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Difference between revisions of "FF:10790-110H7"

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{{f5samples
 
{{f5samples
|id=FF:10790-110H7
+
|DRA_sample_Accession=CAGE@SAMD00005042
|name=teratocarcinoma cell line:NCC-IT-A3
+
|accession_numbers=CAGE;DRX008019;DRR008891;DRZ000316;DRZ001701;DRZ011666;DRZ013051
|sample_id=10790
 
|rna_tube_id=110H7
 
|rna_box=110
 
|rna_position=H7
 
|sample_cell_lot=
 
|sample_cell_catalog=jcrb1005
 
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
 
|rna_lot_number=
 
|rna_catalog_number=
 
|sample_species=Human (Homo sapiens)
 
|sample_strain=
 
|sample_dev_stage=
 
|sample_tissue=mediastinum
 
|sample_donor(cell lot)=
 
|sample_sex=male
 
|sample_age=24
 
|sample_ethnicity=J
 
|rna_rin=
 
|rna_od260/230=2.14
 
|rna_od260/280=2.07
 
|sample_cell_type=germ cell
 
|sample_cell_line=NCC-IT-A3
 
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 
|sample_experimental_condition=
 
|sample_disease=teratocarcinoma
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=147.03525
 
|rna_concentration=1.96047
 
|sample_note=
 
|profile_hcage=CNhs11878,LSID830,release010,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
 
