0045892;negative regulation of transcription, DNA-dependent;0.000844575109819039!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000875014352727277!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000876989729888649!GO:0006839;mitochondrial transport;0.00094288138992057!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00100287919822518!GO:0000059;protein import into nucleus, docking;0.00102370562828353!GO:0016741;transferase activity, transferring one-carbon groups;0.00105379485260007!GO:0015992;proton transport;0.00106813960420754!GO:0048500;signal recognition particle;0.00114427350559424!GO:0019899;enzyme binding;0.00119534984922894!GO:0030880;RNA polymerase complex;0.00120981219890671!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121133874028815!GO:0005839;proteasome core complex (sensu Eukaryota);0.00122857730014328!GO:0008168;methyltransferase activity;0.00128089818740621!GO:0051252;regulation of RNA metabolic process;0.00141063612959801!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0014351618864323!GO:0042981;regulation of apoptosis;0.00144319311353166!GO:0051920;peroxiredoxin activity;0.00144589076369746!GO:0043681;protein import into mitochondrion;0.00145716420070973!GO:0046474;glycerophospholipid biosynthetic process;0.00149944047247407!GO:0051052;regulation of DNA metabolic process;0.00156651167066476!GO:0016790;thiolester hydrolase activity;0.00157523481343775!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0016915415477415!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0016915415477415!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0016915415477415!GO:0006414;translational elongation;0.00173776974108339!GO:0031252;leading edge;0.00173776974108339!GO:0007006;mitochondrial membrane organization and biogenesis;0.00182128940604016!GO:0045786;negative regulation of progression through cell cycle;0.00183830647828915!GO:0051329;interphase of mitotic cell cycle;0.00191813341864136!GO:0022890;inorganic cation transmembrane transporter activity;0.00196085466023004!GO:0003924;GTPase activity;0.00198111393140119!GO:0005048;signal sequence binding;0.00198503893827045!GO:0043067;regulation of programmed cell death;0.00201670583305881!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00205286417774035!GO:0000428;DNA-directed RNA polymerase complex;0.00205286417774035!GO:0006891;intra-Golgi vesicle-mediated transport;0.00205556701071847!GO:0016787;hydrolase activity;0.002077487225774!GO:0007052;mitotic spindle organization and biogenesis;0.00213867472306628!GO:0000776;kinetochore;0.00220438931973099!GO:0004298;threonine endopeptidase activity;0.00220518273096112!GO:0046489;phosphoinositide biosynthetic process;0.00225640864186994!GO:0006405;RNA export from nucleus;0.00225640864186994!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00241813341016754!GO:0015399;primary active transmembrane transporter activity;0.00241813341016754!GO:0015980;energy derivation by oxidation of organic compounds;0.00241813341016754!GO:0006626;protein targeting to mitochondrion;0.00243152808426216!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00279913917898567!GO:0008022;protein C-terminus binding;0.00282755022091968!