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(Created page with "{{f5samples |id=FF:10471-106I3 |name=renal cell carcinoma cell line:TUHR10TKB, biol_rep1 |sample_id=10471 |rna_tube_id=106I3 |rna_box=106 |rna_position=I3 |sample_cell_...")
 
 
(29 intermediate revisions by the same user not shown)
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{{f5samples
 
{{f5samples
|id=FF:10471-106I3
+
|DRA_sample_Accession=CAGE@SAMD00005261
|name=renal cell carcinoma cell line:TUHR10TKB, biol_rep1
+
|accession_numbers=CAGE;DRX007991;DRR008863;DRZ000288;DRZ001673;DRZ011638;DRZ013023
|sample_id=10471
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|rna_tube_id=106I3
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518
|rna_box=106
+
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=I3
+
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100067,FF:0101120,FF:0103192,FF:0100383,FF:0103732
|sample_cell_lot=
+
|comment=
|sample_cell_catalog=RCB1275
+
|created_by=
|sample_company=RIKEN Bioresource centre
+
|creation_date=
|rna_lot_number=
+
|data_phase=2
|rna_catalog_number=
+
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
+
|def=
|sample_strain=
+
|expression_enrichment_score=chr12:26277817..26277863,-!p2@BHLHE41!2.13!177.25!BHLHE41;;chr7:27205106..27205134,-!p2@HOXA9!1.92!83.13!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.76!56.85!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!1.73!53.03!HOXA11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.16!POU3F3;;chr1:201979703..201979721,+!p2@ELF3!1.68!46.82!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.68!46.34!HOXD11;;chr12:26277798..26277809,-!p5@BHLHE41!1.51!31.05!BHLHE41;;chr1:201979743..201979762,+!p1@ELF3!1.48!29.14!ELF3;;chr2:114036488..114036504,-!p1@PAX8!1.40!24.37!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.38!22.93!HNF1B;;chr5:142780189..142780223,-!p6@NR3C1!1.33!20.54!NR3C1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.07!HOXA11;;chr5:142780237..142780261,-!p7@NR3C1!1.27!17.68!NR3C1;;chr2:176994408..176994492,+!p1@HOXD8!1.27!17.68!HOXD8;;chr16:67198633..67198671,+!p1@HSF4!1.26!17.20!HSF4;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.24!HOXA10;;chr8:28243813..28243839,-!p4@ZNF395!1.22!27.71!ZNF395;;chr10:102505493..102505546,+!p2@PAX2!1.21!15.29!PAX2;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.29!KDM5D;;chr17:36105074..36105086,-!p2@HNF1B!1.20!14.81!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.81!HOXB6;;chr7:26191809..26191890,+!p1@NFE2L3!1.19!71.66!NFE2L3;;chr2:176969179..176969226,+!p2@HOXD11!1.17!13.85!HOXD11;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.50!TFAP2A;;chr5:142780280..142780294,-!p16@NR3C1!1.14!12.90!NR3C1;;chr3:141043020..141043049,+!p17@ZBTB38!1.14!12.90!ZBTB38;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!44.43!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.68!BHLHE41;;chr11:129245526..129245553,+!p1@BARX2!1.11!11.94!BARX2;;chr17:38465413..38465438,+!p5@RARA!1.10!18.63!RARA;;chr17:46692624..46692659,-!p3@HOXB8!1.10!11.47!HOXB8;;chr17:46622440..46622477,-!p5@HOXB2!1.07!11.94!HOXB2;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.51!HSF4;;chr7:27224911..27224922,-!p5@HOXA11!1.06!10.51!HOXA11;;chr18:6414884..6414942,-!p1@L3MBTL4!1.05!12.90!L3MBTL4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.04!10.03!POU3F3;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.33!HOXB7;;chr11:65430554..65430579,-!p3@RELA!1.02!24.37!RELA;;chr1:151804244..151804310,-!p1@RORC!1.02!9.56!RORC;;chr15:67357924..67357952,+!p2@SMAD3!1.01!62.11!SMAD3;;chr15:100106670..100106697,+!p4@MEF2A!1.01!15.29!MEF2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.01!10.51!TFAP2A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.00!9.56!GLIS1;;chr8:76319850..76319870,+!p4@HNF4G!1.00!9.08!HNF4G;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr17:36104873..36104903,-!p3@HNF1B!0.98!8.60!HNF1B;;chr2:178128149..178128198,-!p2@NFE2L2!0.97!45.39!NFE2L2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!222.15!TSC22D3;;chr19:58071201..58071238,-!p1@ZNF550!0.96!29.14!ZNF550;;chr1:221052700..221052730,+!p5@HLX!0.96!12.42!HLX;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.03!TFAP2A;;chr15:60884747..60884774,-!p3@RORA!0.94!19.59!RORA;;chr11:129245736..129245758,+!p2@BARX2!0.94!7.64!BARX2;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.64!TFAP2A;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.64!HOXA4;;chr6:1312325..1312340,+!p1@FOXQ1!0.93!12.42!FOXQ1;;chr6:36355513..36355578,-!p2@ETV7!0.93!9.56!ETV7;;chr16:54320646..54320672,-!p2@IRX3!0.91!10.99!IRX3;;chr6:100912785..100912822,-!p1@SIM1!0.91!7.17!SIM1;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.29!IRX3;;chr6:45390002..45390023,+!p6@RUNX2!0.90!12.42!RUNX2;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.84!CREB5;;chr19:37096139..37096170,-!p2@ZNF529!0.89!19.59!ZNF529;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.81!C11orf9;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.69!HOXA4;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.69!HOXA6;;chr10:70320074..70320106,+!p1@TET1!0.88!13.85!TET1;;chr19:53496768..53496799,-!p1@ZNF702P!0.88!10.51!ZNF702P;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!67.36!NFKBIE;;chr7:64023441..64023462,-!p1@ZNF680!0.87!53.99!ZNF680;;chr9:35732647..35732678,+!p2@CREB3!0.87!37.26!CREB3;;chr17:38256877..38256900,-!p2@NR1D1!0.87!21.50!NR1D1;;chr4:87857491..87857519,+!p10@AFF1!0.87!9.08!AFF1;;chr11:47236489..47236567,+!p2@DDB2!0.86!91.73!DDB2;;chr18:19749353..19749367,+!p4@GATA6!0.86!6.21!GATA6;;chr1:199996702..199996732,+!p5@NR5A2!0.86!6.21!NR5A2;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.21!HOXA5;;chr17:70117153..70117174,+!p1@SOX9!0.85!65.93!SOX9;;chr4:185395633..185395651,-!p2@IRF2!0.85!10.03!IRF2;;chr5:131826457..131826514,-!p1@IRF1!0.84!248.43!IRF1;;chr10:111967345..111967422,+!p1@MXI1!0.84!103.67!MXI1;;chr17:38256822..38256851,-!p1@NR1D1!0.84!49.21!NR1D1;;chr7:101459230..101459243,+!p2@CUX1!0.84!31.05!CUX1;;chr8:72756667..72756736,-!p2@MSC!0.84!9.56!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.83!225.50!DDIT3;;chr15:60884706..60884743,-!p1@RORA!0.83!31.53!RORA;;chr10:44101902..44101932,+!p2@ZNF485!0.83!12.42!ZNF485;;chr5:124082470..124082483,-!p8@ZNF608!0.83!5.73!ZNF608;;chr5:142779999..142780026,-!p20@NR3C1!0.83!5.73!NR3C1;;chr8:76319876..76319926,+!p1@HNF4G!0.83!5.73!HNF4G;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.75!ZNF296;;chr19:57752022..57752108,+!p1@ZNF805!0.82!26.28!ZNF805;;chr19:53193731..53193767,-!p1@ZNF83!0.81!52.55!ZNF83;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.90!ZNF608;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.60!PITX1;;chr8:72756637..72756664,-!p3@MSC!0.81!6.21!MSC;;chr9:114287433..114287513,+!p1@ZNF483!0.80!14.81!ZNF483;;chr8:67525473..67525518,-!p1@MYBL1!0.80!12.90!MYBL1;;chr1:23696308..23696339,-!p2@ZNF436!0.80!11.94!ZNF436;;chr5:124084466..124084484,-!p6@ZNF608!0.80!5.26!ZNF608;;chr3:141043050..141043063,+!p22@ZBTB38!0.80!5.26!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.80!5.26!ZNF732;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.64!NR2F2;;chr19:49140609..49140643,-!p1@DBP!0.79!31.53!DBP;;chr19:57019215..57019250,+!p1@ZNF471!0.79!8.12!ZNF471;;chr1:8938709..8938720,-!p3@ENO1!0.78!268.50!ENO1;;chr19:45252008..45252024,+!p2@BCL3!0.78!17.68!BCL3;;chr8:28243785..28243799,-!p6@ZNF395!0.78!6.21!ZNF395;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.81!EPAS1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.77!10.99!ZNF395;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.60!FOXD1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.85!DDB2;;chr6:43337180..43337244,-!p1@ZNF318!0.76!20.07!ZNF318;;chr10:98592674..98592724,+!p2@LCOR!0.76!10.03!LCOR;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.17!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.76!5.73!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.78!HOXC10;;chr2:176969097..176969109,+!p3@HOXD11!0.76!4.78!HOXD11;;chr5:172662197..172662216,-!p1@NKX2-5!0.76!4.78!NKX2-5;;chr6:1612300..1612324,+!p3@FOXC1!0.76!4.78!FOXC1;;chr7:27219849..27219867,-!p6@HOXA10!0.76!4.78!HOXA10;;chr17:46655730..46655791,-!p1@HOXB4!0.75!12.42!HOXB4;;chr6:45390025..45390076,+!p2@RUNX2!0.75!11.94!RUNX2;;chr7:27135591..27135658,-!p1@HOXA1!0.75!9.56!HOXA1;;chr6:144329531..144329546,-!p5@PLAGL1!0.75!7.64!PLAGL1;;chr2:113057415..113057477,+!p3@ZC3H6!0.75!6.21!ZC3H6;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.73!HMGA2;;chr3:178789622..178789633,-!p3@ZMAT3!0.74!9.08!ZMAT3;;chr15:96875041..96875052,+!p17@NR2F2!0.74!6.69!NR2F2;;chr17:38465441..38465481,+!p6@RARA!0.74!5.73!RARA;;chr7:44143925..44143970,+!p1@AEBP1!0.73!109.41!AEBP1;;chr5:139494712..139494759,+!p5@PURA!0.72!7.64!PURA;;chr10:102495147..102495159,+!p4@PAX2!0.72!4.30!PAX2;;chr16:51185172..51185197,-!p1@SALL1!0.72!4.30!SALL1;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.30!GATA6;;chr19:16435423..16435484,+!p5@KLF2!0.72!4.30!KLF2;;chr19:44952635..44952668,-!p1@ZNF229!0.71!22.93!ZNF229;;chr21:36421535..36421610,-!p2@RUNX1!0.71!16.24!RUNX1;;chr12:72057747..72057854,+!p4@THAP2!0.71!12.42!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.47!RUNX2;;chr1:23696448..23696453,-!p5@ZNF436!0.71!5.26!ZNF436;;chr7:64363638..64363667,+!p1@ZNF273!0.70!22.45!ZNF273;;chr2:148778973..148779035,+!p3@MBD5!0.70!11.47!MBD5;;chr6:28109608..28109693,+!p1@ZNF192!0.69!75.01!ZNF192;;chr19:52598958..52599026,-!p1@ZNF841!0.69!42.04!ZNF841;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.69!16.72!HNRPK;;chr8:123793959..123793977,+!p4@ZHX2!0.69!8.12!ZHX2;;chr19:12551785..12551823,-!p1@ZNF443!0.69!6.69!ZNF443;;chr19:38085768..38085821,+!p1@ZNF540!0.69!6.21!ZNF540;;chr7:6655225..6655279,+!p1@ENST00000457543!0.69!6.21!ZNF853;;chr19:37407411..37407451,+!p3@ZNF568!0.69!5.26!ZNF568;;chr6:1612248..1612281,+!p2@FOXC1!0.69!4.30!FOXC1;;chr7:92076740..92076834,+!p1@GATAD1!0.68!109.41!GATAD1;;chr19:53400852..53400962,-!p1@ZNF320!0.68!43.95!ZNF320;;chr5:142784003..142784065,-!p2@NR3C1!0.68!35.35!NR3C1;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.99!NCOA7;;chr19:57078972..57079027,+!p2@ZNF470!0.68!6.21!ZNF470;;chr4:106155658..106155662,+!p5@TET2!0.68!4.78!TET2;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.68!3.82!POU3F3;;chr15:90294087..90294115,-!p1@MESP1!0.68!3.82!MESP1;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.82!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.68!3.82!HOXB9;;chr10:135122868..135122893,+!p3@ZNF511!0.68!3.82!ZNF511;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.82!HOXC10;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.82!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!0.68!3.82!HOXA5;;chr7:27219833..27219845,-!p7@HOXA10!0.68!3.82!HOXA10;;chr9:115819058..115819082,-!p2@ZFP37!0.68!3.82!ZFP37;;chr7:4721885..4721945,+!p1@FOXK1!0.67!129.95!FOXK1;;chr3:169491171..169491205,+!p1@MYNN!0.67!73.57!MYNN;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.38!ZMAT1;;chr2:113033141..113033162,+!p2@ZC3H6!0.67!8.60!ZC3H6;;chr3:5021268..5021282,+!p4@BHLHE40!0.67!8.12!BHLHE40;;chr4:185395590..185395627,-!p3@IRF2!0.67!4.78!IRF2;;chr1:158979686..158979745,+!p1@IFI16!0.66!136.64!IFI16;;chr3:141868357..141868393,-!p3@TFDP2!0.66!27.23!TFDP2;;chr10:97890024..97890064,+!p2@ZNF518A!0.66!10.99!ZNF518A;;chr19:37406934..37406949,-!p1@ZNF829!0.66!6.69!ZNF829;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.66!6.21!PCBP2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.66!6.21!ZC3H11A;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.65!42.52!ZNF226;;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|sample_dev_stage=
+
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|sample_tissue=kidney
 