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:305,DOID:3095,DOID:4
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
+
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100306
 +
|comment=
 +
|created_by=
 +
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 +
|def=
 +
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.19!154.83!SOX2;;chr6:10415484..10415508,-!p3@TFAP2A!2.15!140.84!TFAP2A;;chrX:136648279..136648295,+!p1@ZIC3!2.14!136.58!ZIC3;;chr20:31350184..31350200,+!p1@DNMT3B!2.10!251.75!DNMT3B;;chrX:136648643..136648711,+!p2@ZIC3!1.98!93.53!ZIC3;;chr14:57277178..57277203,-!p1@OTX2!1.89!76.27!OTX2;;chr6:31138439..31138475,-!p1@POU5F1!1.88!74.19!POU5F1;;chr5:2751762..2751784,-!p1@IRX2!1.87!73.10!IRX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.84!83.15!TFAP2A;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.78!58.68!NANOGP1;;chr1:164528687..164528711,+!p6@PBX1!1.73!61.63!PBX1;;chr3:181429741..181429767,+!p2@SOX2!1.73!52.88!SOX2;;chr5:153857778..153857794,-!p1@HAND1!1.72!51.35!HAND1;;chr15:57511609..57511651,+!p2@TCF12!1.68!77.25!TCF12;;chrX:136648297..136648319,+!p3@ZIC3!1.68!46.77!ZIC3;;chr5:2751785..2751808,-!p2@IRX2!1.66!44.91!IRX2;;chr12:19556998..19557013,+!p6@AEBP2!1.62!40.97!AEBP2;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.57!TFAP2A;;chr8:70983476..70983493,-!p1@PRDM14!1.54!33.33!PRDM14;;chr8:37963466..37963506,+!p3@ASH2L!1.53!40.87!ASH2L;;chr2:16080659..16080685,+!p1@MYCN!1.52!32.34!MYCN;;chr10:135043702..135043729,+!p1@UTF1!1.47!28.30!UTF1;;chr2:16081912..16081931,+!p2@MYCN!1.44!26.77!MYCN;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.90!DLX5;;chr4:188916918..188916942,+!p1@ZFP42!1.41!24.91!ZFP42;;chr1:151032922..151032951,+!p2@MLLT11!1.40!39.12!MLLT11;;chr6:391743..391759,+!p1@IRF4!1.40!24.26!IRF4;;chr20:50418972..50419029,-!p1@SALL4!1.38!22.95!SALL4;;chrX:136650899..136650918,+!p7@ZIC3!1.36!21.96!ZIC3;;chr5:3595977..3595999,+!p1@IRX1!1.36!21.74!IRX1;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr2:25475120..25475176,-!p2@DNMT3A!1.35!28.96!DNMT3A;;chr1:158975744..158975769,+!p10@IFI16!1.33!20.54!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.56!ZNF90;;chr2:5832508..5832524,+!p1@SOX11!1.32!20.00!SOX11;;chr19:22193731..22193751,-!p1@ZNF208!1.31!19.45!ZNF208;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.30!177.34!ZNF595;;chr4:299227..299272,-!p1@ZNF732!1.30!18.90!ZNF732;;chr12:19556960..19556982,+!p10@AEBP2!1.27!17.81!AEBP2;;chr14:57272369..57272391,-!p2@OTX2!1.26!17.37!OTX2;;chr12:7941989..7942014,+!p1@NANOG!1.26!17.15!NANOG;;chr1:247171316..247171336,-!p3@ZNF695!1.25!25.02!ZNF695;;chr8:70983443..70983460,-!p2@PRDM14!1.25!16.61!PRDM14;;chrX:136648768..136648781,+!p6@ZIC3!1.22!15.41!ZIC3;;chr12:66218183..66218209,+!p4@HMGA2!1.19!27.43!HMGA2;;chrX:131547625..131547644,-!p4@MBNL3!1.19!14.64!MBNL3;;chr13:95364784..95364806,-!p1@SOX21!1.19!14.53!SOX21;;chr8:37963407..37963454,+!p2@ASH2L!1.18!41.96!ASH2L;;chr9:114287433..114287513,+!p1@ZNF483!1.18!36.82!ZNF483;;chrX:136648554..136648576,+!p4@ZIC3!1.18!14.10!ZIC3;;chr2:60780607..60780624,-!p2@BCL11A!1.17!41.74!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!1.15!21.85!ZNF492;;chr14:90085820..90085840,-!p6@FOXN3!1.15!13.11!FOXN3;;chr20:50419055..50419066,-!p3@SALL4!1.14!12.89!SALL4;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.90!MLLT11;;chr17:41623009..41623053,-!p4@ETV4!1.11!19.45!ETV4;;chr17:7493405..7493419,-!p1@SOX15!1.11!11.91!SOX15;;chr2:88752207..88752218,-!p1@FOXI3!1.11!11.91!FOXI3;;chrX:136648753..136648767,+!p5@ZIC3!1.10!11.47!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.08!10.93!DNMT3A;;chr5:3595934..3595957,+!p2@IRX1!1.07!10.82!IRX1;;chr1:247171347..247171366,-!p2@ZNF695!1.06!19.34!ZNF695;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.60!IRX1;;chrX:129402866..129402880,-!p1@ZNF280C!1.05!59.99!ZNF280C;;chr5:124082322..124082364,-!p1@ZNF608!1.05!26.44!ZNF608;;chr2:119604456..119604501,-!p2@EN1!1.04!10.05!EN1;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.62!ZNF680;;chrX:136648735..136648747,+!p9@ZIC3!1.03!9.83!ZIC3;;chr17:46132044..46132080,+!p4@NFE2L1!1.03!9.72!NFE2L1;;chr2:42795745..42795824,+!p1@MTA3!1.02!88.51!MTA3;;chr2:16082155..16082169,+!p3@MYCN!1.02!9.51!MYCN;;chr3:57234000..57234014,-!p1@HESX1!1.02!9.51!HESX1;;chrX:136648807..136648822,+!p8@ZIC3!1.02!9.51!ZIC3;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.16!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.01!20.54!SOHLH2;;chr2:60780753..60780800,-!p1@BCL11A!1.00!45.02!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.66!ETV4;;chrX:84499081..84499115,+!p2@ZNF711!1.00!13.55!ZNF711;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.22!HMGA2;;chr6:15246261..15246312,+!p1@JARID2!0.99!216.78!JARID2;;chr19:23433144..23433204,-!p1@ZNF724P!0.99!39.88!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.99!9.51!HMGA2;;chr7:64363638..64363667,+!p1@ZNF273!0.98!44.03!ZNF273;;chr17:41622925..41622976,-!p3@ETV4!0.98!13.00!ETV4;;chr1:151032957..151032968,+!p7@MLLT11!0.98!8.52!MLLT11;;chr18:56530136..56530199,+!p3@ZNF532!0.97!12.78!ZNF532;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.41!ZNF727;;chr19:58545454..58545498,+!p1@ZSCAN1!0.97!8.30!ZSCAN1;;chr12:7079780..7079791,-!p2@PHB2!0.96!43.71!PHB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.96!31.80!HNRPK;;chr19:58400344..58400364,-!p2@ZNF814!0.96!12.02!ZNF814;;chr6:137815524..137815537,-!p1@OLIG3!0.96!8.09!OLIG3;;chr15:74833584..74833626,+!p1@ARID3B!0.95!19.01!ARID3B;;chr11:6947720..6947812,+!p1@ZNF215!0.95!10.49!ZNF215;;chr2:60778035..60778060,-!p4@BCL11A!0.95!9.62!BCL11A;;chr8:70983506..70983522,-!p3@PRDM14!0.95!7.87!PRDM14;;chr3:48282587..48282603,+!p1@ZNF589!0.94!35.18!ZNF589;;chr14:55493763..55493824,-!p1@WDHD1!0.93!58.89!WDHD1;;chr6:15246200..15246214,+!p2@JARID2!0.93!21.53!JARID2;;chr12:66218255..66218304,+!p3@HMGA2!0.93!20.76!HMGA2;;chr2:121493425..121493474,+!p1@GLI2!0.93!17.05!GLI2;;chr12:66218573..66218596,+!p7@HMGA2!0.93!11.47!HMGA2;;chr15:74833547..74833567,+!p2@ARID3B!0.93!10.71!ARID3B;;chr3:71355163..71355209,-!p5@FOXP1!0.93!10.71!FOXP1;;chr11:63684602..63684664,-!p1@RCOR2!0.92!15.08!RCOR2;;chr8:73921136..73921151,+!p2@TERF1!0.92!11.15!TERF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.91!33.98!TAL1;;chr16:79634624..79634642,-!p1@MAF!0.91!29.50!MAF;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.25!HMGA2;;chr16:3149278..3149305,-!p1@ZSCAN10!0.91!7.21!ZSCAN10;;chr16:79633894..79633954,-!p3@MAF!0.90!13.77!MAF;;chr19:58629742..58629787,-!p2@ZSCAN18!0.90!6.88!ZSCAN18;;chr19:22034809..22034878,-!p2@ZNF43!0.89!24.80!ZNF43;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.74!TFAP2C;;chr5:124082279..124082319,-!p3@ZNF608!0.89!8.41!ZNF608;;chr6:10412392..10412409,-!p4@TFAP2A!0.89!7.87!TFAP2A;;chr6:10417454..10417460,-!p40@TFAP2A!0.89!6.77!TFAP2A;;chr16:79634595..79634620,-!p2@MAF!0.88!12.35!MAF;;chr11:120107344..120107351,+!p1@POU2F3!0.88!8.09!POU2F3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.94!ETV4;;chr1:91487013..91487070,-!p6@ZNF644!0.87!9.18!ZNF644;;chr1:38512457..38512474,-!p1@POU3F1!0.87!6.99!POU3F1;;chr11:128457446..128457461,-!p4@ETS1!0.87!6.45!ETS1;;chr7:96654026..96654061,-!p2@DLX5!0.87!6.34!DLX5;;chr6:10412576..10412599,-!p5@TFAP2A!0.86!6.23!TFAP2A;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.52!ZNF711;;chr1:8938709..8938720,-!p3@ENO1!0.84!308.78!ENO1;;chr19:58400372..58400411,-!p1@ZNF814!0.84!32.78!ZNF814;;chr7:64254834..64254854,+!p2@ZNF138!0.84!11.15!ZNF138;;chr17:41622834..41622883,-!p6@ETV4!0.84!7.21!ETV4;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr7:64254793..64254813,+!p1@ZNF138!0.82!69.06!ZNF138;;chr2:85360499..85360598,+!p1@TCF7L1!0.82!34.09!TCF7L1;;chr12:66218443..66218461,+!p8@HMGA2!0.82!7.32!HMGA2;;chr13:95364761..95364780,-!p2@SOX21!0.82!5.68!SOX21;;chr20:42295713..42295738,+!p2@MYBL2!0.80!34.20!MYBL2;;chr17:5015129..5015187,-!p1@ZNF232!0.80!31.36!ZNF232;;chr1:164528616..164528660,+!p5@PBX1!0.80!11.47!PBX1;;chr7:14028743..14028799,-!p3@ETV1!0.80!6.77!ETV1;;chr15:57511589..57511608,+!p4@TCF12!0.80!5.35!TCF12;;chr7:64838786..64838809,+!p2@ZNF92!0.79!32.01!ZNF92;;chr2:121493492..121493537,+!p2@GLI2!0.79!8.85!GLI2;;chr17:41622982..41623001,-!p11@ETV4!0.79!5.14!ETV4;;chr6:10417399..10417415,-!p32@TFAP2A!0.79!5.14!TFAP2A;;chr5:138609782..138609826,+!p5@MATR3!0.78!35.62!MATR3;;chr16:51185318..51185348,-!p2@SALL1!0.78!5.03!SALL1;;chr1:226595741..226595818,-!p1@PARP1!0.77!274.91!PARP1;;chr19:22605097..22605121,-!p2@ZNF98!0.77!4.92!ZNF98;;chr2:16080635..16080650,+!p4@MYCN!0.77!4.92!MYCN;;chr8:128428066..128428078,+!p1@POU5F1B!0.77!4.92!POU5F1B;;chr1:158979686..158979745,+!p1@IFI16!0.76!172.86!IFI16;;chr19:21264991..21265026,+!p1@ZNF714!0.76!34.31!ZNF714;;chr6:15246217..15246228,+!p3@JARID2!0.76!8.85!JARID2;;chr6:10417667..10417676,-!p54@TFAP2A!0.76!4.70!TFAP2A;;chr12:66218420..66218439,+!p12@HMGA2!0.76!4.70!HMGA2;;chr19:45579725..45579743,-!p1@ZNF296!0.75!22.62!ZNF296;;chr19:20959098..20959117,+!p1@ZNF66P!0.75!20.98!ZNF66P;;chr19:21265028..21265052,+!p2@ZNF714!0.75!8.74!ZNF714;;chr15:37390374..37390422,-!p9@MEIS2!0.75!5.90!MEIS2;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr7:64023441..64023462,-!p1@ZNF680!0.74!39.66!ZNF680;;chr6:20402102..20402152,+!p1@E2F3!0.74!20.43!E2F3;;chr19:20011744..20011770,+!p1@ZNF93!0.74!19.12!ZNF93;;chr4:206390..206444,+!p1@ZNF876P!0.74!8.52!ZNF876P;;chr2:166326200..166326216,+!p1@CSRNP3!0.74!6.88!CSRNP3;;chr8:60031762..60031803,-!p3@TOX!0.74!6.88!TOX;;chr3:126076264..126076305,-!p2@KLF15!0.74!6.56!KLF15;;chr7:96635178..96635181,+!p1@DLX6!0.74!4.48!DLX6;;chr19:22605136..22605154,-!p1@ZNF98!0.74!4.48!ZNF98;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.42!MYBL2;;chr19:20278012..20278034,+!p1@ZNF486!0.73!40.97!ZNF486;;chr1:204042233..204042249,+!p1@SOX13!0.73!30.70!SOX13;;chr7:42276822..42276895,-!p2@GLI3!0.73!14.20!GLI3;;chr7:64126535..64126559,+!p2@ZNF107!0.73!9.94!ZNF107;;chr19:22235279..22235301,+!p1@ZNF257!0.73!8.74!ZNF257;;chr19:20011775..20011800,+!p2@ZNF93!0.73!8.30!ZNF93;;chr1:43148625..43148710,+!p3@YBX1!0.73!8.30!YBX1;;chr2:5832493..5832507,+!p2@SOX11!0.73!4.37!SOX11;;chr2:37458692..37458745,-!p1@CEBPZ!0.72!179.96!CEBPZ;;chr12:2986206..2986258,-!p2@FOXM1!0.72!28.63!FOXM1;;chr20:45142154..45142227,-!p1@ZNF334!0.72!9.07!ZNF334;;chr3:126076242..126076257,-!p1@KLF15!0.72!5.46!KLF15;;chrX:84499056..84499078,+!p3@ZNF711!0.72!4.26!ZNF711;;chr19:23941647..23941672,-!p2@ZNF681!0.71!7.21!ZNF681;;chr3:48282607..48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0.22!2.40!PBX4;;chr11:8102749..8102769,+!p2@TUB!0.22!2.08!TUB;;chr1:33721873..33721898,+!p3@ZNF362!0.22!2.08!ZNF362;;chr15:42749722..42749739,-!p2@ZFP106!0.22!1.86!ZFP106;;chr18:53254566..53254567,-!p8@TCF4!0.22!1.64!TCF4;;chr17:47492203..47492214,-!p3@PHB!0.22!1.53!PHB;;chr20:42143136..42143161,+!p3@L3MBTL1!0.22!1.53!L3MBTL;;chr20:52185447..52185462,-!p2@ZNF217!0.22!1.53!ZNF217;;chr18:77867177..77867197,+!p3@ADNP2!0.22!1.42!ADNP2;;chr6:15245677..15245723,+!p6@JARID2!0.22!1.42!JARID2;;chr1:211432593..211432642,+!p6@RCOR3!0.22!1.31!RCOR3;;chr6:15249097..15249115,+!p7@JARID2!0.22!1.20!JARID2;;chr15:35280509..35280520,-!p2@ZNF770!0.22!1.20!ZNF770;;chr14:89029323..89029329,+!p4@ZC3H14!0.22!1.09!ZC3H14;;chr10:97890311..97890324,+!p6@ZNF518A!0.22!0.98!ZNF518A;;chr10:135043674..135043682,+!p9@UTF1!0.22!0.66!UTF1;;chr10:45496320..45496336,+!p3@ZNF22!0.22!0.66!ZNF22;;chr12:111471962..111471975,+!p2@CUX2!0.22!0.66!CUX2;;chr19:38210552..38210570,-!p2@ZNF607!0.22!0.66!ZNF607;;chr1:47779845..47779848,-!p3@STIL,p8@TAL1!0.22!0.66!TAL1;;chr1:78432503..78432507,-!p12@FUBP1!0.22!0.66!FUBP1;;chr20:50419112..50419117,-!p10@SALL4!0.22!0.66!SALL4;;chr2:171572729..171572745,+!p10@SP5!0.22!0.66!SP5;;chr2:66662396..66662407,+!p4@MEIS1!0.22!0.66!MEIS1;;chr3:170076246..170076261,+!p8@SKIL!0.22!0.66!SKIL;;chr4:206376..206387,+!p2@ZNF876P!0.22!0.66!ZNF876P;;chr4:26324474..26324501,+!p16@RBPJ!0.22!0.66!RBPJ;;chr9:16728327..16728338,-!p5@BNC2!0.22!0.66!BNC2;;chrX:47863414..47863425,-!p3@ZNF182!0.22!0.66!ZNF182;;chrX:147582254..147582320,+!p1@AFF2!0.22!0.66!AFF2;;chr16:51185544..51185555,-!p7@SALL1!0.22!0.66!SALL1;;chr16:52580953..52580992,-!p2@TOX3!0.22!0.66!TOX3;;chr5:124081979..124082021,-!p7@ZNF608!0.22!0.66!ZNF608;;chr5:124082525..124082536,-!p10@ZNF608!0.22!0.66!ZNF608;;chr6:137815425..137815444,-!p2@OLIG3!0.22!0.66!OLIG3;;chr7:42276896..42276903,-!p9@GLI3!0.22!0.66!GLI3;;chr8:30890810..30890880,-!p1@PURG!0.22!0.66!PURG;;chr8:93115362..93115391,-!p9@RUNX1T1!0.22!0.66!RUNX1T1;;chr11:57103327..57103372,-!p1@SSRP1!0.21!69.60!SSRP1;;chrX:47509928..47509990,-!p1@ELK1!0.21!44.69!ELK1;;chr18:51750839..51750885,-!p2@MBD2!0.21!13.77!MBD2;;chr19:1863591..1863611,-!p2@KLF16!0.21!13.44!KLF16;;chr19:52531600..52531685,-!p1@ZNF614!0.21!12.89!ZNF614;;chr4:10459009..10459061,-!p1@ZNF518B!0.21!12.35!ZNF518B;;chr19:52408257..52408278,-!p1@ZNF649!0.21!8.85!ZNF649;;chr19:52643169..52643199,-!p1@ZNF616!0.21!7.87!ZNF616;;chr7:86781916..86781963,+!p2@DMTF1!0.21!5.68!DMTF1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.21!3.82!ZSCAN23;;chr6:109804367..109804402,-!p2@ZBTB24!0.21!3.50!ZBTB24;;chr5:76383133..76383186,-!p2@ZBED3!0.21!2.19!ZBED3;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.21!2.19!ZNF117;;chr1:8483821..8483845,-!p11@RERE!0.21!2.19!RERE;;chr9:128509635..128509658,+!p2@PBX3!0.21!1.97!PBX3;;chr13:46543725..46543747,-!p2@ZC3H13!0.21!1.97!ZC3H13;;chr19:58666441..58666478,-!p2@ZNF329!0.21!1.75!ZNF329;;chr7:148823485..148823510,+!p4@ZNF398!0.21!1.53!ZNF398;;chr18:3449586..3449617,+!p8@TGIF1!0.21!1.53!TGIF1;;chrX:119384566..119384585,+!p2@ZBTB33!0.21!1.53!ZBTB33;;chrX:152599579..152599595,+!p2@ZNF275!0.21!1.31!ZNF275;;chr2:176033027..176033050,-!p3@ATF2!0.21!1.20!ATF2;;chr9:110251836..110251887,-!p4@KLF4!0.21!1.09!KLF4;;chr19:20011731..20011743,+!p3@ZNF93!0.21!1.09!ZNF93;;chr18:45457909..45457939,-!p8@SMAD2!0.21!0.98!SMAD2;;chr19:20844346..20844351,-!p2@ZNF626!0.21!0.98!ZNF626;;chr19:52839490..52839508,+!p2@ZNF610!0.21!0.98!ZNF610;;chr7:148844498..148844507,+!p6@ZNF398!0.21!0.87!ZNF398;;chr12:52431016..52431071,+!p4@NR4A1!0.21!0.87!NR4A1;;chr9:86595113..86595141,-!p1@HNRNPK!0.20!344.08!HNRPK;;chr1:93811438..93811548,+!p1@DR1!0.20!75.72!DR1;;chr15:42783305..42783348,-!p1@ZFP106!0.20!22.29!ZFP106;;chr6:7107939..7107993,+!p1@RREB1!0.20!16.28!RREB1;;
 