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00286076883311519!GO:0045047;protein targeting to ER;0.00286076883311519!GO:0008312;7S RNA binding;0.00288620399325115!GO:0019843;rRNA binding;0.00297284544891859!GO:0007010;cytoskeleton organization and biogenesis;0.00304015478416287!GO:0006611;protein export from nucleus;0.00312996603166134!GO:0018196;peptidyl-asparagine modification;0.00312996603166134!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00312996603166134!GO:0032561;guanyl ribonucleotide binding;0.00326558488878163!GO:0019001;guanyl nucleotide binding;0.00326558488878163!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332838894372938!GO:0043488;regulation of mRNA stability;0.00333531092613825!GO:0043487;regulation of RNA stability;0.00333531092613825!GO:0006984;ER-nuclear signaling pathway;0.00334546078974152!GO:0032940;secretion by cell;0.00351844417651973!GO:0000096;sulfur amino acid metabolic process;0.00358704882269813!GO:0008270;zinc ion binding;0.00370952699764261!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00377212245625482!GO:0042802;identical protein binding;0.00392226412728409!GO:0051087;chaperone binding;0.0040061909049773!GO:0003711;transcription elongation regulator activity;0.0041644515262412!GO:0005684;U2-dependent spliceosome;0.00418790201930325!GO:0005773;vacuole;0.00422508126346168!GO:0005669;transcription factor TFIID complex;0.00448791006571283!GO:0003684;damaged DNA binding;0.00450991431291735!GO:0030133;transport vesicle;0.00459675865888474!GO:0030134;ER to Golgi transport vesicle;0.00460695592766982!GO:0048487;beta-tubulin binding;0.00466614238143249!GO:0006607;NLS-bearing substrate import into nucleus;0.00491321000034197!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00491996147224691!GO:0032508;DNA duplex unwinding;0.00509475980631894!GO:0032392;DNA geometric change;0.00509475980631894!GO:0000118;histone deacetylase complex;0.00521463153166034!GO:0009165;nucleotide biosynthetic process;0.00551931223338841!GO:0008234;cysteine-type peptidase activity;0.00554956958968788!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00554956958968788!GO:0000786;nucleosome;0.00554956958968788!GO:0016272;prefoldin complex;0.00569337009510356!GO:0019867;outer membrane;0.00571657461844691!GO:0008276;protein methyltransferase activity;0.00584673214730693!GO:0048471;perinuclear region of cytoplasm;0.00620218325021322!GO:0005791;rough endoplasmic reticulum;0.00623071096168084!GO:0051325;interphase;0.00654328245519244!GO:0008017;microtubule binding;0.0066758852325618!GO:0030127;COPII vesicle coat;0.00677419016102305!GO:0012507;ER to Golgi transport vesicle membrane;0.00677419016102305!GO:0016584;nucleosome positioning;0.00680494001235219!GO:0045893;positive regulation of transcription, DNA-dependent;0.00680494001235219!GO:0031968;organelle outer membrane;0.00691747031431652!GO:0005741;mitochondrial outer membrane;0.00693992758944917!GO:0043022;ribosome binding;0.00723659925117602!GO:0045941;positive regulation of transcription;0.00740385011946442!GO:0005637;nuclear inner membrane;0.00758830372409091!GO:0030658;transport vesicle membrane;0.0076814956856784!GO:0031970;organelle envelope lumen;0.00772415330392056!GO:0005885;Arp2/3 protein complex;0.00773718105946359!GO:0030521;androgen receptor signaling pathway;0.00774476517573005!GO:0008094;DNA-dependent ATPase activity;0.0078567302885028!