FF:11302-117B6: Difference between revisions

Latest revision as of 16:31, 3 June 2020

Name:	Gingival epithelial cells, donor2 (GEA14)
Species:	Human (Homo sapiens)
Library ID:	CNhs11896
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	38 years old adult
sex	female
age	38
cell type	epithelial cell
cell line	NA
company	N/A
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005050

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11896		CAGE		DRX008294		DRR009166

Accession ID Hg19

Library id		BAM		CTSS
CNhs11896		DRZ000591		DRZ001976

Accession ID Hg38

Library id		BAM		CTSS
CNhs11896		DRZ011941		DRZ013326

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005050

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10011.ACAGTG		sRNA-Seq		DRX037167		DRR041533

Accession ID Hg19

Library id		BAM		CTSS
SRhi10011.ACAGTG		DRZ007175

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0456
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.126
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.374
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0609
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.105
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.259
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.464
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.023
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.197
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.707
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.00183
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.189
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.26
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.26
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11896

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.773
MA0003.1	MA0003.1	0.744
MA0004.1	MA0004.1	0.107
MA0006.1	MA0006.1	0.0147
MA0007.1	MA0007.1	0.97
MA0009.1	MA0009.1	0.184
MA0014.1	MA0014.1	0.093
MA0017.1	MA0017.1	0.914
MA0018.2	MA0018.2	0.00755
MA0019.1	MA0019.1	0.307
MA0024.1	MA0024.1	0.0555
MA0025.1	MA0025.1	0.863
MA0027.1	MA0027.1	0.475
MA0028.1	MA0028.1	0.237
MA0029.1	MA0029.1	0.381
MA0030.1	MA0030.1	0.369
MA0031.1	MA0031.1	0.321
MA0035.2	MA0035.2	0.261
MA0038.1	MA0038.1	0.89
MA0039.2	MA0039.2	9.65792e-4
MA0040.1	MA0040.1	0.273
MA0041.1	MA0041.1	0.34
MA0042.1	MA0042.1	0.612
MA0043.1	MA0043.1	0.151
MA0046.1	MA0046.1	0.513
MA0047.2	MA0047.2	0.63
MA0048.1	MA0048.1	0.817
MA0050.1	MA0050.1	0.145
MA0051.1	MA0051.1	0.545
MA0052.1	MA0052.1	0.0261
MA0055.1	MA0055.1	0.00168
MA0057.1	MA0057.1	0.0853
MA0058.1	MA0058.1	0.0181
MA0059.1	MA0059.1	0.694
MA0060.1	MA0060.1	0.43
MA0061.1	MA0061.1	0.647
MA0062.2	MA0062.2	0.452
MA0065.2	MA0065.2	0.631
MA0066.1	MA0066.1	0.242
MA0067.1	MA0067.1	0.0256
MA0068.1	MA0068.1	0.0563
MA0069.1	MA0069.1	0.467
MA0070.1	MA0070.1	0.432
MA0071.1	MA0071.1	0.0228
MA0072.1	MA0072.1	0.311
MA0073.1	MA0073.1	0.913
MA0074.1	MA0074.1	0.307
MA0076.1	MA0076.1	0.837
MA0077.1	MA0077.1	0.178
MA0078.1	MA0078.1	0.769
MA0079.2	MA0079.2	0.25
MA0080.2	MA0080.2	0.022
MA0081.1	MA0081.1	0.21
MA0083.1	MA0083.1	0.294
MA0084.1	MA0084.1	0.183
MA0087.1	MA0087.1	0.863
MA0088.1	MA0088.1	0.836
MA0090.1	MA0090.1	1.13285e-6
MA0091.1	MA0091.1	0.348
MA0092.1	MA0092.1	0.599
MA0093.1	MA0093.1	0.0731
MA0099.2	MA0099.2	4.16096e-16
MA0100.1	MA0100.1	0.171
MA0101.1	MA0101.1	0.116
MA0102.2	MA0102.2	0.537
MA0103.1	MA0103.1	5.73818e-7
MA0104.2	MA0104.2	0.117
MA0105.1	MA0105.1	0.988
MA0106.1	MA0106.1	2.48529e-14
MA0107.1	MA0107.1	0.0426
MA0108.2	MA0108.2	0.678
MA0111.1	MA0111.1	0.876
MA0112.2	MA0112.2	0.522
MA0113.1	MA0113.1	0.874
MA0114.1	MA0114.1	0.808
MA0115.1	MA0115.1	0.662
MA0116.1	MA0116.1	0.625
MA0117.1	MA0117.1	0.851
MA0119.1	MA0119.1	0.196
MA0122.1	MA0122.1	0.724
MA0124.1	MA0124.1	0.507
MA0125.1	MA0125.1	0.0404
MA0131.1	MA0131.1	0.904
MA0135.1	MA0135.1	0.456
MA0136.1	MA0136.1	0.996
MA0137.2	MA0137.2	0.552
MA0138.2	MA0138.2	0.627
MA0139.1	MA0139.1	0.971
MA0140.1	MA0140.1	0.81
MA0141.1	MA0141.1	0.0616
MA0142.1	MA0142.1	0.257
MA0143.1	MA0143.1	0.355
MA0144.1	MA0144.1	0.72
MA0145.1	MA0145.1	0.0535
MA0146.1	MA0146.1	0.369
MA0147.1	MA0147.1	0.268
MA0148.1	MA0148.1	0.438
MA0149.1	MA0149.1	0.0218
MA0150.1	MA0150.1	0.122
MA0152.1	MA0152.1	0.86
MA0153.1	MA0153.1	0.815
MA0154.1	MA0154.1	0.441
MA0155.1	MA0155.1	0.485
MA0156.1	MA0156.1	0.672
MA0157.1	MA0157.1	0.422
MA0159.1	MA0159.1	0.953
MA0160.1	MA0160.1	0.651
MA0162.1	MA0162.1	0.113
MA0163.1	MA0163.1	0.632
MA0164.1	MA0164.1	0.961
MA0258.1	MA0258.1	0.581
MA0259.1	MA0259.1	0.206