|fonse_cell_line=FF:0101120
 
|fonse_cell_line=FF:0101120
 
|fonse_cell_line_closure=FF:0101120
 
|fonse_cell_line_closure=FF:0101120
Line 66: Line 39:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
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|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100306
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:10790-110H7
 +
|is_a=EFO:0002091;;FF:0000210;;FF:0100306
 +
|is_obsolete=
 +
|library_id=CNhs11878
 +
|library_id_phase_based=2:CNhs11878
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10790
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10790
 +
|name=teratocarcinoma cell line:NCC-IT-A3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs11878,LSID830,release010,COMPLETED
 +
|profile_rnaseq=
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|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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 +
|rna_box=110
 +
|rna_catalog_number=
 +
|rna_concentration=1.96047
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=2.14
 +
|rna_od260/280=2.07
 +
|rna_position=H7
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=110H7
 +
|rna_weight_ug=147.03525
 +
|sample_age=24
 +
|sample_category=cell lines
 +
|sample_cell_catalog=jcrb1005
 +
|sample_cell_line=NCC-IT-A3
 +
|sample_cell_lot=
 +
|sample_cell_type=germ cell
 +
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 +
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=teratocarcinoma
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=J
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.80562312203369e-294!GO:0043226;organelle;2.50028369730795e-251!GO:0043229;intracellular organelle;7.46017490660452e-251!GO:0043231;intracellular membrane-bound organelle;1.89472980349739e-249!GO:0043227;membrane-bound organelle;3.26671420092928e-249!GO:0005737;cytoplasm;1.17380845927772e-172!GO:0044422;organelle part;6.91367745050602e-170!GO:0044446;intracellular organelle part;9.99083567576835e-169!GO:0005634;nucleus;1.11220937065329e-129!GO:0044237;cellular metabolic process;3.65671370134318e-118!GO:0044238;primary metabolic process;1.44339692896543e-116!GO:0044444;cytoplasmic part;4.67482855345602e-114!GO:0032991;macromolecular complex;4.8806377570815e-113!GO:0043170;macromolecule metabolic process;3.60819872941909e-111!GO:0030529;ribonucleoprotein complex;7.02991043958669e-104!GO:0044428;nuclear part;3.71388567674308e-96!GO:0003723;RNA binding;4.27442418907347e-94!GO:0043233;organelle lumen;6.57938982171459e-92!GO:0031974;membrane-enclosed lumen;6.57938982171459e-92!GO:0005739;mitochondrion;4.64688947653794e-77!GO:0043283;biopolymer metabolic process;1.49666704690924e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.98459002459704e-72!GO:0006396;RNA processing;3.79497157338379e-70!GO:0010467;gene expression;6.69538890364004e-68!GO:0005515;protein binding;4.07374507461369e-64!GO:0031981;nuclear lumen;1.34724346802343e-58!GO:0016043;cellular component organization and biogenesis;2.69218412989711e-57!GO:0005840;ribosome;2.94720828927202e-56!GO:0043234;protein complex;3.61138888432757e-54!GO:0006412;translation;1.16771360078602e-53!GO:0044429;mitochondrial part;2.58658739186834e-53!GO:0003676;nucleic acid binding;2.21129562198631e-51!GO:0016071;mRNA metabolic process;1.9067627231643e-50!GO:0043228;non-membrane-bound organelle;6.78200893371774e-48!GO:0043232;intracellular non-membrane-bound organelle;6.78200893371774e-48!GO:0003735;structural constituent of ribosome;1.63142922833931e-47!GO:0008380;RNA splicing;2.0271915335588e-47!GO:0031967;organelle envelope;8.24578891724725e-47!GO:0031975;envelope;1.84888176652542e-46!GO:0033036;macromolecule localization;3.2165108640606e-46!GO:0006996;organelle organization and biogenesis;1.57523902772973e-45!GO:0015031;protein transport;3.74046403895132e-45!GO:0031090;organelle membrane;4.89186114099806e-45!GO:0006259;DNA metabolic process;1.62340158931183e-44!GO:0019538;protein metabolic process;2.72048347500626e-44!GO:0006397;mRNA processing;9.67466745420312e-43!GO:0044249;cellular biosynthetic process;2.34633680918269e-42!GO:0009058;biosynthetic process;3.22677291361155e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.43517149793651e-42!GO:0033279;ribosomal subunit;9.72421053946789e-42!GO:0008104;protein localization;1.10467271647603e-40!GO:0045184;establishment of protein localization;2.75007702073677e-40!GO:0016070;RNA metabolic process;4.08289634398394e-39!GO:0044260;cellular macromolecule metabolic process;4.17387013389197e-39!GO:0065003;macromolecular complex assembly;4.44674243212049e-39!GO:0009059;macromolecule biosynthetic process;4.87593252844461e-39!GO:0044267;cellular protein metabolic process;5.4830260772435e-39!GO:0046907;intracellular transport;2.76097020816569e-37!GO:0005654;nucleoplasm;1.36390918216427e-34!GO:0022607;cellular component assembly;2.12855366695058e-34!GO:0005681;spliceosome;7.47775219996903e-34!GO:0000166;nucleotide binding;1.16155239831086e-32!GO:0007049;cell cycle;1.64400415309064e-32!GO:0005740;mitochondrial envelope;3.9418393549828e-32!GO:0019866;organelle inner membrane;8.23655453775022e-32!GO:0006886;intracellular protein transport;2.42843978425867e-30!GO:0031966;mitochondrial membrane;8.49299021701926e-30!GO:0005829;cytosol;1.96735258991876e-29!GO:0005743;mitochondrial inner membrane;3.20837873581654e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.09994709337812e-29!GO:0044451;nucleoplasm part;1.04176447620127e-27!GO:0006974;response to DNA damage stimulus;2.33669922948218e-27!GO:0005694;chromosome;1.2167763484916e-26!GO:0005730;nucleolus;2.0062141580164e-26!GO:0051649;establishment of cellular localization;1.44071444760672e-25!GO:0031980;mitochondrial lumen;2.35385265134083e-25!GO:0005759;mitochondrial matrix;2.35385265134083e-25!GO:0000278;mitotic cell cycle;3.79659169556599e-25!GO:0051641;cellular localization;1.03471255637083e-24!GO:0022402;cell cycle process;2.12614748654227e-24!GO:0006119;oxidative phosphorylation;5.48942760790623e-24!GO:0044427;chromosomal part;1.55830293335719e-23!GO:0006281;DNA repair;2.12141804681173e-23!GO:0016462;pyrophosphatase activity;3.52491255528062e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.13091622275354e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.51573840848139e-23!GO:0016874;ligase activity;6.64469484773406e-23!GO:0044455;mitochondrial membrane part;1.33254601023992e-22!GO:0017111;nucleoside-triphosphatase activity;2.64771521138684e-22!GO:0044445;cytosolic part;3.00326645628789e-22!GO:0032553;ribonucleotide binding;4.26098501006242e-22!GO:0032555;purine ribonucleotide binding;4.26098501006242e-22!GO:0051276;chromosome organization and biogenesis;7.38645910133346e-22!GO:0022618;protein-RNA complex assembly;7.80799793287989e-22!GO:0015935;small ribosomal subunit;1.66233976015474e-21!GO:0015934;large ribosomal subunit;2.35326243087196e-21!GO:0000087;M phase of mitotic cell cycle;5.75013011962534e-21!GO:0017076;purine nucleotide binding;6.7069382151279e-21!GO:0022403;cell cycle phase;9.75407499679319e-21!GO:0006512;ubiquitin cycle;1.28441896194985e-20!GO:0007067;mitosis;1.44937249748786e-20!GO:0042254;ribosome biogenesis and assembly;4.58842482706955e-20!GO:0044265;cellular macromolecule catabolic process;9.13152473415859e-20!GO:0051301;cell division;1.64472904574269e-19!GO:0006457;protein folding;2.9536599169849e-19!GO:0005524;ATP binding;3.62672089530083e-19!GO:0006260;DNA replication;6.13962865606717e-19!GO:0032559;adenyl ribonucleotide binding;1.37326759380329e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.3778020150309e-18!GO:0005746;mitochondrial respiratory chain;1.01483738239237e-17!GO:0000279;M phase;1.0554963105787e-17!GO:0008135;translation factor activity, nucleic acid binding;1.1835063300419e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54336447482731e-17!GO:0005761;mitochondrial ribosome;1.65023361756262e-17!GO:0000313;organellar ribosome;1.65023361756262e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.1259145769692e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.49061096787017e-17!GO:0019941;modification-dependent protein catabolic process;2.85850374920147e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.85850374920147e-17!GO:0030554;adenyl nucleotide binding;3.17534415549701e-17!GO:0044257;cellular protein catabolic process;5.05445400692718e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;7.0939857711115e-17!GO:0000375;RNA splicing, via transesterification reactions;7.0939857711115e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.0939857711115e-17!GO:0009719;response to endogenous stimulus;7.99441573962939e-17!GO:0044453;nuclear membrane part;8.34007829221228e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.0475379070913e-16!GO:0003954;NADH dehydrogenase activity;1.0475379070913e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0475379070913e-16!GO:0006323;DNA packaging;1.08302038542513e-16!GO:0031965;nuclear membrane;2.02417417859938e-16!GO:0043285;biopolymer catabolic process;2.33264311672956e-16!GO:0012505;endomembrane system;3.06323411668689e-16!GO:0006605;protein targeting;4.44637848741011e-16!GO:0009057;macromolecule catabolic process;7.34598462326424e-16!GO:0006403;RNA localization;9.62942038730194e-16!GO:0006399;tRNA metabolic process;1.20486891609366e-15!GO:0044248;cellular catabolic process;1.49480299875829e-15!GO:0005643;nuclear pore;1.50531136423738e-15!GO:0050657;nucleic acid transport;2.10378842716488e-15!GO:0051236;establishment of RNA localization;2.10378842716488e-15!GO:0050658;RNA transport;2.10378842716488e-15!GO:0005635;nuclear envelope;2.68171717106331e-15!GO:0051186;cofactor metabolic process;2.96860206870046e-15!GO:0042775;organelle ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0042773;ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0004386;helicase activity;4.2140072922406e-15!GO:0008134;transcription factor binding;5.89184122546782e-15!GO:0030964;NADH dehydrogenase complex (quinone);9.29134741172787e-15!GO:0045271;respiratory chain complex I;9.29134741172787e-15!GO:0005747;mitochondrial respiratory chain complex