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00797106335739084!GO:0006650;glycerophospholipid metabolic process;0.00804677522758437!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0084528845219228!GO:0006376;mRNA splice site selection;0.00894409297750183!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00894409297750183!GO:0030176;integral to endoplasmic reticulum membrane;0.00895764882081487!GO:0003678;DNA helicase activity;0.00901609100055041!GO:0030118;clathrin coat;0.00903628526632976!GO:0032200;telomere organization and biogenesis;0.00939113014546418!GO:0000723;telomere maintenance;0.00939113014546418!GO:0000339;RNA cap binding;0.00969768983365333!GO:0009451;RNA modification;0.0097731965652497!GO:0008652;amino acid biosynthetic process;0.0098761980385305!GO:0022406;membrane docking;0.0101216447744553!GO:0048278;vesicle docking;0.0101216447744553!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0101349960382965!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0101349960382965!GO:0030663;COPI coated vesicle membrane;0.0101836911496173!GO:0030126;COPI vesicle coat;0.0101836911496173!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0102356834723532!GO:0006144;purine base metabolic process;0.0104551193111559!GO:0016197;endosome transport;0.0105254316420866!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0106002958506194!GO:0048519;negative regulation of biological process;0.0109571179244197!GO:0005832;chaperonin-containing T-complex;0.0110055476565014!GO:0016579;protein deubiquitination;0.0111774432068662!GO:0043414;biopolymer methylation;0.0114419974493835!GO:0035258;steroid hormone receptor binding;0.0114613402279885!GO:0008097;5S rRNA binding;0.0117529799166863!GO:0004527;exonuclease activity;0.011992890238193!GO:0000922;spindle pole;0.0121735341190305!GO:0030968;unfolded protein response;0.0124302045737798!GO:0000075;cell cycle checkpoint;0.0125796318189009!GO:0006284;base-excision repair;0.0128012081423137!GO:0006268;DNA unwinding during replication;0.0128494742144126!GO:0030384;phosphoinositide metabolic process;0.0128784218032311!GO:0006506;GPI anchor biosynthetic process;0.0129342295183252!GO:0006595;polyamine metabolic process;0.0131380166036827!GO:0046467;membrane lipid biosynthetic process;0.0132579868987379!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0133712080387685!GO:0006904;vesicle docking during exocytosis;0.0139400166420139!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0142379332795238!GO:0043492;ATPase activity, coupled to movement of substances;0.0142778268186187!GO:0008139;nuclear localization sequence binding;0.0143047730948611!GO:0016491;oxidoreductase activity;0.01482778494617!GO:0030518;steroid hormone receptor signaling pathway;0.0150576630156165!GO:0030660;Golgi-associated vesicle membrane;0.0150576630156165!GO:0040029;regulation of gene expression, epigenetic;0.015492386734972!GO:0006505;GPI anchor metabolic process;0.0155405425266332!GO:0008092;cytoskeletal protein binding;0.0160363638748295!GO:0042393;histone binding;0.0161402854441411!GO:0005665;DNA-directed RNA polymerase II, core complex;0.016759496453923!GO:0000228;nuclear chromosome;0.0168302114165869!GO:0007004;telomere maintenance via telomerase;0.0169261233684736!