|sample_donor(cell lot)=
 
|sample_sex=male
 
|sample_age=69
 
|sample_ethnicity=J
 
|rna_rin=
 
|rna_od260/230=1.12000
 
|rna_od260/280=2.07000
 
|sample_cell_type=unclassifiable
 
|sample_cell_line=TUHR10TKB
 
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 
|sample_experimental_condition=
 
|sample_disease=renal cell carcinoma
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=21.69075
 
|rna_concentration=0.86763
 
|sample_note=
 
|profile_hcage=CNhs11257,LSID757,release008,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
 
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
 
|sample_description=
 
 
 
 
|fonse_cell_line=FF:0100067,FF:0101120
 
|fonse_cell_line=FF:0100067,FF:0101120
 
|fonse_cell_line_closure=FF:0100067,FF:0101120
 
|fonse_cell_line_closure=FF:0100067,FF:0101120
Line 67: Line 40:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 +
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:10471-106I3
 +
|is_a=EFO:0002091;;FF:0000210;;FF:0103732
 +
|is_obsolete=
 +
|library_id=CNhs11257
 +
|library_id_phase_based=2:CNhs11257
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10471
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10471
 +
|name=renal cell carcinoma cell line:TUHR10TKB
 +
|namespace=FANTOM5
 +
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs11257,LSID757,release008,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0.193093817912705,0,0,0,0,1.09973094495548,0,-0.107760668121421,-0.282403560576942,0,0,0,0.0776905139722545,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.530040612165996,0,0.32184760904782,0,0,0,0,0,0,0,0,0.317399189986693,0,0,0,0,0,0,0.169601464072093,-0.0969923612426051,0,0,0.0722578368589959,0,0,0,0,0,0,0,0,0.169601464072093,0,0,0,0,0.169601464072093,0,0,0,0.137054616027697,0,0,0,0,0,0,0.130513954426052,0,0,0,0.0645773371359741,-0.126396670659822,0,0,0.169601464072093,0,0.193223218771128,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.140914726548734,0.414166608599921,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0,0,0.386187635825411,0.193223218771128,0,0,0,0.169601464072093,0,0,0,0,0,0,0,-0.247178875285564,0.230430017040464,-0.182827648743174,-0.143515142523472,0.0848007320360465,0,0.21355241115334,0,0.291258570008834,0,0.0982282745088465,0.169601464072093,0,0.464043212706666,0.291258570008834,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.169601464072093,0,-0.0186252810838506,0.158570981808259,0,-0.0286287761450928,-0.0683442610773682,0,0.169601464072093,0,0,-0.270240669334324,0,0.0487219802783522,-0.0827201683234173,0.0914584498395412,-0.520025664055038,0.122796805179713,0,0,0,-0.274881446994723,-0.380462922439559,0,0,0.390271961637497,-0.181349618560659,0,0,-0.391044581551635,0,0.297568090970152,-0.0604397418968705,0,-0.0412970530221844,0,0,0.169601464072093,0,0,0.169601464072093,0,0.386187635825411,0.724256628370749,0,0,0.727291102930178,0.137054616027697,0.0169602687996785,0,0.291258570008834,0,0.00306657789407383,0,0.115795827517224,-0.0820275859477329,0.194411236221805,0.0186160374641639,-0.632936610637966,0,0.284929425027608,-0.0955129302561114,0.11757228508479,-0.24015731778337,-0.147401849371139,-0.189981719549847,0.0687845024719186,0.0394379374071092,0.274822961125577,0.0891942476524165,0.080505879084797,-0.096384318335887,-0.0595417300370487,-0.210145849844487,0,0,0,-0.0819153650383744,0,0,-0.103927078651362,0.338159499847831,-0.20640015599463,-0.200858313323028,0.020268177908568,0.44952676003527,-0.0395325284566706,-0.0712488170711832,0,0.267917907302941,0,0,0,0.0147175979275584,-0.61631064303523,-0.0857855610126836,0,-0.0199342491043144,-0.0683442610773682,0,-0.006935522371701,-0.0917664767076958,0.291258570008834,0.169601464072093,0.381302300626379,0,0,0,0,0,-0.0707050932235291,0.184764485340583,0.153332074269867,0,-0.128731104766466,0,-0.0652644739992535,0,0.543620129578757,0.32786985055519,0,0.00232750862297415,0,-0.296312778936751,0.431140606810212,-0.00567556877629483,-0.422394805391737,0.232811743197009,0.181552083888807,-0.322193015924914,-0.53506117388089,-0.619338400718134,0,-0.0881268324752877,0,-0.0255629903154224,-0.509896667549432,-0.0437342155098144,0.187075186971434,0,0.425013850800923,0,0.317944468805142,0,-0.710364666594778,-0.54043375147324,0.322451848352739,-0.0855379003245647,0,-0.674988214019963,1.30116177672487,0,0.314934778865541,0,0,0.0192343807374535,0.130513954426052,0.198999163222825,-0.138989456679195,0,-0.498821588380823,0,0,0.38270608616121,0.294564574401607,0,0.238403183160744,0.327513200849056,0.456879549044294,0.1752874965739,0.291258570008834,0,0.314379193505067,-0.100407161722077,0,-0.436326599745937,-0.0636048451378017,-0.619783323958633,-0.0837248774146629,-0.0292328279772758,-0.108622809454255,0,0,0.208659869860236,0,0.096556906986903,0,0.169601464072093,0.136306339226587,0,0,0,0,0.0697546155252335,0,0,0,0,0.0848007320360465,0,0,-0.0224685039189274,-0.354833330216448,0,-0.0904027382521514,0,0,0,0,0,-0.110803081130275,0,0.291258570008834,-1.59233083881968,0.157752601178655,-0.12301741567642,0,0,0,0,-0.0461219384813818,-0.203236562094724,0,0.159395863511202,0,0,0,0,0.443899622376784,0,0,0.230430017040464,0.145629285004417,0.23352811295517,0.107060794217011,0,0,0,-0.27695440160179,0.169601464072093,0,0,0,-0.161981597006898,0,0.0142597323894205,0.181949869937278,0,-0.316386010294101,0.0880195845252514,0,-0.058002887010584,-0.774687587218532,1.03898537619652,0,0.169601464072093,-0.0917456677177947,0,0,0.578226443868195,0,0,0.0374405596252463,0,0,0,0,0.169601464072093,0.169601464072093,0.643667247803202,0.169601464072093,0,0,0,0.169601464072093,0,0.291258570008834,0,0,0,0.291258570008834,-0.341229606964717,0.0773774074135824,0.293188544580386,0,0,0,0,0.230430017040464,0,0.121523261925514,-0.0045089272798135,0,0,0.0576032059909755,0,0,0.169601464072093,0,0,0.440598078001296,0,0,0,0,0,-0.0969923612426051,0,0,0,0.386187635825411,-0.564807121153884,0,0,-0.107760668121421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262868549789964,0.229646466376943,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.723413536149478,0,1.09973094495548,0,0.169601464072093,0,0,0,0.073642056698506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117421870181392,0,0,-0.0480843259468497,0,0,-0.147827620596996,0,0,0,0,0,0,0.161753393884179,0,0,0,0,0,0,0,0.145629285004417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00168759663115011,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.185861740148226,0,0,0,0,0,0,0.39310946900533,-0.0182000937401498,0.02226279298285,0,0,0,0.091243712521962,0,0,-0.0215409910184605,0.169601464072093,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291258570008834,0,0,0,0.169601464072093,0,0,0,0.05078936876063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,1.39087655694376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318827761420354,0,0,0,0,0,0,0,0,0.530040612165996,0,0.00234416532262438,0,0,-0.0482220752390542,0,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 +
|rna_box=106
 +
|rna_catalog_number=
 +
|rna_concentration=0.86763
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=1.12
 +
|rna_od260/280=2.07
 +
|rna_position=I3
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=106I3
 +
|rna_weight_ug=21.69075
 +
|sample_age=69
 +
|sample_category=cell lines
 +
|sample_cell_catalog=RCB1275
 +
|sample_cell_line=TUHR10TKB
 +
|sample_cell_lot=
 +
|sample_cell_type=unclassifiable
 +
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 +
|sample_company=RIKEN Bioresource centre
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=renal cell carcinoma
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=J