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11896

Novel motif	Logo	P-value
1	1	0.963
10	10	0.332
100	100	0.555
101	101	0.189
102	102	0.45
103	103	0.13
104	104	0.866
105	105	0.136
106	106	0.151
107	107	0.0663
108	108	0.824
109	109	0.0131
11	11	0.249
110	110	0.484
111	111	0.361
112	112	0.156
113	113	0.25
114	114	0.346
115	115	0.534
116	116	0.745
117	117	0.288
118	118	0.871
119	119	0.361
12	12	0.891
120	120	0.102
121	121	0.292
122	122	0.54
123	123	0.792
124	124	0.0655
125	125	0.249
126	126	0.348
127	127	0.224
128	128	0.941
129	129	0.103
13	13	0.0415
130	130	0.718
131	131	0.489
132	132	0.34
133	133	0.0071
134	134	0.279
135	135	0.636
136	136	0.0307
137	137	0.117
138	138	0.923
139	139	0.367
14	14	0.838
140	140	0.678
141	141	0.806
142	142	0.708
143	143	0.471
144	144	0.224
145	145	0.12
146	146	0.0138
147	147	0.114
148	148	0.855
149	149	0.825
15	15	0.881
150	150	0.0709
151	151	0.573
152	152	0.00639
153	153	0.971
154	154	0.982
155	155	0.827
156	156	0.991
157	157	0.136
158	158	0.117
159	159	0.476
16	16	0.0639
160	160	0.625
161	161	0.656
162	162	0.309
163	163	0.494
164	164	0.898
165	165	0.489
166	166	0.37
167	167	0.0877
168	168	0.2
169	169	0.11
17	17	0.342
18	18	0.414
19	19	0.701
2	2	0.442
20	20	0.575
21	21	0.678
22	22	0.591
23	23	0.15
24	24	0.0259
25	25	0.944
26	26	0.732
27	27	0.698
28	28	0.522
29	29	0.871
3	3	0.38
30	30	0.143
31	31	0.912
32	32	0.327
33	33	0.147
34	34	0.587
35	35	0.0725
36	36	0.563
37	37	0.147
38	38	0.506
39	39	0.167
4	4	0.932
40	40	0.0763
41	41	0.742
42	42	0.432
43	43	0.615
44	44	0.923
45	45	0.0209
46	46	0.721
47	47	0.317
48	48	0.121
49	49	0.479
5	5	0.904
50	50	0.42
51	51	0.826
52	52	0.0833
53	53	0.526
54	54	0.655
55	55	0.0913
56	56	0.393
57	57	0.56
58	58	0.801
59	59	0.48
6	6	0.458
60	60	0.177
61	61	0.686
62	62	0.856
63	63	0.168
64	64	0.747
65	65	0.934
66	66	0.227
67	67	0.735
68	68	0.145
69	69	0.759
7	7	0.372
70	70	0.165
71	71	0.56
72	72	0.954
73	73	0.00228
74	74	0.077
75	75	0.323
76	76	0.998
77	77	0.0327
78	78	0.0149
79	79	0.365
8	8	0.804
80	80	0.515
81	81	0.196
82	82	0.571
83	83	0.608
84	84	0.974
85	85	0.557
86	86	0.77
87	87	7.29673e-4
88	88	0.816
89	89	0.154
9	9	0.832
90	90	0.43
91	91	0.764
92	92	0.715
93	93	0.52
94	94	0.46
95	95	0.27
96	96	0.86
97	97	0.31
98	98	0.718
99	99	0.0955

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11896

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000254 human gingival epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005050
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005050
+|accession_numbers=CAGE;DRX008294;DRR009166;DRZ000591;DRZ001976;DRZ011941;DRZ013326
+|accession_numbers_RNASeq=sRNA-Seq;DRX037167;DRR041533;DRZ007175
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..2159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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11302-117B6
 |is_a=EFO:0002091;;FF:0000254
 |is_obsolete=
+|library_id=CNhs11896
+|library_id_phase_based=2:CNhs11896
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11302
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACAGTG.11302
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11302
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACAGTG.11302
 |name=Gingival epithelial cells, donor2 (GEA14)
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11896,LSID834,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10011,,,
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@@ Line 62: / Line 82: @@
 |rna_tube_id=117B6
 |rna_weight_ug=8.12834
+|rnaseq_library_id=SRhi10011.ACAGTG
 |sample_age=38
 |sample_category=primary cells
@@ Line 85: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11302-117B6;search_select_hide=table117:FF:11302-117B6
 }}

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Latest revision as of 16:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0