I;9.29134741172787e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33678810093448e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.50393874792854e-14!GO:0048770;pigment granule;2.26941619084677e-14!GO:0042470;melanosome;2.26941619084677e-14!GO:0016887;ATPase activity;2.39474118206367e-14!GO:0043412;biopolymer modification;2.67633871237468e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70490314997498e-14!GO:0042623;ATPase activity, coupled;2.9759049079413e-14!GO:0006364;rRNA processing;3.85108087443967e-14!GO:0065002;intracellular protein transport across a membrane;5.04186990330742e-14!GO:0006413;translational initiation;7.507755717454e-14!GO:0016604;nuclear body;9.02051793771494e-14!GO:0016072;rRNA metabolic process;1.40333636610064e-13!GO:0051028;mRNA transport;1.60473548498564e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.08532493342431e-13!GO:0003743;translation initiation factor activity;2.16407661563102e-13!GO:0030163;protein catabolic process;2.1886930491561e-13!GO:0051082;unfolded protein binding;2.23937842068222e-13!GO:0006913;nucleocytoplasmic transport;2.93839136837338e-13!GO:0065004;protein-DNA complex assembly;3.33472042682074e-13!GO:0000785;chromatin;3.43073582276319e-13!GO:0008026;ATP-dependent helicase activity;3.51324224040898e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.61671591069545e-13!GO:0006732;coenzyme metabolic process;6.44180109551079e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.32422319026849e-13!GO:0051169;nuclear transport;9.79807360440278e-13!GO:0015630;microtubule cytoskeleton;1.35732024749931e-12!GO:0006446;regulation of translational initiation;1.53469959957534e-12!GO:0046930;pore complex;4.43689764364178e-12!GO:0008565;protein transporter activity;7.74363432801555e-12!GO:0006464;protein modification process;1.04859104991639e-11!GO:0016607;nuclear speck;1.06325947491885e-11!GO:0005794;Golgi apparatus;1.08286207480204e-11!GO:0048193;Golgi vesicle transport;1.22802798688924e-11!GO:0009259;ribonucleotide metabolic process;1.8450383772852e-11!GO:0006163;purine nucleotide metabolic process;2.52715424174331e-11!GO:0006333;chromatin assembly or disassembly;5.02088517620048e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.6922428208304e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.73873297285391e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.73873297285391e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.73873297285391e-11!GO:0000074;regulation of progression through cell cycle;1.01057504522095e-10!GO:0051726;regulation of cell cycle;1.07738348502937e-10!GO:0006261;DNA-dependent DNA replication;1.33509679302632e-10!GO:0043687;post-translational protein modification;1.34064628831551e-10!GO:0006164;purine nucleotide biosynthetic process;1.7612307455403e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.7630359365541e-10!GO:0043038;amino acid activation;2.14307675688839e-10!GO:0006418;tRNA aminoacylation for protein translation;2.14307675688839e-10!GO:0043039;tRNA aminoacylation;2.14307675688839e-10!GO:0009150;purine ribonucleotide metabolic process;2.6415242947821e-10!GO:0017038;protein import;2.72327417789615e-10!GO:0009260;ribonucleotide biosynthetic process;3.71888051612471e-10!GO:0006461;protein complex assembly;5.55190713797842e-10!GO:0000775;chromosome, pericentric region;5.65165629917896e-10!GO:0019222;regulation of metabolic process;6.79185380178898e-10!GO:0050794;regulation of cellular process;7.05929546171729e-10!GO:0016740;transferase activity;9.24744477367379e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.44033391711473e-10!GO:0008639;small protein conjugating enzyme activity;1.35264059434762e-09!GO:0043566;structure-specific DNA binding;1.56793164823857e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.80024375722146e-09!GO:0005783;endoplasmic reticulum;2.00397459144202e-09!GO:0009055;electron carrier activity;2.04660884362245e-09!GO:0016779;nucleotidyltransferase activity;2.08719452513558e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.15228658854845e-09!GO:0004842;ubiquitin-protein ligase activity;3.23465544300936e-09!GO:0019787;small conjugating protein ligase activity;3.34876521193213e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.36157248609331e-09!GO:0016568;chromatin modification;3.61621105703736e-09!GO:0003697;single-stranded DNA binding;4.05031238278471e-09!GO:0003712;transcription cofactor activity;6.00648285586174e-09!GO:0006366;transcription from RNA polymerase II promoter;6.11880833691551e-09!GO:0031497;chromatin assembly;9.71158523385559e-09!GO:0006334;nucleosome assembly;1.04677589058864e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.05821138761367e-08!GO:0009141;nucleoside triphosphate metabolic process;1.24725147960927e-08!GO:0008094;DNA-dependent ATPase activity;1.27809291014986e-08!GO:0016192;vesicle-mediated transport;1.41310983179062e-08!GO:0044432;endoplasmic reticulum part;1.50908894434818e-08!GO:0003899;DNA-directed RNA polymerase activity;1.92946095902259e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0015986;ATP synthesis coupled proton transport;2.75224872743801e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.75224872743801e-08!GO:0051188;cofactor biosynthetic process;3.0859657232228e-08!GO:0009060;aerobic respiration;3.39565925116571e-08!GO:0043623;cellular protein complex assembly;4.34911926815278e-08!GO:0009056;catabolic process;4.68082907375602e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.34468205170256e-08!GO:0006350;transcription;5.58676044812595e-08!GO:0016881;acid-amino acid ligase activity;6.04548142953524e-08!GO:0005819;spindle;6.89254259882488e-08!GO:0045333;cellular respiration;9.30181242437536e-08!GO:0005657;replication fork;1.02948328349279e-07!GO:0031323;regulation of cellular metabolic process;1.0526442684896e-07!GO:0000245;spliceosome assembly;1.15817329240587e-07!GO:0007051;spindle organization and biogenesis;1.49010594724221e-07!GO:0007005;mitochondrion organization and biogenesis;1.63901355626699e-07!GO:0005793;ER-Golgi intermediate compartment;1.99008804530148e-07!GO:0003724;RNA helicase activity;2.01178831474208e-07!GO:0006752;group transfer coenzyme metabolic process;2.29739993541689e-07!GO:0046034;ATP metabolic process;2.5399082992042e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74964974198642e-07!GO:0005813;centrosome;2.76730861007717e-07!GO:0009117;nucleotide metabolic process;4.32926962022018e-07!GO:0006754;ATP biosynthetic process;4.37668803228219e-07!GO:0006753;nucleoside phosphate metabolic process;4.37668803228219e-07!GO:0051329;interphase of mitotic cell cycle;5.38258173152817e-07!GO:0045259;proton-transporting ATP synthase complex;5.38957281639935e-07!GO:0006099;tricarboxylic acid cycle;5.83666639162522e-07!GO:0046356;acetyl-CoA catabolic process;5.83666639162522e-07!GO:0009108;coenzyme biosynthetic process;5.8686452161998e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.51394874756297e-07!GO:0051170;nuclear import;7.13115236389666e-07!GO:0006084;acetyl-CoA metabolic process;7.84482982028658e-07!GO:0019829;cation-transporting ATPase activity;9.46462515884538e-07!GO:0005815;microtubule organizing center;9.9753551473276e-07!GO:0048475;coated membrane;1.00228019846117e-06!GO:0030117;membrane coat;1.00228019846117e-06!GO:0010468;regulation of gene expression;1.01121856640735e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.01487923372305e-06!GO:0044452;nucleolar part;1.04522411523782e-06!GO:0008033;tRNA processing;1.10292950882196e-06!GO:0000075;cell cycle checkpoint;1.31860360305502e-06!GO:0032446;protein modification by small protein conjugation;1.46233029626514e-06!GO:0005667;transcription factor complex;1.48952620258864e-06!GO:0051325;interphase;1.63850979888528e-06!GO:0032774;RNA biosynthetic process;1.64993409842321e-06!GO:0051168;nuclear export;1.77106683189782e-06!GO:0006606;protein import into nucleus;1.9004093560524e-06!GO:0006351;transcription, DNA-dependent;2.23401659624211e-06!GO:0016853;isomerase activity;2.30157364929306e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.505853617571e-06!GO:0005762;mitochondrial large ribosomal subunit;2.95483663194305e-06!GO:0000315;organellar large ribosomal subunit;2.95483663194305e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.1677549789479e-06!GO:0016567;protein ubiquitination;3.17953580841563e-06!GO:0050789;regulation of biological process;3.2554513939018e-06!GO:0008168;methyltransferase activity;3.31117653894464e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.39845030037854e-06!GO:0030120;vesicle coat;3.8462269079665e-06!GO:0030662;coated vesicle membrane;3.8462269079665e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.03895277001037e-06!GO:0009109;coenzyme catabolic process;4.23957184344638e-06!GO:0000151;ubiquitin ligase complex;4.48825322324108e-06!GO:0051246;regulation of protein metabolic process;4.65158111268818e-06!GO:0005789;endoplasmic reticulum membrane;5.02827432542029e-06!GO:0003690;double-stranded DNA binding;5.74561466555501e-06!GO:0005768;endosome;5.88757120543657e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.03455875953901e-06!GO:0012501;programmed cell death;7.35844673605163e-06!GO:0003924;GTPase activity;7.7522854153474e-06!GO:0008186;RNA-dependent ATPase activity;7.99323400571358e-06!GO:0006302;double-strand break repair;8.253881710438e-06!GO:0005874;microtubule;9.0949933670778e-06!GO:0000776;kinetochore;9.2639249736815e-06!GO:0006915;apoptosis;9.92988578459622e-06!GO:0006793;phosphorus metabolic process;1.0211666788074e-05!GO:0006796;phosphate metabolic process;1.0211666788074e-05!GO:0007010;cytoskeleton organization and biogenesis;1.11890920301716e-05!GO:0000314;organellar small ribosomal subunit;1.35106488334498e-05!GO:0005763;mitochondrial small ribosomal subunit;1.35106488334498e-05!GO:0005525;GTP binding;1.48406080488516e-05!GO:0051187;cofactor catabolic process;1.62417269326299e-05!GO:0003677;DNA binding;1.65576363696173e-05!GO:0006613;cotranslational protein targeting to membrane;1.7188500079385e-05!GO:0044431;Golgi apparatus part;1.93149136080384e-05!GO:0051427;hormone receptor binding;2.26915296876589e-05!GO:0000059;protein import into nucleus, docking;2.41356150414582e-05!GO:0004004;ATP-dependent