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.5333058397107e-240!GO:0043231;intracellular membrane-bound organelle;1.94981231496111e-195!GO:0043227;membrane-bound organelle;3.17010435784556e-195!GO:0043226;organelle;3.98734411697432e-193!GO:0043229;intracellular organelle;1.96119794940497e-192!GO:0005737;cytoplasm;9.11116353273923e-170!GO:0044422;organelle part;1.52081339695293e-126!GO:0044446;intracellular organelle part;3.72570099343535e-125!GO:0044444;cytoplasmic part;8.95849452068713e-122!GO:0044237;cellular metabolic process;1.94491101273504e-94!GO:0044238;primary metabolic process;3.87966151122625e-92!GO:0043170;macromolecule metabolic process;2.60702852943839e-87!GO:0005634;nucleus;5.18165527322411e-81!GO:0032991;macromolecular complex;2.17415865455004e-78!GO:0030529;ribonucleoprotein complex;1.25001128089797e-74!GO:0003723;RNA binding;5.60516775868205e-67!GO:0043233;organelle lumen;1.70586609797056e-64!GO:0031974;membrane-enclosed lumen;1.70586609797056e-64!GO:0044428;nuclear part;4.9407487219993e-63!GO:0005739;mitochondrion;3.92074742639683e-55!GO:0005515;protein binding;2.64319153601867e-52!GO:0043283;biopolymer metabolic process;3.59569851724214e-48!GO:0033036;macromolecule localization;5.09925617107001e-48!GO:0031090;organelle membrane;9.45849391890679e-48!GO:0019538;protein metabolic process;4.13883486569813e-47!GO:0015031;protein transport;1.38982649487753e-46!GO:0006396;RNA processing;7.7905214057353e-45!GO:0006412;translation;7.99492438061178e-45!GO:0045184;establishment of protein localization;1.1631755004172e-44!GO:0010467;gene expression;3.8695091153611e-44!GO:0008104;protein localization;4.31503825477263e-44!GO:0005840;ribosome;1.10094993887395e-42!GO:0044260;cellular macromolecule metabolic process;1.32184584270551e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.89936817207277e-42!GO:0044267;cellular protein metabolic process;1.49028500429504e-41!GO:0016043;cellular component organization and biogenesis;1.46734841094331e-38!GO:0031981;nuclear lumen;5.27444776024543e-38!GO:0003735;structural constituent of ribosome;1.02849753773854e-37!GO:0043234;protein complex;3.12347792444254e-37!GO:0044429;mitochondrial part;3.56920976191475e-37!GO:0046907;intracellular transport;4.64953575278275e-37!GO:0016071;mRNA metabolic process;5.1987799415227e-37!GO:0008380;RNA splicing;3.73540717657837e-36!GO:0005829;cytosol;2.03599126260846e-35!GO:0009059;macromolecule biosynthetic process;9.00886744718933e-35!GO:0009058;biosynthetic process;8.66710061415023e-34!GO:0031967;organelle envelope;1.61308079903585e-33!GO:0031975;envelope;3.48237029976073e-33!GO:0044249;cellular biosynthetic process;1.83429726334114e-32!GO:0006397;mRNA processing;3.8674726819412e-32!GO:0033279;ribosomal subunit;4.10878385310227e-32!GO:0003676;nucleic acid binding;6.38255465941176e-30!GO:0006886;intracellular protein transport;2.00194305458934e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.98640618280481e-27!GO:0065003;macromolecular complex assembly;7.34096402993265e-27!GO:0043228;non-membrane-bound organelle;2.39456408497982e-26!GO:0043232;intracellular non-membrane-bound organelle;2.39456408497982e-26!GO:0005681;spliceosome;1.25421206773365e-25!GO:0000166;nucleotide binding;2.18716300463576e-25!GO:0051649;establishment of cellular localization;2.69240501905023e-25!GO:0051641;cellular localization;3.87664169497327e-25!GO:0022607;cellular component assembly;3.55875658740537e-24!GO:0006996;organelle organization and biogenesis;5.459215229539e-24!GO:0012505;endomembrane system;8.84731202537726e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.85914289606026e-23!GO:0017111;nucleoside-triphosphatase activity;7.58422915955925e-23!GO:0016462;pyrophosphatase activity;7.74990376505997e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.41014095270871e-22!GO:0005740;mitochondrial envelope;1.62556729825145e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.69755324044079e-22!GO:0005654;nucleoplasm;2.13879282058406e-22!GO:0019866;organelle inner membrane;1.70084070924401e-21!GO:0016070;RNA metabolic process;2.44794186040294e-21!GO:0031966;mitochondrial membrane;2.79605860708079e-21!GO:0044445;cytosolic part;7.37991652184106e-21!GO:0006259;DNA metabolic process;7.83056756604613e-21!GO:0006512;ubiquitin cycle;7.95428669378989e-21!GO:0005783;endoplasmic reticulum;4.05100896726884e-20!GO:0005743;mitochondrial inner membrane;4.41978235544826e-20!GO:0044265;cellular macromolecule catabolic process;4.8085710320068e-20!GO:0006457;protein folding;1.33641101938866e-19!GO:0016874;ligase activity;2.10962829967753e-19!GO:0032553;ribonucleotide binding;4.41218428880765e-19!GO:0032555;purine ribonucleotide binding;4.41218428880765e-19!GO:0017076;purine nucleotide binding;8.04139215795813e-19!GO:0005730;nucleolus;4.87899073295576e-18!GO:0044451;nucleoplasm part;6.07196313442926e-18!GO:0031980;mitochondrial lumen;7.8683958999613e-18!GO:0005759;mitochondrial matrix;7.8683958999613e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.54050460637428e-18!GO:0007049;cell cycle;8.75049004030129e-18!GO:0019941;modification-dependent protein catabolic process;1.53738616080175e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.53738616080175e-17!GO:0022618;protein-RNA complex assembly;1.78561174850851e-17!GO:0043285;biopolymer catabolic process;1.87119847062431e-17!GO:0044257;cellular protein catabolic process;2.11921759852666e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.46511810985257e-17!GO:0006119;oxidative phosphorylation;2.791395827544e-17!GO:0048193;Golgi vesicle transport;4.21627305935932e-17!GO:0005794;Golgi apparatus;5.78795839770638e-17!GO:0009057;macromolecule catabolic process;6.12892907504101e-17!GO:0015935;small ribosomal subunit;8.42539635825831e-17!GO:0006974;response to DNA damage stimulus;1.46821819634069e-16!GO:0008134;transcription factor binding;1.56149752141132e-16!GO:0015934;large ribosomal subunit;2.0527672446364e-16!GO:0044455;mitochondrial membrane part;2.9277941102802e-16!GO:0044432;endoplasmic reticulum part;3.4593492860094e-16!GO:0048770;pigment granule;3.07960398285416e-15!GO:0042470;melanosome;3.07960398285416e-15!GO:0008135;translation factor activity, nucleic acid binding;5.09670232777082e-15!GO:0006915;apoptosis;6.95260407556213e-15!GO:0012501;programmed cell death;8.08366064684132e-15!GO:0006605;protein targeting;9.20579333037029e-15!GO:0005524;ATP binding;9.33327607048788e-15!GO:0030163;protein catabolic process;9.78269238716598e-15!GO:0044248;cellular catabolic process;1.707271847945e-14!GO:0051082;unfolded protein binding;3.04344831107124e-14!GO:0032559;adenyl ribonucleotide binding;3.30034672006389e-14!GO:0030554;adenyl nucleotide binding;6.66031626372809e-14!GO:0022402;cell cycle process;1.01923021488576e-13!GO:0006281;DNA repair;1.15724961461868e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.53233725646112e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7512365638737e-13!GO:0005746;mitochondrial respiratory chain;2.33873347647796e-13!GO:0016192;vesicle-mediated transport;2.71080736819374e-13!GO:0008219;cell death;3.30769085056687e-13!GO:0016265;death;3.30769085056687e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.7883934890534e-12!GO:0000375;RNA splicing, via transesterification reactions;1.7883934890534e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.7883934890534e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.42111870799066e-12!GO:0051186;cofactor metabolic process;3.49011310116918e-12!GO:0043412;biopolymer modification;3.75730300600044e-12!GO:0009719;response to endogenous stimulus;4.05954846897441e-12!GO:0005635;nuclear envelope;4.24203424596482e-12!GO:0006913;nucleocytoplasmic transport;4.24203424596482e-12!GO:0005761;mitochondrial ribosome;4.24203424596482e-12!GO:0000313;organellar ribosome;4.24203424596482e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.57987602836213e-12!GO:0050794;regulation of cellular process;5.57987602836213e-12!GO:0000278;mitotic cell cycle;5.98120323909874e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.81927311597786e-12!GO:0005789;endoplasmic reticulum membrane;6.81927311597786e-12!GO:0016604;nuclear body;8.13437771502663e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.00146858223364e-11!GO:0003954;NADH dehydrogenase activity;1.00146858223364e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00146858223364e-11!GO:0051169;nuclear transport;1.08422429239929e-11!GO:0016887;ATPase activity;1.12409221775085e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.51859707585853e-11!GO:0042623;ATPase activity, coupled;3.63739493121479e-11!GO:0005793;ER-Golgi intermediate compartment;3.76290065007839e-11!GO:0006413;translational initiation;3.8440495890223e-11!GO:0003743;translation initiation factor activity;5.10603917773168e-11!GO:0008639;small protein conjugating enzyme activity;5.53528174201387e-11!GO:0031965;nuclear membrane;8.29279081457391e-11!GO:0004842;ubiquitin-protein ligase activity;1.23440637837994e-10!GO:0003712;transcription cofactor activity;1.39556516701973e-10!GO:0006464;protein modification process;1.49777320646688e-10!GO:0042981;regulation of apoptosis;2.07611129857647e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.11902029236932e-10!GO:0042773;ATP synthesis coupled electron transport;2.11902029236932e-10!GO:0042254;ribosome biogenesis and assembly;2.67035983765014e-10!GO:0019787;small conjugating protein ligase activity;3.11351688186125e-10!GO:0043067;regulation of programmed cell death;3.25936697743939e-10!GO:0004386;helicase activity;3.83421582337825e-10!GO:0006446;regulation of translational initiation;4.16247633804452e-10!GO:0000087;M phase of mitotic cell cycle;4.69307606362765e-10!GO:0007067;mitosis;4.97505981666166e-10!GO:0006732;coenzyme metabolic process;4.97505981666166e-10!GO:0030964;NADH dehydrogenase complex (quinone);4.97505981666166e-10!GO:0045271;respiratory chain complex I;4.97505981666166e-10!GO:0005747;mitochondrial respiratory chain complex I;4.97505981666166e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.35723782546665e-10!GO:0051301;cell