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0169856060816833!GO:0045603;positive regulation of endothelial cell differentiation;0.0170976107528442!GO:0051128;regulation of cellular component organization and biogenesis;0.0171171665811587!GO:0031124;mRNA 3'-end processing;0.0171547690245443!GO:0006091;generation of precursor metabolites and energy;0.0172010257201245!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0173743897881716!GO:0006400;tRNA modification;0.0175231249343146!GO:0007264;small GTPase mediated signal transduction;0.0175332435509834!GO:0005758;mitochondrial intermembrane space;0.0176016325753495!GO:0000287;magnesium ion binding;0.01766178923592!GO:0003746;translation elongation factor activity;0.0177172507707864!GO:0003756;protein disulfide isomerase activity;0.0179026400277222!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0179026400277222!GO:0006497;protein amino acid lipidation;0.0180133107719318!GO:0006310;DNA recombination;0.0180943866914739!GO:0008601;protein phosphatase type 2A regulator activity;0.0182634926450153!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0185692518727694!GO:0046983;protein dimerization activity;0.0190582711413123!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0192870294333843!GO:0016301;kinase activity;0.0195670908711298!GO:0032259;methylation;0.0199468953320256!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0210436874421977!GO:0046483;heterocycle metabolic process;0.0210436874421977!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0213364298946987!GO:0015002;heme-copper terminal oxidase activity;0.0213364298946987!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0213364298946987!GO:0004129;cytochrome-c oxidase activity;0.0213364298946987!GO:0050662;coenzyme binding;0.0214206438886717!GO:0030433;ER-associated protein catabolic process;0.0214206438886717!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0214206438886717!GO:0007059;chromosome segregation;0.0214206438886717!GO:0045815;positive regulation of gene expression, epigenetic;0.0215132520654888!GO:0030027;lamellipodium;0.0218263940445331!GO:0005875;microtubule associated complex;0.0220312964611328!GO:0008287;protein serine/threonine phosphatase complex;0.0228726508107852!GO:0000323;lytic vacuole;0.0228726508107852!GO:0005764;lysosome;0.0228726508107852!GO:0008408;3'-5' exonuclease activity;0.0231681229034907!GO:0065007;biological regulation;0.0235720167031131!GO:0030137;COPI-coated vesicle;0.0237773595270684!GO:0006892;post-Golgi vesicle-mediated transport;0.0239001049935453!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0239977609032912!GO:0051287;NAD binding;0.0242934318249411!GO:0006740;NADPH regeneration;0.0247209273951989!GO:0006098;pentose-phosphate shunt;0.0247209273951989!GO:0008637;apoptotic mitochondrial changes;0.0254786404998985!GO:0003727;single-stranded RNA binding;0.0254786404998985!GO:0009112;nucleobase metabolic process;0.0255975827011286!GO:0006289;nucleotide-excision repair;0.0257995595551011!GO:0046914;transition metal ion binding;0.0258278882071345!GO:0043624;cellular protein complex disassembly;0.0260996855156764!GO:0005844;polysome;0.026517254909085!GO:0019752;carboxylic acid metabolic process;0.0268504375092874!GO:0009303;rRNA transcription;0.027760763035955!