Personal tools

Difference between revisions of "FF:11370-118A2"

From FANTOM5_SSTAR

Jump to: navigation, search
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{f5samples
 
{{f5samples
|id=FF:11370-118A2
+
|DRA_sample_Accession=dog_CAGE@SAMD00053782
|name=Canine Mesenchymal stem cells - bone marrow derived, donor2
+
|accession_numbers=dog_CAGE;DRX057307;DRR063066;DRZ007593;DRZ007606
|sample_id=11370
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|rna_tube_id=118A2
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|rna_box=118
 
|rna_position=A2
 
|sample_cell_lot=N/A
 
|sample_cell_catalog=N/A
 
|sample_company=Cell Applications
 
|rna_lot_number=2036
 
|rna_catalog_number=custom
 
|sample_species=Dog (Canis lupus familaris)
 
|sample_strain=Beagle
 
|sample_dev_stage=
 
|sample_tissue=bone marrow
 
|sample_donor(cell lot)=
 
|sample_sex=unknown
 
|sample_age=U
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_od260/230=
 
|rna_od260/280=
 
|sample_cell_type=mesenchymal stem cell
 
|sample_cell_line=
 
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
 
|rna_weight_ug=10
 
|rna_concentration=1
 
|sample_note=
 
|profile_hcage=CNhs11304,LSID905,release010,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000016,FF:0000001,FF:0000019
 +
|comment=
 +
|created_by=
 +
|creation_date=
 +
|def=
 +
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 37:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
|top_motifs=
 
|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
|is_a=CL:0002540;;EFO:0002091;;FF:0000002;;FF:0000016;;FF:0000019
+
|id=FF:11370-118A2
 +
|is_a=EFO:0002091;;FF:0000019
 +
|is_obsolete=
 +
|library_id=CNhs11304
 +
|name=Canine Mesenchymal stem cells - bone marrow derived, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs11304,LSID905,release010,COMPLETED
 +
|profile_rnaseq=,,,
 +
|profile_srnaseq=,,,
 +
|rna_box=118
 +
|rna_catalog_number=custom
 +
|rna_concentration=1
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
 +
|rna_lot_number=2036
 +
|rna_od260/230=
 +
|rna_od260/280=
 +
|rna_position=A2
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=118A2
 +
|rna_weight_ug=10
 +
|sample_age=U
 +
|sample_category=primary cells
 +
|sample_cell_catalog=N/A
 +
|sample_cell_line=
 +
|sample_cell_lot=N/A
 +
|sample_cell_type=mesenchymal stem cell
 +
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 +
|sample_company=Cell Applications
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_id=11370
 +
|sample_note=
 +
|sample_sex=unknown
 +
|sample_species=Canis lupus familaris
 +
|sample_strain=Beagle
 +
|sample_tissue=bone marrow
 +
|top_motifs=
 +
|xref=
 +
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:11370-118A2;search_select_hide=table117:FF:11370-118A2
 
}}
 
}}

Latest revision as of 00:38, 5 June 2020


Name:Canine Mesenchymal stem cells - bone marrow derived, donor2
Species:Canis lupus familaris
Library ID:CNhs11304
Sample type:primary cells
ZENBU report :link
Additional information
Sample information
strainBeagle
tissuebone marrow
dev stageNA
sexunknown
ageU
cell typemesenchymal stem cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2036
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
dog_CAGE  SAMD00053782
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11304 dog_CAGE DRX057307 DRR063066
Accession ID

Library idBAMCTSS
CNhs11304 DRZ007593 DRZ007606



FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000019 (canine mesenchymal stem cell)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)