division;9.00472210328715e-10!GO:0044453;nuclear membrane part;1.07920276259984e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.69332502561292e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.05805413584153e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.43837143321858e-09!GO:0009055;electron carrier activity;3.0946681108604e-09!GO:0043687;post-translational protein modification;3.18693362371934e-09!GO:0017038;protein import;3.24578370352882e-09!GO:0016607;nuclear speck;3.53108878992087e-09!GO:0000074;regulation of progression through cell cycle;3.59306645867088e-09!GO:0051726;regulation of cell cycle;4.20696891240569e-09!GO:0006260;DNA replication;4.33255017900158e-09!GO:0003924;GTPase activity;4.33255017900158e-09!GO:0006403;RNA localization;5.37963889334023e-09!GO:0006461;protein complex assembly;8.00682468550996e-09!GO:0005694;chromosome;8.30478266953765e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.07465944592406e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.13086697548968e-08!GO:0050657;nucleic acid transport;1.16097123616705e-08!GO:0051236;establishment of RNA localization;1.16097123616705e-08!GO:0050658;RNA transport;1.16097123616705e-08!GO:0016881;acid-amino acid ligase activity;1.17570217237542e-08!GO:0022403;cell cycle phase;1.65685081272279e-08!GO:0043566;structure-specific DNA binding;2.42972804444886e-08!GO:0044431;Golgi apparatus part;2.7324304413461e-08!GO:0006399;tRNA metabolic process;2.90768360539447e-08!GO:0006163;purine nucleotide metabolic process;3.07195527438275e-08!GO:0008026;ATP-dependent helicase activity;3.1297044854012e-08!GO:0009056;catabolic process;3.50196482638379e-08!GO:0005643;nuclear pore;3.59673936736693e-08!GO:0000279;M phase;3.67748961800351e-08!GO:0065002;intracellular protein transport across a membrane;3.86178782341496e-08!GO:0006164;purine nucleotide biosynthetic process;4.78566551959576e-08!GO:0009259;ribonucleotide metabolic process;5.86034228120778e-08!GO:0009150;purine ribonucleotide metabolic process;6.58331777533929e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.43848378240639e-08!GO:0004812;aminoacyl-tRNA ligase activity;9.43848378240639e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.43848378240639e-08!GO:0051276;chromosome organization and biogenesis;9.43848378240639e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.7692470595316e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.87099823046416e-08!GO:0043038;amino acid activation;1.1770422925788e-07!GO:0006418;tRNA aminoacylation for protein translation;1.1770422925788e-07!GO:0043039;tRNA aminoacylation;1.1770422925788e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.21801183575301e-07!GO:0044427;chromosomal part;1.53825999645322e-07!GO:0016740;transferase activity;1.63923614991745e-07!GO:0005768;endosome;1.74877305733144e-07!GO:0015630;microtubule cytoskeleton;1.99278604562038e-07!GO:0007005;mitochondrion organization and biogenesis;2.37294316881501e-07!GO:0016072;rRNA metabolic process;2.37294316881501e-07!GO:0006364;rRNA processing;2.37294316881501e-07!GO:0009260;ribonucleotide biosynthetic process;2.38248496262187e-07!GO:0050789;regulation of biological process;2.70741456418507e-07!GO:0043069;negative regulation of programmed cell death;2.76020278321031e-07!GO:0030120;vesicle coat;2.94853290935331e-07!GO:0030662;coated vesicle membrane;2.94853290935331e-07!GO:0043066;negative regulation of apoptosis;3.41522570956534e-07!GO:0008565;protein transporter activity;4.29221464242315e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.43257422072155e-07!GO:0005525;GTP binding;4.58385674369021e-07!GO:0016787;hydrolase activity;4.83439047486241e-07!GO:0000139;Golgi membrane;5.40218105146347e-07!GO:0048523;negative regulation of cellular process;5.7157153459859e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.76070092551665e-07!GO:0051028;mRNA transport;7.12105332018274e-07!GO:0003697;single-stranded DNA binding;7.25171134056222e-07!GO:0051170;nuclear import;8.00985263581205e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.54753175931823e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.54753175931823e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.84592202945569e-07!GO:0051188;cofactor biosynthetic process;9.93939304264487e-07!GO:0046930;pore complex;1.01704705633284e-06!GO:0016779;nucleotidyltransferase activity;1.29129654010816e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32212704256576e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32212704256576e-06!GO:0000245;spliceosome assembly;1.35007058343131e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.42403470576168e-06!GO:0006606;protein import into nucleus;1.60183826213341e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.6316238061824e-06!GO:0009141;nucleoside triphosphate metabolic process;2.31370352550358e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.34646038679536e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.34646038679536e-06!GO:0015986;ATP synthesis coupled proton transport;2.38119538361096e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.38119538361096e-06!GO:0032446;protein modification by small protein conjugation;2.43164029471936e-06!GO:0006916;anti-apoptosis;2.53659359723385e-06!GO:0019222;regulation of metabolic process;2.61119114827863e-06!GO:0051246;regulation of protein metabolic process;3.13676037966158e-06!GO:0048519;negative regulation of biological process;3.22252359691705e-06!GO:0004298;threonine endopeptidase activity;3.51893365982454e-06!GO:0009108;coenzyme biosynthetic process;3.62667549550005e-06!GO:0005813;centrosome;3.7082979235597e-06!GO:0016567;protein ubiquitination;3.81042878871447e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.07860630993348e-06!GO:0048475;coated membrane;4.75665166299855e-06!GO:0030117;membrane coat;4.75665166299855e-06!GO:0005815;microtubule organizing center;4.91645212811564e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.15241909035484e-06!GO:0031988;membrane-bound vesicle;5.31036908922287e-06!GO:0016563;transcription activator activity;5.36043292995433e-06!GO:0005770;late endosome;5.48498675753469e-06!GO:0016023;cytoplasmic membrane-bound vesicle;5.98745437621414e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.45661093027846e-06!GO:0032561;guanyl ribonucleotide binding;6.5666903116469e-06!GO:0019001;guanyl nucleotide binding;6.5666903116469e-06!GO:0009117;nucleotide metabolic process;6.94579555609909e-06!GO:0016853;isomerase activity;7.6631126200787e-06!GO:0016491;oxidoreductase activity;7.91888632099508e-06!GO:0006613;cotranslational protein targeting to membrane;8.50319570484934e-06!GO:0005788;endoplasmic reticulum lumen;9.64622823346614e-06!GO:0030867;rough endoplasmic reticulum membrane;1.13989215392287e-05!GO:0046034;ATP metabolic process;1.25639994366305e-05!GO:0003714;transcription corepressor activity;1.43860247452554e-05!GO:0003713;transcription coactivator activity;1.49497800389556e-05!GO:0008654;phospholipid biosynthetic process;1.51836530968645e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.51836530968645e-05!GO:0019829;cation-transporting ATPase activity;1.55382642143378e-05!GO:0006366;transcription from RNA polymerase II promoter;1.57999546518951e-05!GO:0006323;DNA packaging;1.58712169162502e-05!GO:0031982;vesicle;1.64751827612556e-05!GO:0009060;aerobic respiration;1.68894081263058e-05!GO:0006754;ATP biosynthetic process;1.78297596893109e-05!GO:0006753;nucleoside phosphate metabolic process;1.78297596893109e-05!GO:0045259;proton-transporting ATP synthase complex;2.19276751552596e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.20531343462342e-05!GO:0045333;cellular respiration;2.38343586439051e-05!GO:0005773;vacuole;2.54696036081737e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.84071011322252e-05!GO:0031410;cytoplasmic vesicle;3.08577250211428e-05!GO:0016564;transcription repressor activity;3.58783059510073e-05!GO:0051427;hormone receptor binding;3.59329603113747e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.78967928725077e-05!GO:0000151;ubiquitin ligase complex;4.20238460350868e-05!GO:0065004;protein-DNA complex assembly;4.51044512850314e-05!GO:0043623;cellular protein complex assembly;5.04262201755015e-05!GO:0016859;cis-trans isomerase activity;5.13782636664527e-05!GO:0035257;nuclear hormone receptor binding;5.13876902789016e-05!GO:0003690;double-stranded DNA binding;5.15569998170564e-05!GO:0006891;intra-Golgi vesicle-mediated transport;6.24425287507908e-05!GO:0003724;RNA helicase activity;6.83743465881495e-05!GO:0044440;endosomal part;6.93196602124117e-05!GO:0010008;endosome membrane;6.93196602124117e-05!GO:0001666;response to hypoxia;8.70478326628422e-05!GO:0051168;nuclear export;0.000108370313988298!GO:0006402;mRNA catabolic