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0284707344315466!GO:0004532;exoribonuclease activity;0.0288239201608575!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0288239201608575!GO:0005784;translocon complex;0.0289816428504521!GO:0031902;late endosome membrane;0.0296972759422954!GO:0032984;macromolecular complex disassembly;0.0297006114147732!GO:0000209;protein polyubiquitination;0.0298392792475685!GO:0006082;organic acid metabolic process;0.0301780028682236!GO:0006378;mRNA polyadenylation;0.0306096612899924!GO:0006278;RNA-dependent DNA replication;0.0307146196123198!GO:0008180;signalosome;0.0309974003495319!GO:0035267;NuA4 histone acetyltransferase complex;0.0321541069356055!GO:0050811;GABA receptor binding;0.0339957186622273!GO:0009116;nucleoside metabolic process;0.0343719243980153!GO:0030503;regulation of cell redox homeostasis;0.034443770874508!GO:0000159;protein phosphatase type 2A complex;0.035488418974219!GO:0009081;branched chain family amino acid metabolic process;0.035549057541426!GO:0044454;nuclear chromosome part;0.035549057541426!GO:0006860;extracellular amino acid transport;0.0357690846583997!GO:0012506;vesicle membrane;0.0357690846583997!GO:0007569;cell aging;0.0368692570088488!GO:0006520;amino acid metabolic process;0.0368692570088488!GO:0003725;double-stranded RNA binding;0.036914990868779!GO:0016018;cyclosporin A binding;0.0370245862994475!GO:0000726;non-recombinational repair;0.0373058652894927!GO:0032906;transforming growth factor-beta2 production;0.0373427448982009!GO:0032909;regulation of transforming growth factor-beta2 production;0.0373427448982009!GO:0005905;coated pit;0.0373427448982009!GO:0043596;nuclear replication fork;0.0373487048644396!GO:0005876;spindle microtubule;0.0380399344487745!GO:0004518;nuclease activity;0.039722998208616!GO:0000152;nuclear ubiquitin ligase complex;0.0397810694516833!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0402959588115791!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0411291932626999!GO:0000792;heterochromatin;0.0411908873745277!GO:0008632;apoptotic program;0.0415638930146068!GO:0043189;H4/H2A histone acetyltransferase complex;0.0422706425305869!GO:0046982;protein heterodimerization activity;0.0422987197610724!GO:0000738;DNA catabolic process, exonucleolytic;0.0423320958352679!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0423320958352679!GO:0030119;AP-type membrane coat adaptor complex;0.0424025067840478!GO:0006301;postreplication repair;0.0426131532106021!GO:0044433;cytoplasmic vesicle part;0.0431755657452992!GO:0043130;ubiquitin binding;0.043534700696304!GO:0032182;small conjugating protein binding;0.043534700696304!GO:0042158;lipoprotein biosynthetic process;0.0437168267684694!GO:0031123;RNA 3'-end processing;0.0444712148387779!GO:0008536;Ran GTPase binding;0.0448620781383612!GO:0007093;mitotic cell cycle checkpoint;0.0448714998414692!GO:0043241;protein complex disassembly;0.0453518277884005!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0455224887245981!GO:0065009;regulation of a molecular function;0.0475508383302806!GO:0000781;chromosome, telomeric region;0.0476188742746314!GO:0006672;ceramide metabolic process;0.0493048265850183!GO:0005869;dynactin complex;0.0495221293760312!GO:0031625;ubiquitin protein ligase binding;0.0495407758906947!GO:0030036;actin cytoskeleton organization and biogenesis;0.0495554208480988!GO:0031371;ubiquitin conjugating enzyme complex;0.0497671960636814 | |||