RNA helicase activity;2.52904009292527e-05!GO:0016363;nuclear matrix;2.70278280525632e-05!GO:0008654;phospholipid biosynthetic process;2.76060938557746e-05!GO:0006383;transcription from RNA polymerase III promoter;2.94779419026054e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.53695552115644e-05!GO:0003678;DNA helicase activity;3.58149263515593e-05!GO:0007017;microtubule-based process;3.72073244783742e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.07671306936695e-05!GO:0031988;membrane-bound vesicle;4.23622191799814e-05!GO:0051052;regulation of DNA metabolic process;4.26853877133076e-05!GO:0003682;chromatin binding;4.46739302195224e-05!GO:0007059;chromosome segregation;4.62230965479191e-05!GO:0016310;phosphorylation;4.71072721244565e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.71913518034108e-05!GO:0003729;mRNA binding;5.05405327001998e-05!GO:0035257;nuclear hormone receptor binding;5.09102239440165e-05!GO:0031252;leading edge;5.23962716887487e-05!GO:0016859;cis-trans isomerase activity;5.61349445238235e-05!GO:0005798;Golgi-associated vesicle;6.19402133514794e-05!GO:0005770;late endosome;6.77982739823226e-05!GO:0030880;RNA polymerase complex;6.89214972278353e-05!GO:0045449;regulation of transcription;8.59850908025712e-05!GO:0006402;mRNA catabolic process;9.17037424002842e-05!GO:0016251;general RNA polymerase II transcription factor activity;9.17174916837716e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.72713060921846e-05!GO:0044440;endosomal part;9.80052640082748e-05!GO:0010008;endosome membrane;9.80052640082748e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.8357582376221e-05!GO:0006352;transcription initiation;0.000101846968570029!GO:0006401;RNA catabolic process;0.000104940406023255!GO:0032561;guanyl ribonucleotide binding;0.000113604391353681!GO:0019001;guanyl nucleotide binding;0.000113604391353681!GO:0003713;transcription coactivator activity;0.000113786348302397!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000114340236287314!GO:0043021;ribonucleoprotein binding;0.00011727076265668!GO:0008219;cell death;0.000117441043880518!GO:0016265;death;0.000117441043880518!GO:0006310;DNA recombination;0.000123274770105394!GO:0031982;vesicle;0.000127984346187076!GO:0006626;protein targeting to mitochondrion;0.000138569784264997!GO:0007093;mitotic cell cycle checkpoint;0.00013993615187471!GO:0000786;nucleosome;0.000142122788767658!GO:0043681;protein import into mitochondrion;0.000144431910398226!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000145597372693256!GO:0031410;cytoplasmic vesicle;0.000160914539377198!GO:0015980;energy derivation by oxidation of organic compounds;0.000164477892020049!GO:0032508;DNA duplex unwinding;0.000166770148274354!GO:0032392;DNA geometric change;0.000166770148274354!GO:0007088;regulation of mitosis;0.000168359988272494!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000169642653153601!GO:0000428;DNA-directed RNA polymerase complex;0.000169642653153601!GO:0006839;mitochondrial transport;0.00018225825241771!GO:0006612;protein targeting to membrane;0.000185535262328909!GO:0031324;negative regulation of cellular metabolic process;0.000207648679485705!GO:0006520;amino acid metabolic process;0.000214190152023436!GO:0009165;nucleotide biosynthetic process;0.000224299218907705!GO:0007052;mitotic spindle organization and biogenesis;0.000233143870825032!GO:0006355;regulation of transcription, DNA-dependent;0.000239496178891546!GO:0000049;tRNA binding;0.000250694284289292!GO:0005839;proteasome core complex (sensu Eukaryota);0.00025985455967384!GO:0015631;tubulin binding;0.000288933471754683!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000291925079430908!GO:0046474;glycerophospholipid biosynthetic process;0.000291993345125825!GO:0045454;cell redox homeostasis;0.000307072719675622!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000310312111743508!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000324014839871237!GO:0003684;damaged DNA binding;0.000332876303586276!GO:0016787;hydrolase activity;0.000337559614537217!GO:0005769;early endosome;0.000339624524304724!GO:0045786;negative regulation of progression through cell cycle;0.000368684742906295!GO:0007006;mitochondrial membrane organization and biogenesis;0.000383064458247004!GO:0030027;lamellipodium;0.000392280403533583!GO:0048523;negative regulation of cellular process;0.000398378277812618!GO:0005684;U2-dependent spliceosome;0.000398378277812618!GO:0051087;chaperone binding;0.000398860566093216!GO:0000139;Golgi membrane;0.000422832570963354!GO:0006405;RNA export from nucleus;0.000423607978837257!GO:0008652;amino acid biosynthetic process;0.000458597061380522!GO:0031072;heat shock protein binding;0.0004732032804465!GO:0030867;rough endoplasmic reticulum membrane;0.000493363273840786!GO:0016126;sterol biosynthetic process;0.000505775323549091!GO:0006268;DNA unwinding during replication;0.000531223276981391!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055874448029657!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000583822562064369!GO:0009892;negative regulation of metabolic process;0.000694573753810434!GO:0004298;threonine endopeptidase activity;0.000746620375107826!GO:0006144;purine base metabolic process;0.000755853609144806!GO:0006338;chromatin remodeling;0.000787678050740955!GO:0051920;peroxiredoxin activity;0.000805816342046199!GO:0000725;recombinational repair;0.000810469052164349!GO:0000724;double-strand break repair via homologous recombination;0.000810469052164349!GO:0006414;translational elongation;0.000826571509701222!GO:0005885;Arp2/3 protein complex;0.000842843231468045!GO:0008250;oligosaccharyl transferase complex;0.000896806448364041!GO:0006275;regulation of DNA replication;0.000944225132863707!GO:0030521;androgen receptor signaling pathway;0.000958678117632381!GO:0005758;mitochondrial intermembrane space;0.00101140138823095!GO:0003714;transcription corepressor activity;0.00101140138823095!GO:0016564;transcription repressor activity;0.00101984544806841!GO:0009112;nucleobase metabolic process;0.00104353132304103!GO:0006541;glutamine metabolic process;0.00106567202706669!GO:0005637;nuclear inner membrane;0.00106856756900371!GO:0008270;zinc ion binding;0.00107233807389578!GO:0031970;organelle envelope lumen;0.00108460978526787!GO:0043069;negative regulation of programmed cell death;0.00111749561550059!GO:0004527;exonuclease activity;0.00112787173156769!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00112787173156769!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00112787173156769!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00112787173156769!GO:0016563;transcription activator activity;0.00115633589715237!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00121406264600719!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00121406264600719!GO:0046483;heterocycle metabolic process;0.0012725856229404!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00130606044029579!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00131670435729844!GO:0043066;negative regulation of apoptosis;0.0013190262034446!GO:0032259;methylation;0.00141497311168021!GO:0005788;endoplasmic reticulum lumen;0.00143990365044515!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00145646885398779!GO:0006611;protein export from nucleus;0.00146567093220534!GO:0005876;spindle microtubule;0.00153447768585444!GO:0046489;phosphoinositide biosynthetic process;0.00154575435979928!GO:0048471;perinuclear region of cytoplasm;0.00160365717877969!GO:0005048;signal sequence binding;0.00162241645589691!GO:0006916;anti-apoptosis;0.00166028134856203!GO:0040029;regulation of gene expression, epigenetic;0.00172635325743653!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00179819701604459!GO:0005741;mitochondrial outer membrane;0.00181493229930939!GO:0004576;oligosaccharyl transferase activity;0.00181580135375126!GO:0030118;clathrin coat;0.0018377524995722!GO:0019783;small conjugating protein-specific protease activity;0.00185703107893305!GO:0008092;cytoskeletal protein binding;0.00187435286206343!GO:0003711;transcription elongation regulator activity;0.00196334631200237!GO:0031968;organelle outer membrane;0.00202497793350307!GO:0048500;signal recognition particle;0.00208422788328063!GO:0019899;enzyme binding;0.00219254509262237!GO:0000792;heterochromatin;0.00222651636097982!GO:0004518;nuclease activity;0.00223501735687259!GO:0019867;outer membrane;0.00227806269843269!GO:0005669;transcription factor TFIID complex;0.00228045038454653!GO:0035258;steroid hormone receptor binding;0.00230015362985044!GO:0006695;cholesterol biosynthetic process;0.00239333775083389!GO:0006284;base-excision repair;0.00251399049909167!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00266206029436719!GO:0043596;nuclear replication fork;0.00266562182846923!GO:0000339;RNA cap binding;0.00273196818412652!GO:0043414;biopolymer methylation;0.00281686712496831!GO:0004003;ATP-dependent DNA helicase activity;0.00294933193308939!GO:0006595;polyamine metabolic process;0.0030153384357648!GO:0042981;regulation of apoptosis;0.00302749357254987!GO:0000096;sulfur amino acid metabolic process;0.00306081725363313!GO:0008312;7S RNA binding;0.00316638177636598!GO:0004843;ubiquitin-specific protease activity;0.00316867987505402!GO:0046467;membrane lipid biosynthetic process;0.00320223117382631!GO:0051539;4 iron, 4 sulfur cluster binding;0.00326648403286763!GO:0043067;regulation of programmed cell death;0.00326760489556374!GO:0051252;regulation of RNA metabolic process;0.00340250375734643!GO:0006730;one-carbon compound metabolic process;0.00348596615996851!GO:0009451;RNA modification;0.00375346340449434!GO:0048487;beta-tubulin binding;0.00386102603193576!GO:0008180;signalosome;0.0040133393522295!GO:0006270;DNA replication initiation;0.00402674569566823!