process;0.000118405229128984!GO:0007243;protein kinase cascade;0.000119229809830145!GO:0044262;cellular carbohydrate metabolic process;0.000123793951698879!GO:0000323;lytic vacuole;0.000124063043850462!GO:0005764;lysosome;0.000124063043850462!GO:0045786;negative regulation of progression through cell cycle;0.000124361863184306!GO:0019843;rRNA binding;0.000129740105477231!GO:0046914;transition metal ion binding;0.000135395646813213!GO:0031323;regulation of cellular metabolic process;0.000135395646813213!GO:0006752;group transfer coenzyme metabolic process;0.000139557069048441!GO:0005798;Golgi-associated vesicle;0.000143445484951106!GO:0006612;protein targeting to membrane;0.00015795614558931!GO:0005819;spindle;0.000158324963000236!GO:0005769;early endosome;0.000184172797718358!GO:0046467;membrane lipid biosynthetic process;0.000185732182262577!GO:0008270;zinc ion binding;0.000196585503739023!GO:0033116;ER-Golgi intermediate compartment membrane;0.000200256747927116!GO:0051789;response to protein stimulus;0.000213597146163784!GO:0006986;response to unfolded protein;0.000213597146163784!GO:0006099;tricarboxylic acid cycle;0.000217758886562011!GO:0046356;acetyl-CoA catabolic process;0.000217758886562011!GO:0006302;double-strand break repair;0.000236653769171309!GO:0005762;mitochondrial large ribosomal subunit;0.000242483096479866!GO:0000315;organellar large ribosomal subunit;0.000242483096479866!GO:0048522;positive regulation of cellular process;0.000248934388749297!GO:0005667;transcription factor complex;0.000256945265763045!GO:0006793;phosphorus metabolic process;0.000265361423361248!GO:0006796;phosphate metabolic process;0.000265361423361248!GO:0008234;cysteine-type peptidase activity;0.000265624279312256!GO:0030133;transport vesicle;0.00026838751174979!GO:0006350;transcription;0.000287292195629934!GO:0043021;ribonucleoprotein binding;0.000292068353102465!GO:0006333;chromatin assembly or disassembly;0.000294895707090943!GO:0031324;negative regulation of cellular metabolic process;0.000308067265894164!GO:0048471;perinuclear region of cytoplasm;0.000314994723919969!GO:0043065;positive regulation of apoptosis;0.000349803480997805!GO:0009967;positive regulation of signal transduction;0.000356573047735896!GO:0031252;leading edge;0.000376156855541631!GO:0065007;biological regulation;0.000381387223271257!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000398614149634885!GO:0015399;primary active transmembrane transporter activity;0.000398614149634885!GO:0007088;regulation of mitosis;0.000398614149634885!GO:0006401;RNA catabolic process;0.000416142729013131!GO:0006084;acetyl-CoA metabolic process;0.00042034643005417!GO:0019899;enzyme binding;0.00042540876381821!GO:0006091;generation of precursor metabolites and energy;0.000426423059081243!GO:0016197;endosome transport;0.000442850169605883!GO:0006950;response to stress;0.000449946104305779!GO:0043068;positive regulation of programmed cell death;0.000515343596507888!GO:0003899;DNA-directed RNA polymerase activity;0.000532794711846737!GO:0065009;regulation of a molecular function;0.00053873638954083!GO:0007264;small GTPase mediated signal transduction;0.000548181701503907!GO:0051187;cofactor catabolic process;0.000548181701503907!GO:0015980;energy derivation by oxidation of organic compounds;0.000552736236233877!GO:0009892;negative regulation of metabolic process;0.000602640497496625!GO:0009165;nucleotide biosynthetic process;0.000650433648260656!GO:0016310;phosphorylation;0.000677826317798212!GO:0030134;ER to Golgi transport vesicle;0.00071378943075206!GO:0008250;oligosaccharyl transferase complex;0.000724887994236286!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000745082233348764!GO:0000785;chromatin;0.000821509853419699!GO:0009109;coenzyme catabolic process;0.000833115369286158!GO:0016568;chromatin modification;0.000850520830455125!GO:0000314;organellar small ribosomal subunit;0.000875298688712393!GO:0005763;mitochondrial small ribosomal subunit;0.000875298688712393!GO:0006261;DNA-dependent DNA replication;0.000903363323595107!GO:0003729;mRNA binding;0.00103655065644308!GO:0006672;ceramide metabolic process;0.00106593975689055!GO:0008186;RNA-dependent ATPase activity;0.00116636468146682!GO:0051920;peroxiredoxin activity;0.00125488317184605!GO:0045454;cell redox homeostasis;0.00132953386752064!GO:0010468;regulation of gene expression;0.00135661938249002!GO:0000075;cell cycle checkpoint;0.00142496863459137!GO:0007093;mitotic cell cycle checkpoint;0.00144020360805091!GO:0030127;COPII vesicle coat;0.00145167989905095!GO:0012507;ER to Golgi transport vesicle membrane;0.00145167989905095!GO:0000775;chromosome, pericentric region;0.00152972718952148!GO:0008632;apoptotic program;0.0015395506553496!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00160395495655244!GO:0045045;secretory pathway;0.00164426731862653!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00173247315046715!GO:0005791;rough endoplasmic reticulum;0.00180954950925706!GO:0030659;cytoplasmic vesicle membrane;0.00180954950925706!GO:0005657;replication fork;0.00184306418893445!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188297769674588!GO:0003684;damaged DNA binding;0.00191712712352409!GO:0007051;spindle organization and biogenesis;0.00192156626901501!GO:0031968;organelle outer membrane;0.00192156626901501!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00200581663917494!GO:0046489;phosphoinositide biosynthetic process;0.00212462349766361!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021472127278978!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021472127278978!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021472127278978!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218323056518955!GO:0048500;signal recognition particle;0.00226984421196774!GO:0046474;glycerophospholipid biosynthetic process;0.00226984421196774!GO:0019867;outer membrane;0.00229719403641016!GO:0004576;oligosaccharyl transferase activity;0.00237154672880556!GO:0006892;post-Golgi vesicle-mediated transport;0.00259924630848157!GO:0006334;nucleosome assembly;0.00260338337225307!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00265118562128478!GO:0030663;COPI coated vesicle membrane;0.00267838508860201!GO:0030126;COPI vesicle coat;0.00267838508860201!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0026955111372961!GO:0046519;sphingoid metabolic process;0.00275241006164833!GO:0006414;translational elongation;0.00278669559031744!GO:0004674;protein serine/threonine kinase activity;0.00281846614826907!GO:0019318;hexose metabolic process;0.00297043485362116!GO:0004004;ATP-dependent RNA helicase activity;0.0030648853627551!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00311889030817659!GO:0003746;translation elongation factor activity;0.00315026292528009!GO:0007006;mitochondrial membrane organization and biogenesis;0.00315553857483741!GO:0004527;exonuclease activity;0.00326749865016921!GO:0006007;glucose catabolic process;0.00326749865016921!GO:0031625;ubiquitin protein ligase binding;0.00332963233138027!GO:0008637;apoptotic mitochondrial changes;0.00333884374249701!GO:0042802;identical protein binding;0.00343978096293377!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00349839525928944!GO:0009615;response to virus;0.00350836205519453!GO:0043492;ATPase activity, coupled to movement of substances;0.0035530784747823!GO:0030036;actin cytoskeleton organization and biogenesis;0.00360899239509761!GO:0005048;signal sequence binding;0.00362862065901547!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00376809948147611!GO:0006917;induction of apoptosis;0.00388703131544853!GO:0030658;transport vesicle membrane;0.00388910101172218!GO:0005996;monosaccharide metabolic process;0.00398451936343899!GO:0016363;nuclear matrix;0.00405046162227356!GO:0031497;chromatin assembly;0.00424496695420541!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00435423971848278!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00451644094049784!GO:0043681;protein import into mitochondrion;0.00451644094049784!GO:0005874;microtubule;0.00465886555107207!GO:0044452;nucleolar part;0.0046910263723763!GO:0032940;secretion by cell;0.00472434741331482!GO:0005684;U2-dependent spliceosome;0.00475069182602089!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00489940920731841!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0048996635569889!GO:0045047;protein targeting to ER;0.0048996635569889!GO:0035258;steroid hormone receptor binding;0.00492699437000907!GO:0005741;mitochondrial outer membrane;0.00497263158326118!GO:0005905;coated pit;0.00497848803857157!GO:0005885;Arp2/3 protein complex;0.00519175419195849!GO:0012502;induction of programmed cell death;0.00520700168370531!GO:0000049;tRNA binding;0.00529317967102437!GO:0008312;7S RNA binding;0.0055266094569806!GO:0004177;aminopeptidase activity;0.0056641214122641!GO:0030521;androgen receptor signaling pathway;0.0056641214122641!