|sample_id=10414 | |||
|sample_note=machine failed, remainder reloaded, low amount | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=sinus | |||
|top_motifs=LEF1_TCF7_TCF7L1,2:3.6878587106;SNAI1..3:2.18253750219;ZEB1:2.18048013125;LMO2:1.97565533715;FOXN1:1.87286132187;ELK1,4_GABP{A,B1}:1.72573251821;bHLH_family:1.71002556975;SOX2:1.44863769332;NRF1:1.44547320478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.36374674548;VSX1,2:1.30352883814;RORA:1.27182096818;NKX6-1,2:1.27069813054;AHR_ARNT_ARNT2:1.21005165098;FOX{F1,F2,J1}:1.18630915443;ZNF143:1.17264258923;RFX1:1.14821171191;MYOD1:1.12891002328;RFX2..5_RFXANK_RFXAP:1.10926440161;NFIX:1.08286102539;SOX17:1.07432865147;NFY{A,B,C}:1.06901605083;FOXO1,3,4:1.06552353333;ATF4:1.06094498768;PAX8:1.02628659123;TFDP1:1.01743726695;HIF1A:1.01682400743;AIRE:1.0089332571;ADNP_IRX_SIX_ZHX:0.976385101819;HAND1,2:0.958641884623;FOX{I1,J2}:0.893096141476;XBP1:0.890119502128;NKX2-3_NKX2-5:0.870353498503;LHX3,4:0.859114348449;SOX{8,9,10}:0.850015946345;TFAP2B:0.80370800121;SP1:0.803281182908;PITX1..3:0.797762752719;GFI1:0.79079102302;T:0.767847641088;NKX2-1,4:0.69704654423;TFAP2{A,C}:0.693201984022;ZFP161:0.525457560457;BREu{core}:0.512350211546;NANOG:0.508360892485;XCPE1{core}:0.501564809843;FOXA2:0.49643226018;FOXP1:0.493548444346;PRRX1,2:0.474270958716;MED-1{core}:0.47178059273;MYB:0.45589992041;CRX:0.453317377709;BPTF:0.430583311259;ATF6:0.418559142806;SREBF1,2:0.410110650307;FOX{D1,D2}:0.402783844296;ATF5_CREB3:0.391585222327;E2F1..5:0.387184945735;NKX3-2:0.37990053445;MTE{core}:0.33051214499;RBPJ:0.324907024871;CDC5L:0.317028171493;ALX1:0.316152220827;STAT1,3:0.283452900195;ZBTB16:0.269439784841;TEF:0.266661629811;PATZ1:0.264573582689;NR6A1:0.213611340165;CREB1:0.166180970107;NFE2:0.161126775692;CUX2:0.15771583549;OCT4_SOX2{dimer}:0.147132494857;ATF2:0.120026854745;CEBPA,B_DDIT3:0.0906787447345;HNF1A:0.0906694818066;NFE2L2:0.0849796030179;CDX1,2,4:0.0832176813991;PBX1:0.0814288576345;HOXA9_MEIS1:0.0660948933103;ARID5B:0.0622929340339;HNF4A_NR2F1,2:0.0593381673777;PAX2:0.0499079750925;EGR1..3:0.0305382895963;POU5F1:0.0243410373573;HIC1:0.00743923779732;YY1:-0.00088247679353;ONECUT1,2:-0.00876050235469;PDX1:-0.0232638924145;STAT5{A,B}:-0.0273064397159;DBP:-0.0417767670659;HLF:-0.0524128524695;NHLH1,2:-0.0711949258452;FOXQ1:-0.0948101747543;TP53:-0.0979707865538;PAX5:-0.106870562482;POU6F1:-0.127835187073;ELF1,2,4:-0.148183210095;GTF2A1,2:-0.153063564399;TOPORS:-0.160205513135;MTF1:-0.179187008324;TGIF1:-0.181327243767;HOX{A4,D4}:-0.181533090017;FOXM1:-0.188297918003;JUN:-0.197891488788;GTF2I:-0.220028161906;REST:-0.225349390074;MEF2{A,B,C,D}:-0.225950203667;FOSL2:-0.227272703333;BACH2:-0.228038626654;HOX{A6,A7,B6,B7}:-0.231952703637;GFI1B:-0.233331817517;POU2F1..3:-0.240521578879;MYFfamily:-0.243442900346;POU1F1:-0.243511187221;TBX4,5:-0.275626399476;FOXD3:-0.286118011851;NKX2-2,8:-0.29939519102;FOS_FOS{B,L1}_JUN{B,D}:-0.302133942982;IKZF2:-0.34458505388;SOX5:-0.348264695932;EBF1:-0.348446081527;ZNF423:-0.372377665367;HOX{A5,B5}:-0.376240461687;EVI1:-0.390941449565;TEAD1:-0.416915398028;RREB1:-0.424302624919;HSF1,2:-0.427832950991;PAX4:-0.436518518174;EN1,2:-0.440987849189;MYBL2:-0.448519544894;POU3F1..4:-0.454401535936;MAFB:-0.454571961646;ZNF148:-0.464533476221;GZF1:-0.477413720172;TAL1_TCF{3,4,12}:-0.495487339216;AR:-0.495505283778;NFIL3:-0.502122136386;HBP1_HMGB_SSRP1_UBTF:-0.507783996753;SPIB:-0.508355160839;TLX2:-0.520418431877;NFKB1_REL_RELA:-0.534441493179;PAX3,7:-0.543646446592;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548028350714;NR5A1,2:-0.578106859981;TLX1..3_NFIC{dimer}:-0.583823035813;ZBTB6:-0.595297625195;IRF7:-0.596180956958;TFCP2:-0.598100531769;DMAP1_NCOR{1,2}_SMARC:-0.59878700406;ZNF384:-0.599491235971;GATA6:-0.645933217049;MZF1:-0.651736429745;ZIC1..3:-0.669841514692;IKZF1:-0.681242619636;NKX3-1:-0.705857644012;ETS1,2:-0.712865222175;TFAP4:-0.716554557867;RUNX1..3:-0.738409271544;EP300:-0.743965767139;ESRRA:-0.774555327136;FOXP3:-0.784521899153;MAZ:-0.795890567491;PAX6:-0.818405296557;FOXL1:-0.826432678981;NANOG{mouse}:-0.84828534274;PAX1,9:-0.848560749894;ZNF238:-0.851863697402;IRF1,2:-0.858839728268;SPI1:-0.898692550784;HES1:-0.924076941622;GATA4:-0.970439927582;ESR1:-0.970920352738;KLF4:-0.987764418057;ALX4:-0.992934462418;PRDM1:-0.995081556438;TBP:-1.00569414754;UFEwm:-1.00977254969;NR3C1:-1.17998306729;SMAD1..7,9:-1.1978927826;GLI1..3:-1.26799685892;HMGA1,2:-1.29037075305;RXRA_VDR{dimer}:-1.31251474039;HMX1:-1.34709449466;GCM1,2:-1.35954788164;NFE2L1:-1.38750079116;NFATC1..3:-1.52918497278;STAT2,4,6:-1.5549991949;NR1H4:-1.60920873795;SRF:-1.94040228797;PPARG:-2.07762447135;SPZ1:-2.10547381404;RXR{A,B,G}:-2.22702375589 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10414-106B9;search_select_hide=table117:FF:10414-106B9 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | maxillary sinus tumor cell line:HSQ-89 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10732 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10732
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10732
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.36 |
| 10 | 10 | 0.135 |
| 100 | 100 | 0.917 |
| 101 | 101 | 0.709 |
| 102 | 102 | 0.777 |
| 103 | 103 | 0.0611 |
| 104 | 104 | 0.762 |
| 105 | 105 | 0.936 |
| 106 | 106 | 0.00109 |
| 107 | 107 | 0.0187 |
| 108 | 108 | 0.98 |
| 109 | 109 | 0.257 |
| 11 | 11 | 0.0486 |
| 110 | 110 | 0.264 |
| 111 | 111 | 0.156 |
| 112 | 112 | 0.0339 |
| 113 | 113 | 0.25 |
| 114 | 114 | 0.0357 |
| 115 | 115 | 0.363 |
| 116 | 116 | 0.195 |
| 117 | 117 | 0.507 |
| 118 | 118 | 0.525 |
| 119 | 119 | 0.0926 |
| 12 | 12 | 0.764 |
| 120 | 120 | 0.856 |
| 121 | 121 | 0.762 |
| 122 | 122 | 0.676 |
| 123 | 123 | 0.692 |
| 124 | 124 | 0.175 |
| 125 | 125 | 0.44 |
| 126 | 126 | 0.519 |
| 127 | 127 | 0.521 |
| 128 | 128 | 0.033 |
| 129 | 129 | 0.53 |
| 13 | 13 | 0.843 |
| 130 | 130 | 0.638 |
| 131 | 131 | 0.222 |
| 132 | 132 | 0.661 |
| 133 | 133 | 0.0718 |
| 134 | 134 | 0.785 |
| 135 | 135 | 0.0166 |