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402674569566823!GO:0016481;negative regulation of transcription;0.00403231324288973!GO:0000228;nuclear chromosome;0.00409818816852308!GO:0000152;nuclear ubiquitin ligase complex;0.00424059438655509!GO:0042393;histone binding;0.00429825664179461!GO:0045045;secretory pathway;0.00452636773673382!GO:0007264;small GTPase mediated signal transduction;0.0045414993841563!GO:0051053;negative regulation of DNA metabolic process;0.00455690743088871!GO:0006519;amino acid and derivative metabolic process;0.00494247912300619!GO:0004221;ubiquitin thiolesterase activity;0.00505691695739429!GO:0033116;ER-Golgi intermediate compartment membrane;0.00544800493580197!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00547115952964494!GO:0045047;protein targeting to ER;0.00547115952964494!GO:0006007;glucose catabolic process;0.00549367963618637!GO:0030658;transport vesicle membrane;0.00563747228190073!GO:0048519;negative regulation of biological process;0.00567707176276251!GO:0007021;tubulin folding;0.00570769904774001!GO:0032200;telomere organization and biogenesis;0.00586796266516329!GO:0000723;telomere maintenance;0.00586796266516329!GO:0009116;nucleoside metabolic process;0.00594850314485303!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.006020045597428!GO:0042158;lipoprotein biosynthetic process;0.00625120399740559!GO:0006650;glycerophospholipid metabolic process;0.00629452825034155!GO:0051540;metal cluster binding;0.0065464867301588!GO:0051536;iron-sulfur cluster binding;0.0065464867301588!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00665460452183616!GO:0016272;prefoldin complex;0.00669054222125441!GO:0000082;G1/S transition of mitotic cell cycle;0.00682852239992566!GO:0030119;AP-type membrane coat adaptor complex;0.00683960302057968!GO:0018196;peptidyl-asparagine modification;0.00683960302057968!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00683960302057968!GO:0005791;rough endoplasmic reticulum;0.0071321988827927!GO:0030663;COPI coated vesicle membrane;0.00724268548463489!GO:0030126;COPI vesicle coat;0.00724268548463489!GO:0003746;translation elongation factor activity;0.00731531492193928!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00746221244773173!GO:0009124;nucleoside monophosphate biosynthetic process;0.00751609799664413!GO:0009123;nucleoside monophosphate metabolic process;0.00751609799664413!GO:0031570;DNA integrity checkpoint;0.00751609799664413!GO:0006378;mRNA polyadenylation;0.00767838073889502!GO:0006497;protein amino acid lipidation;0.00788887752511745!GO:0005832;chaperonin-containing T-complex;0.0080743628243267!GO:0043624;cellular protein complex disassembly;0.00809364166585937!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00809658251423614!GO:0000922;spindle pole;0.00817207504262815!GO:0019752;carboxylic acid metabolic process;0.00835587472218897!GO:0043601;nuclear replisome;0.0084551153669028!GO:0030894;replisome;0.0084551153669028!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00846104518719692!GO:0008022;protein C-terminus binding;0.00861077574563912!GO:0000097;sulfur amino acid biosynthetic process;0.00861077574563912!GO:0031124;mRNA 3'-end processing;0.00861077574563912!GO:0005875;microtubule associated complex;0.00861258551126305!GO:0005905;coated pit;0.00867140364581004!GO:0030384;phosphoinositide metabolic process;0.00885372819803133!GO:0019843;rRNA binding;0.00908475585004174!GO:0000819;sister chromatid segregation;0.00916502470728685!GO:0030131;clathrin adaptor complex;0.00921532178331595!GO:0006082;organic acid metabolic process;0.00946034738511939!GO:0000070;mitotic sister chromatid segregation;0.00947519519053255!GO:0008234;cysteine-type peptidase activity;0.00947519519053255!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00949813503137908!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00961655845962217!GO:0009303;rRNA transcription;0.00980385679374328!GO:0030518;steroid hormone receptor signaling pathway;0.00980385679374328!GO:0046914;transition metal ion binding;0.0100014330293696!GO:0030132;clathrin coat of coated pit;0.0100281786332238!GO:0006091;generation of precursor metabolites and energy;0.0100435606564995!GO:0000178;exosome (RNase complex);0.0104095714801536!GO:0030660;Golgi-associated vesicle membrane;0.0105827720324019!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0106056658105015!GO:0004674;protein serine/threonine kinase activity;0.0107530842986837!GO:0030134;ER to Golgi transport vesicle;0.011001158063616!GO:0065007;biological regulation;0.0113866933092096!GO:0006891;intra-Golgi vesicle-mediated transport;0.0114559215084649!GO:0008139;nuclear localization sequence binding;0.0114867423133074!GO:0051789;response to protein stimulus;0.0115218290833902!GO:0006986;response to unfolded protein;0.0115218290833902!GO:0030133;transport vesicle;0.0116671950948564!GO:0006376;mRNA splice site selection;0.011847575699088!GO:0000389;nuclear mRNA 3'-splice site recognition;0.011847575699088!GO:0015992;proton transport;0.0119905940262169!GO:0030036;actin cytoskeleton organization and biogenesis;0.0120783119431783!GO:0016584;nucleosome positioning;0.012156548955097!GO:0001726;ruffle;0.0123135797587831!GO:0006220;pyrimidine nucleotide metabolic process;0.012319040509469!GO:0045947;negative regulation of translational initiation;0.012352193782571!GO:0006818;hydrogen transport;0.0124274057828807!GO:0000118;histone deacetylase complex;0.0129977792762544!GO:0008097;5S rRNA binding;0.0130436965451618!GO:0006506;GPI anchor biosynthetic process;0.0133538132679579!GO:0044262;cellular carbohydrate metabolic process;0.0134088581845167!GO:0016790;thiolester hydrolase activity;0.0138398361195979!GO:0009161;ribonucleoside monophosphate metabolic process;0.013890452985156!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.013890452985156!GO:0005663;DNA replication factor C complex;0.0140756080139528!GO:0006301;postreplication repair;0.0143006240478475!GO:0016491;oxidoreductase activity;0.0143206845661164!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0145398893538084!GO:0015002;heme-copper terminal oxidase activity;0.0145398893538084!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0145398893538084!GO:0004129;cytochrome-c oxidase activity;0.0145398893538084!GO:0005732;small nucleolar ribonucleoprotein complex;0.0145849514145904!GO:0044450;microtubule organizing center part;0.0146383180406006!GO:0031577;spindle checkpoint;0.0146584946962676!GO:0044454;nuclear chromosome part;0.0148988551535712!GO:0043022;ribosome binding;0.0153858866663945!GO:0043488;regulation of mRNA stability;0.0156067802451919!GO:0043487;regulation of RNA stability;0.0156067802451919!GO:0042770;DNA damage response, signal transduction;0.0157575653851506!GO:0008610;lipid biosynthetic process;0.0161378509756901!GO:0006790;sulfur metabolic process;0.0162260898370124!GO:0005862;muscle thin filament tropomyosin;0.0165295856303656!GO:0008320;protein transmembrane transporter activity;0.0170785535478075!GO:0006892;post-Golgi vesicle-mediated transport;0.0173251467446057!GO:0006505;GPI anchor metabolic process;0.0173720732952049!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0176379754394323!GO:0006406;mRNA export from nucleus;0.0176593584523171!GO:0032984;macromolecular complex disassembly;0.0179103165210199!GO:0006417;regulation of translation;0.0181777385676296!GO:0030659;cytoplasmic vesicle membrane;0.0181777385676296!GO:0031123;RNA 3'-end processing;0.0184367885646753!GO:0022884;macromolecule transmembrane transporter activity;0.0184367885646753!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0184367885646753!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0185530539720376!GO:0006740;NADPH regeneration;0.0190816317798841!GO:0006098;pentose-phosphate shunt;0.0190816317798841!GO:0006400;tRNA modification;0.0200352284335115!GO:0050681;androgen receptor binding;0.0205683600636815!GO:0009081;branched chain family amino acid metabolic process;0.0206215175876572!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0206215175876572!GO:0045039;protein import into mitochondrial inner membrane;0.0206215175876572!GO:0009066;aspartate family amino acid metabolic process;0.0206235301159681!GO:0000790;nuclear chromatin;0.0206981046806723!GO:0031901;early endosome membrane;0.0211981425772704!GO:0004532;exoribonuclease activity;0.0213272560364283!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0213272560364283!GO:0035267;NuA4 histone acetyltransferase complex;0.0215203105507292!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0216989287686894!GO:0016407;acetyltransferase activity;0.021919946737374!GO:0008156;negative regulation of DNA replication;0.0219635181887698!GO:0000209;protein polyubiquitination;0.0219864696812612!GO:0050662;coenzyme binding;0.0223369131594642!GO:0008017;microtubule binding;0.0226126132717963!GO:0030137;COPI-coated vesicle;0.0227302497599337!GO:0043241;protein complex disassembly;0.0232953372839035!GO:0000910;cytokinesis;0.0234203169427647!GO:0008276;protein methyltransferase activity;0.0234911472911732!GO:0030176;integral to endoplasmic reticulum membrane;0.023702101117872!GO:0009064;glutamine family amino acid metabolic process;0.0238102470525879!GO:0004448;isocitrate dehydrogenase activity;0.0239235388288419!GO:0009113;purine base biosynthetic process;0.0242665809885203!GO:0006607;NLS-bearing substrate import into nucleus;0.0247747295133686!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0259291913750508!GO:0030127;COPII vesicle coat;0.0259291913750508!GO:0012507;ER to Golgi transport vesicle membrane;0.0259291913750508!GO:0016044;membrane organization and biogenesis;0.0265216907507617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0265619248130609!GO:0015399;primary active transmembrane transporter activity;0.0265619248130609!GO:0000726;non-recombinational repair;0.0270692909093297!GO:0008287;protein serine/threonine phosphatase complex;0.0277255926408382!GO:0022890;inorganic cation transmembrane transporter activity;0.0277895837047403!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0284865508058184!GO:0009126;purine nucleoside monophosphate metabolic process;0.0284865508058184!