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00566704660401874!GO:0030137;COPI-coated vesicle;0.00568381802139622!GO:0006839;mitochondrial transport;0.005694077744906!GO:0000776;kinetochore;0.005694077744906!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00570560357257104!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00582667599474305!GO:0018196;peptidyl-asparagine modification;0.00593598967682152!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00593598967682152!GO:0051087;chaperone binding;0.00651879672908027!GO:0051540;metal cluster binding;0.00651879672908027!GO:0051536;iron-sulfur cluster binding;0.00651879672908027!GO:0007010;cytoskeleton organization and biogenesis;0.00657879597185115!GO:0048487;beta-tubulin binding;0.00665781721280069!GO:0044433;cytoplasmic vesicle part;0.00667065152480311!GO:0016584;nucleosome positioning;0.00705990506183229!GO:0032774;RNA biosynthetic process;0.00707111020492146!GO:0046822;regulation of nucleocytoplasmic transport;0.00710216440487187!GO:0008022;protein C-terminus binding;0.00725060464062912!GO:0008629;induction of apoptosis by intracellular signals;0.00728615358936596!GO:0008610;lipid biosynthetic process;0.00748035656593991!GO:0003711;transcription elongation regulator activity;0.00765154592425782!GO:0030176;integral to endoplasmic reticulum membrane;0.00768021187916024!GO:0006351;transcription, DNA-dependent;0.00772666782473878!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00776498137621811!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00777925426756564!GO:0051252;regulation of RNA metabolic process;0.00784725011968824!GO:0012506;vesicle membrane;0.00792588692913815!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00792588692913815!GO:0015002;heme-copper terminal oxidase activity;0.00792588692913815!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00792588692913815!GO:0004129;cytochrome-c oxidase activity;0.00792588692913815!GO:0006626;protein targeting to mitochondrion;0.00800220404724851!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00818061190218656!GO:0031072;heat shock protein binding;0.00860828666299123!GO:0043624;cellular protein complex disassembly;0.00860828666299123!GO:0043284;biopolymer biosynthetic process;0.00872920493134211!GO:0050681;androgen receptor binding;0.00880040121636352!GO:0048468;cell development;0.00909246282224888!GO:0016044;membrane organization and biogenesis;0.00910153814704078!GO:0006352;transcription initiation;0.00918215453648106!GO:0003677;DNA binding;0.00919436927455347!GO:0006405;RNA export from nucleus;0.00937485335324882!GO:0030660;Golgi-associated vesicle membrane;0.00973986931171914!GO:0031902;late endosome membrane;0.0101611583150368!GO:0016481;negative regulation of transcription;0.0101849310445924!GO:0051329;interphase of mitotic cell cycle;0.0102077436418133!GO:0004197;cysteine-type endopeptidase activity;0.0104693545896499!GO:0000059;protein import into nucleus, docking;0.010475665905266!GO:0006650;glycerophospholipid metabolic process;0.0111025741964831!GO:0031418;L-ascorbic acid binding;0.0111255451666021!GO:0016272;prefoldin complex;0.0114162237578665!GO:0000209;protein polyubiquitination;0.0120642488307024!GO:0031901;early endosome membrane;0.0121089109430477!GO:0046983;protein dimerization activity;0.0124065715785372!GO:0043488;regulation of mRNA stability;0.0125915406431984!GO:0043487;regulation of RNA stability;0.0125915406431984!GO:0006611;protein export from nucleus;0.0126749526384769!GO:0001836;release of cytochrome c from mitochondria;0.0129966547104624!GO:0050662;coenzyme binding;0.0131694804718281!GO:0032984;macromolecular complex disassembly;0.0135572028396505!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0138571279471012!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0138571279471012!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0138571279471012!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0146261246259068!GO:0008139;nuclear localization sequence binding;0.0146737679345286!GO:0030029;actin filament-based process;0.0150534380596525!GO:0008383;manganese superoxide dismutase activity;0.015122489933953!GO:0001315;age-dependent response to reactive oxygen species;0.015122489933953!GO:0006376;mRNA splice site selection;0.0155950723577237!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155950723577237!GO:0030032;lamellipodium biogenesis;0.0159133683479879!GO:0006417;regulation of translation;0.016066435642044!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0166203414898989!GO:0051052;regulation of DNA metabolic process;0.0166617537155391!GO:0006096;glycolysis;0.0167805771224374!GO:0051059;NF-kappaB binding;0.0168333554408455!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0169252936833319!GO:0007030;Golgi organization and biogenesis;0.0170279901036477!GO:0004192;cathepsin D activity;0.0174032589075983!GO:0045449;regulation of transcription;0.0176495127032795!GO:0005975;carbohydrate metabolic process;0.0179002115547774!GO:0045947;negative regulation of translational initiation;0.0179002115547774!GO:0007004;telomere maintenance via telomerase;0.0179446045453185!GO:0006984;ER-nuclear signaling pathway;0.0179610620544392!GO:0006310;DNA recombination;0.0179869431902326!GO:0043022;ribosome binding;0.0183245565654445!GO:0030031;cell projection biogenesis;0.0184917107981729!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0186421195573617!GO:0050790;regulation of catalytic activity;0.0196822170139087!GO:0006904;vesicle docking during exocytosis;0.0198417824146605!GO:0008033;tRNA processing;0.0199350528014251!GO:0022406;membrane docking;0.0201987962655663!GO:0048278;vesicle docking;0.0201987962655663!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0203113049963335!GO:0016251;general RNA polymerase II transcription factor activity;0.0210911683896826!GO:0007021;tubulin folding;0.0216252177632476!GO:0015631;tubulin binding;0.0218340026729691!GO:0016301;kinase activity;0.0225988968376406!GO:0045603;positive regulation of endothelial cell differentiation;0.0228719816635928!GO:0043241;protein complex disassembly;0.0228974454961439!GO:0004300;enoyl-CoA hydratase activity;0.0228974454961439!GO:0043130;ubiquitin binding;0.0230309715969164!GO:0032182;small conjugating protein binding;0.0230309715969164!GO:0032508;DNA duplex unwinding;0.0230309715969164!GO:0032392;DNA geometric change;0.0230309715969164!GO:0048518;positive regulation of biological process;0.0236464280515551!GO:0006383;transcription from RNA polymerase III promoter;0.0236464280515551!GO:0006740;NADPH regeneration;0.0240591131212867!GO:0006098;pentose-phosphate shunt;0.0240591131212867!GO:0007040;lysosome organization and biogenesis;0.0241901850557578!GO:0005876;spindle microtubule;0.0242532520644616!GO:0000096;sulfur amino acid metabolic process;0.024364042952189!GO:0006595;polyamine metabolic process;0.0246767185327504!GO:0019752;carboxylic acid metabolic process;0.0254103533440481!GO:0051090;regulation of transcription factor activity;0.0263926081251069!GO:0006354;RNA elongation;0.0263991805512777!GO:0005637;nuclear inner membrane;0.0270298925203965!GO:0006506;GPI anchor biosynthetic process;0.0274893746124686!GO:0046966;thyroid hormone receptor binding;0.0286468400923189!GO:0046483;heterocycle metabolic process;0.0286468400923189!GO:0005521;lamin binding;0.0293084738162966!GO:0051101;regulation of DNA binding;0.0293084738162966!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.029399322592227!GO:0051287;NAD binding;0.0298905094940982!GO:0032200;telomere organization and biogenesis;0.0300327950027904!GO:0000723;telomere maintenance;0.0300327950027904!GO:0005774;vacuolar membrane;0.0300327950027904!GO:0007050;cell cycle arrest;0.0304343582157772!GO:0032507;maintenance of cellular protein localization;0.0304464687278755!GO:0030132;clathrin coat of coated pit;0.0304464687278755!GO:0022411;cellular component disassembly;0.0305471534554973!GO:0006082;organic acid metabolic process;0.0310461954999687!GO:0032594;protein transport within lipid bilayer;0.0314082483243639!GO:0032907;transforming growth factor-beta3 production;0.0314082483243639!GO:0032596;protein transport into lipid raft;0.0314082483243639!GO:0032910;regulation of transforming growth factor-beta3 production;0.0314082483243639!GO:0032595;B cell receptor transport within lipid bilayer;0.0314082483243639!GO:0033606;chemokine receptor transport within lipid bilayer;0.0314082483243639!GO:0032600;chemokine receptor transport out of lipid raft;0.0314082483243639!GO:0032599;protein transport out of lipid raft;0.0314082483243639!GO:0032597;B cell receptor transport into lipid raft;0.0314082483243639!