| 136 | 136 | 0.443 |
| 137 | 137 | 0.306 |
| 138 | 138 | 0.424 |
| 139 | 139 | 0.06 |
| 14 | 14 | 0.897 |
| 140 | 140 | 0.116 |
| 141 | 141 | 0.654 |
| 142 | 142 | 0.407 |
| 143 | 143 | 0.00579 |
| 144 | 144 | 0.0328 |
| 145 | 145 | 0.0546 |
| 146 | 146 | 0.632 |
| 147 | 147 | 0.171 |
| 148 | 148 | 0.311 |
| 149 | 149 | 0.0511 |
| 15 | 15 | 0.263 |
| 150 | 150 | 0.331 |
| 151 | 151 | 0.426 |
| 152 | 152 | 0.297 |
| 153 | 153 | 0.711 |
| 154 | 154 | 0.58 |
| 155 | 155 | 0.375 |
| 156 | 156 | 0.554 |
| 157 | 157 | 0.275 |
| 158 | 158 | 0.897 |
| 159 | 159 | 0.56 |
| 16 | 16 | 0.198 |
| 160 | 160 | 0.0607 |
| 161 | 161 | 0.326 |
| 162 | 162 | 0.111 |
| 163 | 163 | 0.797 |
| 164 | 164 | 0.788 |
| 165 | 165 | 0.148 |
| 166 | 166 | 0.329 |
| 167 | 167 | 0.841 |
| 168 | 168 | 0.13 |
| 169 | 169 | 0.0215 |
| 17 | 17 | 0.19 |
| 18 | 18 | 0.163 |
| 19 | 19 | 0.0824 |
| 2 | 2 | 0.412 |
| 20 | 20 | 0.587 |
| 21 | 21 | 0.149 |
| 22 | 22 | 0.184 |
| 23 | 23 | 0.0402 |
| 24 | 24 | 0.882 |
| 25 | 25 | 0.622 |
| 26 | 26 | 0.157 |
| 27 | 27 | 0.233 |
| 28 | 28 | 0.912 |
| 29 | 29 | 0.712 |
| 3 | 3 | 0.107 |
| 30 | 30 | 0.65 |
| 31 | 31 | 0.573 |
| 32 | 32 | 0.00281 |
| 33 | 33 | 0.246 |
| 34 | 34 | 0.283 |
| 35 | 35 | 0.144 |
| 36 | 36 | 0.763 |
| 37 | 37 | 0.25 |
| 38 | 38 | 0.316 |
| 39 | 39 | 0.203 |
| 4 | 4 | 0.944 |
| 40 | 40 | 0.854 |
| 41 | 41 | 0.113 |
| 42 | 42 | 0.405 |
| 43 | 43 | 0.108 |
| 44 | 44 | 0.134 |
| 45 | 45 | 0.525 |
| 46 | 46 | 0.0298 |
| 47 | 47 | 0.538 |
| 48 | 48 | 0.351 |
| 49 | 49 | 0.15 |
| 5 | 5 | 0.231 |
| 50 | 50 | 0.879 |
| 51 | 51 | 0.382 |
| 52 | 52 | 0.293 |
| 53 | 53 | 0.593 |
| 54 | 54 | 0.311 |
| 55 | 55 | 0.516 |
| 56 | 56 | 0.583 |
| 57 | 57 | 0.636 |
| 58 | 58 | 0.345 |
| 59 | 59 | 0.0236 |
| 6 | 6 | 0.519 |
| 60 | 60 | 0.0442 |
| 61 | 61 | 0.683 |
| 62 | 62 | 0.0669 |
| 63 | 63 | 0.222 |
| 64 | 64 | 0.459 |
| 65 | 65 | 0.0306 |
| 66 | 66 | 0.285 |
| 67 | 67 | 0.689 |
| 68 | 68 | 0.00789 |
| 69 | 69 | 0.22 |
| 7 | 7 | 0.728 |
| 70 | 70 | 0.146 |
| 71 | 71 | 0.108 |
| 72 | 72 | 0.388 |
| 73 | 73 | 0.239 |
| 74 | 74 | 0.0794 |
| 75 | 75 | 0.509 |
| 76 | 76 | 0.978 |
| 77 | 77 | 0.0966 |
| 78 | 78 | 0.727 |
| 79 | 79 | 0.06 |
| 8 | 8 | 0.0883 |
| 80 | 80 | 0.115 |
| 81 | 81 | 0.134 |
| 82 | 82 | 0.0478 |
| 83 | 83 | 0.473 |
| 84 | 84 | 0.546 |
| 85 | 85 | 0.00753 |
| 86 | 86 | 0.64 |
| 87 | 87 | 0.832 |
| 88 | 88 | 0.78 |
| 89 | 89 | 0.0683 |
| 9 | 9 | 0.0872 |
| 90 | 90 | 0.448 |
| 91 | 91 | 0.0815 |
| 92 | 92 | 0.037 |
| 93 | 93 | 0.663 |
| 94 | 94 | 0.0755 |
| 95 | 95 | 0.58 |
| 96 | 96 | 0.0677 |
| 97 | 97 | 0.623 |
| 98 | 98 | 0.274 |
| 99 | 99 | 0.544 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10732
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:1357 maxillary sinus cancer
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0001764 maxillary sinus
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050619 (paranasal sinus cancer)
1357 (maxillary sinus cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000033 (head)
0001764 (maxillary sinus)
0000466 (immaterial anatomical entity)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001825 (paranasal sinus)
0000464 (anatomical space)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