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0032594;protein transport within lipid bilayer;0.0284865508058184!GO:0032907;transforming growth factor-beta3 production;0.0284865508058184!GO:0032596;protein transport into lipid raft;0.0284865508058184!GO:0032910;regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0032595;B cell receptor transport within lipid bilayer;0.0284865508058184!GO:0033606;chemokine receptor transport within lipid bilayer;0.0284865508058184!GO:0032600;chemokine receptor transport out of lipid raft;0.0284865508058184!GO:0032599;protein transport out of lipid raft;0.0284865508058184!GO:0032597;B cell receptor transport into lipid raft;0.0284865508058184!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0044433;cytoplasmic vesicle part;0.0285077619575219!GO:0000077;DNA damage checkpoint;0.028620943632938!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.028620943632938!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0290368291706857!GO:0045892;negative regulation of transcription, DNA-dependent;0.0291106664415741!GO:0043284;biopolymer biosynthetic process;0.0293283072733407!GO:0030496;midbody;0.0293441958285245!GO:0030125;clathrin vesicle coat;0.0294695036180689!GO:0030665;clathrin coated vesicle membrane;0.0294695036180689!GO:0031369;translation initiation factor binding;0.0298072045814807!GO:0016585;chromatin remodeling complex;0.0302343722766172!GO:0003702;RNA polymerase II transcription factor activity;0.0304809482381891!GO:0005773;vacuole;0.0305040928396753!GO:0003756;protein disulfide isomerase activity;0.0310382791899322!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0310382791899322!GO:0005652;nuclear lamina;0.0310670778957708!GO:0031902;late endosome membrane;0.0318244997955758!GO:0005784;translocon complex;0.03188522966157!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0328815760001225!GO:0022411;cellular component disassembly;0.0329701286878814!GO:0005844;polysome;0.0331999533029733!GO:0007004;telomere maintenance via telomerase;0.0331999533029733!GO:0012506;vesicle membrane;0.0331999533029733!GO:0045815;positive regulation of gene expression, epigenetic;0.033325057392994!GO:0030145;manganese ion binding;0.0336377577218629!GO:0043631;RNA polyadenylation;0.0336645526887335!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0345014063960937!GO:0010257;NADH dehydrogenase complex assembly;0.0345014063960937!GO:0033108;mitochondrial respiratory chain complex assembly;0.0345014063960937!GO:0051287;NAD binding;0.0345336204458606!GO:0006289;nucleotide-excision repair;0.0345346582515587!GO:0050811;GABA receptor binding;0.0347207018534611!GO:0008629;induction of apoptosis by intracellular signals;0.0347510986622206!GO:0031371;ubiquitin conjugating enzyme complex;0.0347673017713612!GO:0046966;thyroid hormone receptor binding;0.034792965743789!GO:0008536;Ran GTPase binding;0.0348646780014944!GO:0005680;anaphase-promoting complex;0.0348646780014944!GO:0006596;polyamine biosynthetic process;0.0348994332621404!GO:0004523;ribonuclease H activity;0.0353537172234551!GO:0004659;prenyltransferase activity;0.035387524707804!GO:0046365;monosaccharide catabolic process;0.0359830853707568!GO:0000781;chromosome, telomeric region;0.0374107781800338!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038187371932223!GO:0005938;cell cortex;0.0385226948074273!GO:0043433;negative regulation of transcription factor activity;0.0389361260866161!GO:0046112;nucleobase biosynthetic process;0.0392849744096258!GO:0009308;amine metabolic process;0.0397278419400628!GO:0042026;protein refolding;0.0397475868618397!GO:0008143;poly(A) binding;0.0397768337645996!GO:0004526;ribonuclease P activity;0.0397768337645996!GO:0042769;DNA damage response, detection of DNA damage;0.0397768337645996!GO:0043189;H4/H2A histone acetyltransferase complex;0.0398029865016675!GO:0030029;actin filament-based process;0.0399673627550036!GO:0030175;filopodium;0.0404562674951709!GO:0001522;pseudouridine synthesis;0.0406083450687863!GO:0006096;glycolysis;0.0406943171787038!GO:0033170;DNA-protein loading ATPase activity;0.0413175903241754!GO:0003689;DNA clamp loader activity;0.0413175903241754!GO:0008408;3'-5' exonuclease activity;0.0415870356709377!GO:0005666;DNA-directed RNA polymerase III complex;0.0415870356709377!GO:0043130;ubiquitin binding;0.0424629589065786!GO:0032182;small conjugating protein binding;0.0424629589065786!GO:0016018;cyclosporin A binding;0.0431814316944279!GO:0005869;dynactin complex;0.0446882306658558!GO:0003747;translation release factor activity;0.0455762380509549!GO:0008079;translation termination factor activity;0.0455762380509549!GO:0009067;aspartate family amino acid biosynthetic process;0.0456741037263001!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0464805174783456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0467275611148171!GO:0051320;S phase;0.0473271175951386!GO:0005996;monosaccharide metabolic process;0.0475293095968032!GO:0042791;5S class rRNA transcription;0.0478197906399677!GO:0000127;transcription factor TFIIIC complex;0.0478197906399677!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0478197906399677!GO:0030522;intracellular receptor-mediated signaling pathway;0.0479312846051103!GO:0006415;translational termination;0.0480501785168832!GO:0042585;germinal vesicle;0.0480501785168832!GO:0030911;TPR domain binding;0.0483728548431128!GO:0006189;'de novo' IMP biosynthetic process;0.0483728548431128!GO:0006188;IMP biosynthetic process;0.0483728548431128!GO:0046040;IMP metabolic process;0.0483728548431128!GO:0006733;oxidoreduction coenzyme metabolic process;0.0491383014476653!GO:0000119;mediator complex;0.0494286148583059
 +
|sample_id=10790
 +
|sample_note=
 +
|sample_sex=male
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=mediastinum
 +
|top_motifs=OCT4_SOX2{dimer}:2.99333611082;VSX1,2:2.5238250858;TOPORS:2.14328103778;GFI1:2.09320094424;ALX1:1.92769800526;SOX{8,9,10}:1.71864972627;E2F1..5:1.61661077017;NFY{A,B,C}:1.59000261184;POU2F1..3:1.48809492397;ZNF384:1.42617909446;ELK1,4_GABP{A,B1}:1.42060068984;RBPJ:1.39020037375;FOXM1:1.29892191703;PITX1..3:1.2807527424;TFDP1:1.21992071727;CDX1,2,4:1.21921706565;PBX1:1.21050105087;EVI1:1.13572665755;NRF1:1.10510042661;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.09690981743;PAX1,9:1.08017719377;SOX2:1.07110716173;ONECUT1,2:1.04469094877;FOXP1:1.01924982228;SOX17:1.01803294201;ZNF143:0.963631615018;STAT1,3:0.945775899973;IKZF2:0.923941921657;HOX{A4,D4}:0.884652815642;PAX8:0.878873321562;BREu{core}:0.856679509044;CUX2:0.832825892399;FOXQ1:0.823257058079;AIRE:0.807844594721;YY1:0.80504113555;CDC5L:0.729977320009;POU5F1:0.703395479282;LEF1_TCF7_TCF7L1,2:0.703075755045;FOXD3:0.693777626104;MYB:0.674236694521;KLF4:0.666966114182;PRRX1,2:0.644674433912;POU1F1:0.626163003704;T:0.586170423093;ZBTB16:0.562860517477;ZIC1..3:0.562709824954;PATZ1:0.561960620088;SP1:0.524080339509;FOX{I1,J2}:0.478776412999;GATA4:0.464859697312;ADNP_IRX_SIX_ZHX:0.437025988738;NANOG:0.436406481965;NKX2-3_NKX2-5:0.417421578191;POU6F1:0.35930328973;HIF1A:0.329628957191;NR5A1,2:0.301668654978;EN1,2:0.29623201897;FOXN1:0.284802687604;HSF1,2:0.268119422963;HOX{A5,B5}:0.266532893174;PAX2:0.261887434479;XCPE1{core}:0.25917126395;NKX6-1,2:0.248332653603;NKX2-1,4:0.219172215427;HOX{A6,A7,B6,B7}:0.209473724585;ARID5B:0.206657683929;ATF4:0.189531827273;STAT5{A,B}:0.172429946915;RORA:0.163488542441;TEF:0.157956043049;SNAI1..3:0.150212662192;CRX:0.133503769188;UFEwm:0.0929932543545;POU3F1..4:0.0624365352224;MZF1:0.0498737980522;GATA6:0.049315655038;FOXA2:0.0251078381063;ZFP161:0.0232571215077;IKZF1:0.0133127089162;HNF4A_NR2F1,2:0.00441302873405;HOXA9_MEIS1:-0.0606688622885;MYOD1:-0.0698506963512;MTF1:-0.0793751768355;ZEB1:-0.0958872820828;NFE2L2:-0.0967823274924;HAND1,2:-0.098293840317;NR1H4:-0.144386543366;HNF1A:-0.147108247606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.150827350735;NANOG{mouse}:-0.163302403921;ATF5_CREB3:-0.164731858637;LMO2:-0.16678784242;PAX3,7:-0.18985618715;ELF1,2,4:-0.190863349414;MAZ:-0.21320042344;FOXO1,3,4:-0.216396375074;PAX4:-0.218249819004;LHX3,4:-0.219992999308;MYFfamily:-0.256440596674;ZNF148:-0.266870640748;RFX1:-0.289705420646;bHLH_family:-0.296306725581;HIC1:-0.337023449425;SOX5:-0.3426565565;SREBF1,2:-0.349831739588;NKX3-1:-0.353263240835;ZBTB6:-0.354716015065;RXR{A,B,G}:-0.370624663212;ESRRA:-0.375981241378;DMAP1_NCOR{1,2}_SMARC:-0.384244757591;REST:-0.385151219321;PRDM1:-0.390414816217;MYBL2:-0.391858771783;GTF2I:-0.409929273275;AHR_ARNT_ARNT2:-0.436363556257;NFIX:-0.438165877364;FOXP3:-0.440863870943;CREB1:-0.441898368989;NHLH1,2:-0.45542886155;XBP1:-0.457228121031;TEAD1:-0.460238645199;JUN:-0.463174348851;TBX4,5:-0.465622560518;NFKB1_REL_RELA:-0.469455768735;RREB1:-0.484784250483;TFAP2B:-0.489362517136;TBP:-0.489895483767;AR:-0.491831461087;TGIF1:-0.492764818449;BPTF:-0.516251226721;MEF2{A,B,C,D}:-0.519500356528;GFI1B:-0.519674183527;GZF1:-0.532364127976;MTE{core}:-0.547485674926;EBF1:-0.547891259143;FOS_FOS{B,L1}_JUN{B,D}:-0.552906909267;PAX6:-0.567228506168;FOSL2:-0.571906983385;NKX2-2,8:-0.60853180253;ZNF423:-0.60861009349;PDX1:-0.612399053511;SPI1:-0.618517106896;RUNX1..3:-0.634434709856;BACH2:-0.645959929676;GCM1,2:-0.655268631797;TP53:-0.662177543394;DBP:-0.669492801051;RFX2..5_RFXANK_RFXAP:-0.676682357988;SPIB:-0.695323124254;NFE2:-0.696893222212;PAX5:-0.700216240811;ATF2:-0.713080812055;ZNF238:-0.731135003967;HMGA1,2:-0.73217371634;MED-1{core}:-0.733092972465;FOX{F1,F2,J1}:-0.748148931084;HLF:-0.757673033299;EGR1..3:-0.793098145078;FOXL1:-0.808838641139;CEBPA,B_DDIT3:-0.819184954838;ALX4:-0.834203004529;NFIL3:-0.843534319772;NKX3-2:-0.845990509175;SPZ1:-0.847195031529;NR3C1:-0.862046765836;TFAP4:-0.865539704624;IRF7:-0.925205992642;NFE2L1:-0.927775424188;TAL1_TCF{3,4,12}:-0.963302965813;TLX2:-0.969129003287;ETS1,2:-0.995192437437;HES1:-1.01937693148;EP300:-1.02555883349;HBP1_HMGB_SSRP1_UBTF:-1.08129462805;PPARG:-1.08767630749;TFCP2:-1.09398916036;FOX{D1,D2}:-1.18822774457;SRF:-1.18826626152;NR6A1:-1.19580766356;STAT2,4,6:-1.2075222586;GLI1..3:-1.20916036776;TFAP2{A,C}:-1.2210985539;IRF1,2:-1.23552401916;NFATC1..3:-1.25384600626;GTF2A1,2:-1.26297801085;TLX1..3_NFIC{dimer}:-1.28609062903;SMAD1..7,9:-1.36672200946;HMX1:-1.38948348146;MAFB:-1.52994490566;RXRA_VDR{dimer}:-1.90918803294;ESR1:-1.97842681198;ATF6:-1.98107848024
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10790-110H7;search_select_hide=table117:FF:10790-110H7
 