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0314082483243639!GO:0031461;cullin-RING ubiquitin ligase complex;0.0314737495562263!GO:0008601;protein phosphatase type 2A regulator activity;0.0316425701111884!GO:0007242;intracellular signaling cascade;0.0319499937288247!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0322077135382091!GO:0042770;DNA damage response, signal transduction;0.0326185835978381!GO:0006505;GPI anchor metabolic process;0.0326185835978381!GO:0006497;protein amino acid lipidation;0.0327975650321145!GO:0006665;sphingolipid metabolic process;0.0330021181015703!GO:0051092;activation of NF-kappaB transcription factor;0.0330772654556303!GO:0030968;unfolded protein response;0.0335868187680548!GO:0006289;nucleotide-excision repair;0.0336913990641738!GO:0046365;monosaccharide catabolic process;0.0338281441986752!GO:0022890;inorganic cation transmembrane transporter activity;0.0342949192910497!GO:0030384;phosphoinositide metabolic process;0.0342949192910497!GO:0009889;regulation of biosynthetic process;0.0344083527962445!GO:0005669;transcription factor TFIID complex;0.0348245330340296!GO:0007052;mitotic spindle organization and biogenesis;0.0348568864945061!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0350623935587774!GO:0009067;aspartate family amino acid biosynthetic process;0.0356375423359589!GO:0045893;positive regulation of transcription, DNA-dependent;0.035814783604914!GO:0048144;fibroblast proliferation;0.0361389250426588!GO:0048145;regulation of fibroblast proliferation;0.0361389250426588!GO:0005784;translocon complex;0.0364477741762623!GO:0051539;4 iron, 4 sulfur cluster binding;0.0369026047395686!GO:0031326;regulation of cellular biosynthetic process;0.0370956943217605!GO:0030433;ER-associated protein catabolic process;0.0378394408633963!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0378394408633963!GO:0000922;spindle pole;0.0383440999131086!GO:0022415;viral reproductive process;0.0388179315970078!GO:0019206;nucleoside kinase activity;0.0394134528892038!GO:0006643;membrane lipid metabolic process;0.0394923865960277!GO:0030118;clathrin coat;0.0396533963373856!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0398081410532491!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0398412612122032!GO:0006769;nicotinamide metabolic process;0.0403143742791305!GO:0051325;interphase;0.0405852603309134!GO:0006144;purine base metabolic process;0.0413254184555009!GO:0005832;chaperonin-containing T-complex;0.0413869804599437!GO:0030027;lamellipodium;0.0420789612945615!GO:0004563;beta-N-acetylhexosaminidase activity;0.0428472864123695!GO:0006118;electron transport;0.0429231914405056!GO:0000118;histone deacetylase complex;0.0429231914405056!GO:0008097;5S rRNA binding;0.0430174428323158!GO:0007017;microtubule-based process;0.0438834852826678!GO:0008408;3'-5' exonuclease activity;0.0448719938028704!GO:0019783;small conjugating protein-specific protease activity;0.0448719938028704!GO:0016860;intramolecular oxidoreductase activity;0.0453028717324343!GO:0019320;hexose catabolic process;0.0453028717324343!GO:0042147;retrograde transport, endosome to Golgi;0.0456858898206111!GO:0006701;progesterone biosynthetic process;0.0457616267940558!GO:0008094;DNA-dependent ATPase activity;0.0458868111489948!GO:0006733;oxidoreduction coenzyme metabolic process;0.046309301635993!GO:0000062;acyl-CoA binding;0.0465339053136428!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0465339053136428!GO:0030880;RNA polymerase complex;0.0471902103580323!GO:0046979;TAP2 binding;0.0474201442145747!GO:0046977;TAP binding;0.0474201442145747!GO:0046978;TAP1 binding;0.0474201442145747!GO:0030518;steroid hormone receptor signaling pathway;0.0475243063360551!GO:0030125;clathrin vesicle coat;0.0484343805921251!GO:0030665;clathrin coated vesicle membrane;0.0484343805921251!GO:0007059;chromosome segregation;0.0486209531653038!GO:0051881;regulation of mitochondrial membrane potential;0.0490752054390625!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0492319159432091!GO:0008361;regulation of cell size;0.0498998941260385!GO:0005758;mitochondrial intermembrane space;0.0498998941260385
 +
|sample_id=10471
 +
|sample_note=
 +
|sample_sex=male
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=kidney
 +
|top_motifs=HIF1A:2.68710315906;PITX1..3:2.13435977508;ZBTB16:2.10102358872;POU1F1:1.76055324289;FOXQ1:1.61013812806;EVI1:1.57734213398;NKX6-1,2:1.43224850076;PDX1:1.36378147159;AHR_ARNT_ARNT2:1.21850732618;IRF1,2:1.21779983721;NKX2-3_NKX2-5:1.15938870595;LHX3,4:1.14928351728;FOXD3:1.14089107767;HNF1A:1.14061549349;FOXP1:1.13555464927;bHLH_family:1.09149752643;PBX1:1.08408359509;XCPE1{core}:1.07817750875;TEF:1.05173686967;ONECUT1,2:1.01854655465;SP1:1.01461089148;PPARG:0.982890525679;ADNP_IRX_SIX_ZHX:0.981820238914;IKZF2:0.927671074033;ATF6:0.923556445756;DBP:0.914111783597;NR6A1:0.905444188013;RBPJ:0.903534852992;FOX{D1,D2}:0.867946507803;CDX1,2,4:0.848707052257;AIRE:0.848671845211;HES1:0.835560769583;BPTF:0.786931951509;EP300:0.765772132557;IRF7:0.756322477673;HBP1_HMGB_SSRP1_UBTF:0.75313099504;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.733495714072;LMO2:0.718474966602;NFKB1_REL_RELA:0.662480199271;STAT1,3:0.658984431024;HNF4A_NR2F1,2:0.611786421636;CDC5L:0.601614307953;EN1,2:0.599351646118;ELK1,4_GABP{A,B1}:0.574001285028;TP53:0.567856527894;FOX{F1,F2,J1}:0.504547248476;NRF1:0.498109210376;HMGA1,2:0.489974723059;STAT5{A,B}:0.48068657009;TOPORS:0.466830800069;HOXA9_MEIS1:0.429173084407;HSF1,2:0.408449251581;RXRA_VDR{dimer}:0.40753918704;UFEwm:0.388381939079;RREB1:0.385810221979;HAND1,2:0.377908651413;EBF1:0.36713624629;MYB:0.356204082018;ZNF384:0.35545836084;STAT2,4,6:0.322882975649;FOXP3:0.307113054204;ZNF423:0.263222822325;NKX2-2,8:0.251922330083;OCT4_SOX2{dimer}:0.213829941286;RXR{A,B,G}:0.187391491823;ZNF143:0.17773786867;SNAI1..3:0.169655193791;ZIC1..3:0.167001040449;ZEB1:0.15918798158;PAX4:0.146615304436;NKX2-1,4:0.122829153272;FOXO1,3,4:0.0994040011963;TLX2:0.0897752591913;FOXL1:0.038660975004;NFE2:0.0352548868968;MYOD1:0.00941751197285;XBP1:0.00474833313891;POU3F1..4:0.00128864392857;TEAD1:-0.000161216065254;ATF2:-0.0172969849601;PAX1,9:-0.0214919288745;ALX1:-0.0368236991869;RFX1:-0.0470315862884;NR3C1:-0.0718767953962;HOX{A6,A7,B6,B7}:-0.0746660359662;E2F1..5:-0.0909812400388;ALX4:-0.0963984697889;FOSL2:-0.0992333116452;ATF4:-0.100969983788;ATF5_CREB3:-0.116127468792;NFY{A,B,C}:-0.124584256771;PAX6:-0.143127691002;FOXM1:-0.150397378953;BACH2:-0.151552763414;CEBPA,B_DDIT3:-0.159555331645;FOS_FOS{B,L1}_JUN{B,D}:-0.160385724402;PRRX1,2:-0.174990633998;PAX2:-0.207947302912;ZFP161:-0.252198848388;CUX2:-0.285138846224;TAL1_TCF{3,4,12}:-0.285241242981;FOXN1:-0.287570017253;NKX3-1:-0.288316444821;GFI1:-0.291837712187;RORA:-0.302455365854;MTF1:-0.313781516344;POU5F1:-0.321478626304;PRDM1:-0.32779752185;NFE2L1:-0.350308559784;GTF2I:-0.36538008877;ESRRA:-0.374472415907;NR5A1,2:-0.383351724174;MEF2{A,B,C,D}:-0.38563546267;SOX5:-0.387843869893;ZBTB6:-0.409467445496;ZNF148:-0.423737994178;ELF1,2,4:-0.424722090518;NKX3-2:-0.426750680033;RFX2..5_RFXANK_RFXAP:-0.431915119477;KLF4:-0.447997365043;ARID5B:-0.45358767182;NFIL3:-0.459349244266;GFI1B:-0.487249829731;NFE2L2:-0.493328988512;POU6F1:-0.49494550274;SREBF1,2:-0.5057598178;CREB1:-0.514940788232;GATA6:-0.524919798909;TBP:-0.529593991613;PATZ1:-0.541736493353;POU2F1..3:-0.545310820978;HLF:-0.546739831458;IKZF1:-0.559928385459;DMAP1_NCOR{1,2}_SMARC:-0.599297947727;NANOG:-0.601237076533;MZF1:-0.612787968446;TFAP2{A,C}:-0.618799944934;REST:-0.62932270278;GZF1:-0.629329791892;HOX{A5,B5}:-0.634897219271;RUNX1..3:-0.648855073184;SMAD1..7,9:-0.66138664329;NFATC1..3:-0.6659581179;MYFfamily:-0.667620722351;MAZ:-0.669826517296;TBX4,5:-0.687417346248;SPI1:-0.701888005173;MTE{core}:-0.712293576567;HOX{A4,D4}:-0.751958649172;MYBL2:-0.752036924589;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.75543945909;ESR1:-0.762972357254;FOXA2:-0.763074687903;SPIB:-0.772566533247;NFIX:-0.773269400263;SOX2:-0.775856539458;ETS1,2:-0.78936865632;GLI1..3:-0.803100648802;TLX1..3_NFIC{dimer}:-0.824263170864;HIC1:-0.82732554917;LEF1_TCF7_TCF7L1,2:-0.831038855709;AR:-0.832522398994;SOX{8,9,10}:-0.833329823812;TGIF1:-0.900729865214;PAX3,7:-0.987188775378;SRF:-1.00254402562;TFAP2B:-1.01613472456;YY1:-1.08017476666;JUN:-1.11982517804;PAX5:-1.12017232417;BREu{core}:-1.12404760328;SOX17:-1.12868413202;EGR1..3:-1.15486629101;GATA4:-1.20073089227;T:-1.25353350606;TFCP2:-1.26098035068;VSX1,2:-1.27341818943;MED-1{core}:-1.27904949335;GTF2A1,2:-1.28397216489;SPZ1:-1.34200368241;CRX:-1.35034387066;ZNF238:-1.36643122655;FOX{I1,J2}:-1.36937685083;NHLH1,2:-1.37809574479;TFDP1:-1.37888049482;MAFB:-1.38098995239;PAX8:-1.41466247286;NR1H4:-1.63863089806;GCM1,2:-1.66260760959;HMX1:-1.9341108074;NANOG{mouse}:-2.25309767987;TFAP4:-2.43762009262
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10471-106I3;search_select_hide=table117:FF:10471-106I3
 
}}
 
}}

Latest revision as of 05:25, 3 June 2020

Name:renal cell carcinoma cell line:TUHR10TKB
Species:Human (Homo sapiens)
Library ID:CNhs11257
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexmale
age69
cell typeunclassifiable
cell lineTUHR10TKB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005261
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11257 CAGE DRX007991 DRR008863
Accession ID Hg19

Library idBAMCTSS
CNhs11257 DRZ000288 DRZ001673
Accession ID Hg38

Library idBAMCTSS
CNhs11257 DRZ011638 DRZ013023
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.12
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.216
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0287
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00309
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.191
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.169
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.858
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0331
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.114
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.00764
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.17
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0637
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.17
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.858
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0944
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11257

Jaspar motifP-value
MA0002.20.0948
MA0003.10.864
MA0004.10.324
MA0006.10.0813
MA0007.10.117
MA0009.10.047
MA0014.10.26
MA0017.10.348
MA0018.20.128
MA0019.10.7
MA0024.10.575
MA0025.10.563
MA0027.10.87
MA0028.10.0137
MA0029.10.481
MA0030.10.799
MA0031.10.152
MA0035.20.487
MA0038.10.456
MA0039.20.00146
MA0040.10.489
MA0041.10.3
MA0042.10.532
MA0043.10.316
MA0046.12.49638e-7
MA0047.20.801
MA0048.10.144
MA0050.15.66318e-16
MA0051.13.09366e-10
MA0052.10.0438
MA0055.10.00271
MA0057.10.243
MA0058.10.162
MA0059.10.0555
MA0060.10.0875
MA0061.12.83753e-4
MA0062.20.164
MA0065.20.0828
MA0066.10.751
MA0067.10.814
MA0068.10.0171
MA0069.10.43
MA0070.10.498
MA0071.10.606
MA0072.10.301
MA0073.10.418
MA0074.10.528
MA0076.10.0221
MA0077.10.387
MA0078.10.0146
MA0079.20.435
MA0080.22.77783e-10
MA0081.10.00706
MA0083.10.00137
MA0084.10.226
MA0087.10.215
MA0088.10.16
MA0090.10.415
MA0091.10.021
MA0092.10.276
MA0093.10.323
MA0099.20.122
MA0100.10.906
MA0101.18.98368e-4
MA0102.20.333
MA0103.10.0083
MA0104.20.0544
MA0105.14.12581e-4
MA0106.10.00221
MA0107.10.00196
MA0108.22.02888e-7
MA0111.10.611
MA0112.20.225
MA0113.10.351
MA0114.10.00318
MA0115.10.553
MA0116.10.0658
MA0117.10.939
MA0119.10.512
MA0122.10.518
MA0124.10.305
MA0125.10.131
MA0131.10.513
MA0135.10.533
MA0136.12.17602e-7
MA0137.20.927
MA0138.20.283
MA0139.10.392
MA0140.10.111
MA0141.10.53
MA0142.10.0354
MA0143.10.202
MA0144.10.354
MA0145.10.362
MA0146.10.0819
MA0147.10.0183
MA0148.10.108
MA0149.10.275
MA0150.10.959
MA0152.10.851
MA0153.11.49262e-6
MA0154.10.4
MA0155.10.577
MA0156.16.28339e-4
MA0157.10.129
MA0159.10.0638
MA0160.10.857
MA0162.10.472
MA0163.10.151
MA0164.10.928
MA0258.10.36
MA0259.10.00143



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11257

Novel motifP-value
10.25
100.0763
1000.00731
1010.132
1020.826
1030.314
1040.622
1050.752
1060.113
1070.364
1080.747
1090.189
110.969
1100.0372
1110.153
1120.379
1130.276
1140.684
1150.797
1160.882
1170.0179
1180.00138
1190.385
120.115
1200.655
1210.834
1220.0631
1230.428
1240.585
1250.452
1260.498
1270.77
1280.0823
1290.447
133.63333e-4
1300.122
1310.762
1320.47
1330.161
1340.192
1350.0119
1360.712
1370.546
1380.913
1390.76
140.66
1400.144
1410.896
1420.133
1430.247
1440.804
1450.606
1460.205
1470.418
1480.554
1490.607
150.328
1500.743
1510.934
1520.71
1530.446
1540.954
1550.469
1560.984
1570.405
1580.39
1590.264
160.957
1600.0819
1610.346
1620.528
1630.191
1640.0139
1650.436
1660.146
1670.381
1680.0976
1690.379
170.528
180.0866
190.86
20.441
200.00777
210.347
220.961
230.302
240.809
250.633
260.0853
270.23
280.868
290.00781
30.0607
300.38
310.479
320.0887
330.348
340.203
350.439
360.0565
370.34
380.68
390.703
40.791
400.0349
410.0604
420.607
430.611
440.191
450.535
460.904
470.752
480.755
490.58
50.749
500.91
510.721
520.245
530.846
540.287
550.535
560.556
570.216
580.264
590.75
60.164
600.756
610.141
620.945
630.971
640.945
650.878
660.974
670.491
680.773
690.13
70.696
700.268
710.00489
720.999
730.541
740.272
750.0694
760.0159
770.468
780.0788
790.759
80.499
800.00321
810.821
820.871
830.996
840.725
850.794
860.776
870.258
880.636
890.366
90.0325
900.349
910.973
920.805
930.989
940.982
950.173
960.558
970.723
980.85
990.587



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11257


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0103732 (TUHR-10TKB cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)