}}
 
}}

Latest revision as of 06:04, 3 June 2020

Name:teratocarcinoma cell line:NCC-IT-A3
Species:Human (Homo sapiens)
Library ID:CNhs11878
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemediastinum
dev stageNA
sexmale
age24
cell typegerm cell
cell lineNCC-IT-A3
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005042
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11878 CAGE DRX008019 DRR008891
Accession ID Hg19

Library idBAMCTSS
CNhs11878 DRZ000316 DRZ001701
Accession ID Hg38

Library idBAMCTSS
CNhs11878 DRZ011666 DRZ013051
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.325
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.603
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0.0858
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.0858
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0.0225
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0658
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0655
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.045
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.045
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.788
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.216
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0303
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.321
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11878

Jaspar motifP-value
MA0002.23.09182e-4
MA0003.10.0849
MA0004.10.967
MA0006.10.884
MA0007.10.977
MA0009.10.615
MA0014.10.787
MA0017.10.16
MA0018.20.883
MA0019.10.435
MA0024.12.57259e-6
MA0025.10.26
MA0027.10.735
MA0028.14.21713e-5
MA0029.10.661
MA0030.10.145
MA0031.10.163
MA0035.20.861
MA0038.11.95481e-4
MA0039.20.0294
MA0040.10.208
MA0041.10.149
MA0042.10.424
MA0043.10.767
MA0046.10.191
MA0047.20.00813
MA0048.10.222
MA0050.13.13132e-8
MA0051.13.99188e-7
MA0052.10.00117
MA0055.10.0805
MA0057.10.441
MA0058.10.807
MA0059.10.997
MA0060.12.15902e-15
MA0061.10.00667
MA0062.28.07042e-4
MA0065.20.924
MA0066.10.493
MA0067.10.341
MA0068.10.00634
MA0069.10.44
MA0070.10.568
MA0071.10.692
MA0072.10.598
MA0073.10.536
MA0074.10.167
MA0076.12.31886e-5
MA0077.10.117
MA0078.10.75
MA0079.20.532
MA0080.24.96116e-11
MA0081.10.085
MA0083.13.01388e-4
MA0084.10.0955
MA0087.10.697
MA0088.10.215
MA0090.10.114
MA0091.10.0918
MA0092.10.12
MA0093.10.958
MA0099.21.97587e-16
MA0100.10.347
MA0101.10.0751
MA0102.20.00105
MA0103.10.715
MA0104.20.471
MA0105.10.0188
MA0106.10.142
MA0107.10.00706
MA0108.20.608
MA0111.10.731
MA0112.22.79118e-4
MA0113.10.0808
MA0114.10.78
MA0115.10.0923
MA0116.10.173
MA0117.10.915
MA0119.10.0415
MA0122.10.973
MA0124.10.417
MA0125.10.396
MA0131.10.166
MA0135.10.0531
MA0136.12.7811e-7
MA0137.20.266
MA0138.20.0624
MA0139.10.628
MA0140.10.789
MA0141.10.756
MA0142.15.2373e-18
MA0143.18.14698e-6
MA0144.10.0395
MA0145.10.295
MA0146.10.494
MA0147.10.344
MA0148.10.0525
MA0149.10.981
MA0150.10.00203
MA0152.10.708
MA0153.10.13
MA0154.10.043
MA0155.10.422
MA0156.10.00706
MA0157.10.208
MA0159.10.384
MA0160.10.337
MA0162.10.449
MA0163.10.0459
MA0164.10.934
MA0258.10.171
MA0259.10.201



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11878

Novel motifP-value
10.46
100.631
1000.481
1010.955
1020.875
1030.0322
1040.592
1050.159
1060.00259
1070.19
1080.824
1090.264
110.384
1100.572
1110.648
1120.112
1130.0541
1140.184
1150.874
1160.893
1170.973
1180.73
1190.32
120.603
1200.596
1210.275
1220.687
1230.205
1240.548
1250.163
1260.463
1270.282
1280.216
1290.316
130.291
1300.121
1310.48
1320.732
1330.196
1340.41
1350.0143
1360.207
1370.478
1380.167
1390.0418
140.804
1400.609
1410.773
1420.817
1430.0535
1440.892
1450.302
1460.261
1470.879
1480.081
1490.0365
150.183
1500.586
1510.0839
1520.0349
1530.617
1540.908
1550.992
1560.274
1570.729
1580.376
1590.245
160.25
1600.212
1610.55
1620.862
1630.215
1640.322
1650.454
1660.729
1670.542
1680.21
1690.0124
170.196
180.168
190.163
20.12
200.656
210.819
220.107
230.0091
240.622
250.77
260.63
270.0869
280.715
290.956
30.518
300.331
310.605
320.0243
330.911
340.332
350.84
360.948
370.317
380.417
390.426
40.803
400.898
410.197
420.816
430.23
440.909
450.24
460.114
470.558
480.657
490.329
50.305
500.947
510.397
520.45
530.86
540.499
550.189
560.497
570.846
580.205
590.0676
60.475
600.0738
610.734
620.0999
630.208
640.583
650.0546
660.109
670.733
680.158
690.626
70.919
700.0192
710.146
720.424
730.0685
740.832
750.931
760.701
770.075
780.717
790.0227
80.278
800.0227
810.574
820.104
830.633
840.509
850.0212
860.587
870.519
880.42
890.0154
90.0419
900.72
910.513
920.032
930.384
940.281
950.399
960.197
970.761
980.927
990.986



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11878


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA