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{{f5samples
 
{{f5samples
|DRA_sample_Accession=CAGE@DRS008416
+
|DRA_sample_Accession=CAGE@SAMD00005997
 +
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005997
 +
|accession_numbers=CAGE;DRX008524;DRR009396;DRZ000821;DRZ002206;DRZ012171;DRZ013556
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037055;DRR041421;DRZ007063
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.52!332.12!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.15!156.80!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.89!76.22!IRF6;;chr14:90085820..90085840,-!p6@FOXN3!1.85!69.69!FOXN3;;chr11:34642612..34642646,+!p1@EHF!1.81!64.25!EHF;;chr1:6479968..6479986,-!p1@HES2!1.78!59.89!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.74!65.33!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.71!BNC1;;chr6:34524049..34524089,-!p2@SPDEF!1.70!49.00!SPDEF;;chr12:54785074..54785122,-!p2@ZNF385A!1.67!69.69!ZNF385A;;chr22:19748231..19748317,+!p1@TBX1!1.67!45.73!TBX1;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.73!SPDEF;;chr11:120107344..120107351,+!p1@POU2F3!1.65!52.27!POU2F3;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.00!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.47!SOX7;;chr3:189507432..189507459,+!p1@TP63!1.62!40.29!TP63;;chr5:134369905..134369972,-!p1@PITX1!1.61!59.89!PITX1;;chr6:34524025..34524045,-!p3@SPDEF!1.55!34.85!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.51!65.33!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.47!46.82!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.34!20.69!IRX2;;chr6:29648890..29648944,-!p1@ZFP57!1.29!18.51!ZFP57;;chr3:111314186..111314204,-!p1@ZBED2!1.27!17.42!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!144.83!PPP1R13L;;chr2:122042770..122042785,-!p1@TFCP2L1!1.24!16.33!TFCP2L1;;chr14:38064429..38064486,-!p1@FOXA1!1.24!16.33!FOXA1;;chr2:46524897..46524911,+!p2@EPAS1!1.22!43.56!EPAS1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.21!182.94!ZC3H12A;;chr1:8934931..8934947,-!p4@ENO1!1.18!46.82!ENO1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.07!ZNF750;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.07!IRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.07!TFAP2A;;chr8:128748308..128748324,+!p2@MYC!1.13!339.74!MYC;;chr6:10415263..10415274,-!p8@TFAP2A!1.11!11.98!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.09!121.96!KLF5;;chr8:49833948..49833973,-!p2@SNAI2!1.09!72.96!SNAI2;;chr20:22565185..22565223,-!p3@FOXA2!1.08!10.89!FOXA2;;chr1:8938709..8938720,-!p3@ENO1!1.03!476.94!ENO1;;chr11:34645791..34645836,+!p3@EHF!1.03!9.80!EHF;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.80!PAX9;;chr17:41623692..41623715,-!p1@ETV4!1.02!41.38!ETV4;;chr5:72744594..72744609,-!p1@FOXD1!0.99!41.38!FOXD1;;chr15:83953373..83953386,-!p2@BNC1!0.99!8.71!BNC1;;chr17:45928443..45928473,-!p2@SP6!0.99!8.71!SP6;;chr17:8027418..8027432,-!p1@HES7!0.99!8.71!HES7;;chr1:209979449..209979460,-!p3@IRF6!0.99!8.71!IRF6;;chr11:129245526..129245553,+!p1@BARX2!0.99!8.71!BARX2;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.87!ARNTL2;;chr14:21566731..21566836,-!p1@ZNF219!0.96!90.38!ZNF219;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.07!ZFP64;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.13!TWIST2;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.07!FOXQ1;;chr19:42636586..42636607,-!p1@POU2F2!0.94!21.78!POU2F2;;chr5:134369848..134369853,-!p6@PITX1!0.94!7.62!PITX1;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.62!NFE2L1;;chr1:149858461..149858479,+!p1@BOLA1!0.92!2966.19!BOLA1;;chr12:66218598..66218645,+!p2@HMGA2!0.92!34.85!HMGA2;;chr2:46524878..46524891,+!p3@EPAS1!0.92!13.07!EPAS1;;chr11:65686802..65686818,+!p6@DRAP1!0.89!11.98!DRAP1;;chr11:34642656..34642667,+!p2@EHF!0.88!6.53!EHF;;chr15:101069113..101069169,-!p1@CERS3!0.88!6.53!CERS3;;chr16:67881647..67881663,-!p3@CENPT!0.88!6.53!CENPT;;chr18:3447536..3447542,+!p23@TGIF1!0.88!6.53!TGIF1;;chr5:134369879..134369898,-!p2@PITX1!0.88!6.53!PITX1;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.53!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.53!GRHL2;;chr20:22564895..22564910,-!p1@FOXA2!0.88!6.53!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.53!FOXA2;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.53!KDM5D;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.49!ZNF296;;chr2:70142232..70142251,+!p1@MXD1!0.86!37.02!MXD1;;chr8:128747661..128747703,+!p6@MYC!0.86!8.71!MYC;;chr8:128747757..128747800,+!p7@MYC!0.86!8.71!MYC;;chr12:66218836..66218888,+!p1@HMGA2!0.85!59.89!HMGA2;;chr12:48298765..48298783,-!p2@VDR!0.85!13.07!VDR;;chrX:48900782..48900793,-!p3@TFE3!0.85!11.98!TFE3;;chr17:41623667..41623682,-!p8@ETV4!0.85!6.53!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.62!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!430.12!TAX1BP3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.78!ZBTB7B;;chr1:935398..935465,-!p2@HES4!0.81!11.98!HES4;;chr1:37947257..37947292,+!p4@ZC3H12A!0.81!5.44!ZC3H12A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.44!OVOL2;;chr17:7492504..7492520,-!p3@SOX15!0.81!5.44!SOX15;;chr6:10413188..10413249,-!p7@TFAP2A!0.81!5.44!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.81!5.44!TFAP2A;;chr6:10420285..10420304,-!p18@TFAP2A!0.81!5.44!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.44!ZNF165;;chr8:128747729..128747748,+!p14@MYC!0.81!5.44!MYC;;chr12:66218469..66218477,+!p16@HMGA2!0.81!5.44!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.81!5.44!OTX1;;chr12:66218255..66218304,+!p3@HMGA2!0.80!15.24!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.78!145.91!FOSL1;;chr18:3448455..3448480,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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 
|ffid_belonging_in_development=CL:0000223,CL:0000377
 
|ffid_belonging_in_development=CL:0000223,CL:0000377
 
|fonse_cell_line=
 
|fonse_cell_line=
Line 39: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.ctss.bed.gz
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11441-118I1
 
|id=FF:11441-118I1
 
|is_a=EFO:0002091;;FF:0000189
 
|is_a=EFO:0002091;;FF:0000189
 
|is_obsolete=
 
|is_obsolete=
|library_ids=CNhs12051
+
|library_id=CNhs12051
 +
|library_id_phase_based=2:CNhs12051
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11441
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.CGATGT.11441
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11441
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.CGATGT.11441
 
|name=Tracheal Epithelial Cells, donor3
 
|name=Tracheal Epithelial Cells, donor3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 48: Line 65:
 
|profile_cagescan=,,,
 
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|profile_hcage=CNhs12051,LSID838,release011,COMPLETED
 
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|profile_rnaseq=
 
|profile_srnaseq=SRhi10005,,,
 
|profile_srnaseq=SRhi10005,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 
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Line 64: Line 82:
 
|rna_tube_id=118I1
 
|rna_tube_id=118I1
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10005.CGATGT
 
|sample_age=60
 
|sample_age=60
 
|sample_category=primary cells
 
|sample_category=primary cells
Line 87: Line 106:
 
|top_motifs=PPARG:2.66882242014;POU2F1..3:2.60689269201;TP53:2.06712367558;NR5A1,2:1.92016215289;TBX4,5:1.807129378;ZEB1:1.74275173258;VSX1,2:1.74089773806;MYOD1:1.57091956367;SNAI1..3:1.45801319394;ZNF148:1.3273899442;PAX1,9:1.2745569293;TBP:1.25463675013;XCPE1{core}:1.07233238911;GTF2A1,2:1.00687488442;RXRA_VDR{dimer}:0.929793048384;LMO2:0.806394641039;HOX{A5,B5}:0.777598947443;TFAP2{A,C}:0.748523298822;ESRRA:0.729572306136;TEAD1:0.722318695658;MTF1:0.712457470197;bHLH_family:0.677147965838;FOS_FOS{B,L1}_JUN{B,D}:0.670035639784;TFCP2:0.664665774838;CEBPA,B_DDIT3:0.634895692866;POU6F1:0.625875823606;BACH2:0.622657147082;AR:0.622231098958;GFI1B:0.605291952278;PBX1:0.603283389118;GLI1..3:0.586401754243;TLX1..3_NFIC{dimer}:0.536358005377;ZNF423:0.528425415046;NFIL3:0.501843836577;EBF1:0.497872448746;HMX1:0.493762317269;HIF1A:0.478595091092;GZF1:0.476518054707;RXR{A,B,G}:0.445561471134;ZNF238:0.413344640566;IKZF1:0.413221938495;TFAP4:0.401793290595;NKX3-2:0.396870769918;YY1:0.395291085741;HLF:0.363094800175;FOSL2:0.363020636397;SP1:0.361441602996;NANOG:0.346280441421;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.339508713577;ARID5B:0.329549043251;NKX2-3_NKX2-5:0.322228567035;ONECUT1,2:0.306280991358;HAND1,2:0.249657903321;POU1F1:0.231280935878;ZBTB6:0.203222617966;ELK1,4_GABP{A,B1}:0.198683471227;REST:0.198087877956;SOX{8,9,10}:0.187427582843;NFE2L1:0.181136845337;NFE2:0.176123619651;NR1H4:0.16613544008;POU3F1..4:0.159377057196;PAX8:0.153928354635;CRX:0.129335734345;ADNP_IRX_SIX_ZHX:0.128373714134;ESR1:0.125944063002;OCT4_SOX2{dimer}:0.108959409476;NFKB1_REL_RELA:0.0668626796556;GFI1:0.0594310927444;PAX2:0.0568792734876;SOX17:0.0449626781325;ATF4:0.0387581660536;NR6A1:0.0323069381848;GATA6:0.0223997148827;SPZ1:-0.0191849150827;HNF4A_NR2F1,2:-0.0386715301011;NR3C1:-0.0451669049118;HIC1:-0.0653697051681;LEF1_TCF7_TCF7L1,2:-0.0845773454401;POU5F1:-0.0850237575881;PAX5:-0.0916819625684;UFEwm:-0.0917603634093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.09904294614;STAT5{A,B}:-0.109242868135;FOXL1:-0.133640597618;TFDP1:-0.136507275355;CREB1:-0.14528769953;ETS1,2:-0.162576652903;HNF1A:-0.184235550879;NKX2-2,8:-0.1975386294;HES1:-0.201036787793;NFY{A,B,C}:-0.246971941668;ZNF143:-0.252281211282;SMAD1..7,9:-0.264311168808;IRF7:-0.268912556529;FOXQ1:-0.269237104063;TFAP2B:-0.270851556858;ZIC1..3:-0.301521920129;RBPJ:-0.302522951637;LHX3,4:-0.305007396996;JUN:-0.314731128678;STAT2,4,6:-0.315735160351;EP300:-0.319087452177;NFE2L2:-0.355645518837;RREB1:-0.373964307824;E2F1..5:-0.374740116845;SOX2:-0.384186352008;SRF:-0.387772928267;MED-1{core}:-0.391894314368;HOX{A4,D4}:-0.460870033354;MAFB:-0.46820098612;SPIB:-0.47708834556;CDC5L:-0.479620843691;GTF2I:-0.486559882303;RUNX1..3:-0.498664945241;MEF2{A,B,C,D}:-0.515480280048;MAZ:-0.517550753852;ELF1,2,4:-0.531151773926;RORA:-0.541718694892;CUX2:-0.552835916881;ATF5_CREB3:-0.561565923321;SPI1:-0.577081816306;MYB:-0.608256243393;ATF2:-0.613965761365;TLX2:-0.614561947279;TAL1_TCF{3,4,12}:-0.633622513195;AHR_ARNT_ARNT2:-0.644792184879;NANOG{mouse}:-0.666469075227;GCM1,2:-0.673234971658;RFX1:-0.684394536354;FOXN1:-0.692058113811;T:-0.69704062248;KLF4:-0.710021467497;ATF6:-0.730845922703;PITX1..3:-0.738690383211;NFIX:-0.744493871529;EN1,2:-0.746455819446;NHLH1,2:-0.76178323062;NRF1:-0.772421638189;HSF1,2:-0.790111242334;FOXM1:-0.820005244891;HOX{A6,A7,B6,B7}:-0.847699411736;TOPORS:-0.861838184106;FOX{F1,F2,J1}:-0.870285865871;ALX1:-0.882167901587;PATZ1:-0.893837775942;PRRX1,2:-0.898122360639;MYBL2:-0.903086099985;PAX4:-0.916257258006;NFATC1..3:-0.943831492204;RFX2..5_RFXANK_RFXAP:-0.959912148065;HOXA9_MEIS1:-0.984257780783;ZFP161:-1.00026922694;MZF1:-1.01268314233;ALX4:-1.02915401049;MYFfamily:-1.0406863237;MTE{core}:-1.05154096247;EGR1..3:-1.11084294493;NKX2-1,4:-1.12764806286;AIRE:-1.15003526915;TEF:-1.17252870978;PAX3,7:-1.17427656135;FOXA2:-1.1770355636;FOX{I1,J2}:-1.19446991317;XBP1:-1.22185604661;PAX6:-1.2221252163;IRF1,2:-1.23762941697;DMAP1_NCOR{1,2}_SMARC:-1.28087602289;BREu{core}:-1.31857453565;FOXO1,3,4:-1.33040004655;TGIF1:-1.34952250808;STAT1,3:-1.37827384233;PDX1:-1.37883656637;PRDM1:-1.38764393318;CDX1,2,4:-1.40381324222;SOX5:-1.42809391173;FOX{D1,D2}:-1.44729480462;FOXP3:-1.5007266671;ZNF384:-1.52451078927;EVI1:-1.5471623422;SREBF1,2:-1.63846503704;FOXP1:-1.66715442771;NKX3-1:-1.70961572994;ZBTB16:-1.77854040299;BPTF:-1.80806839807;HBP1_HMGB_SSRP1_UBTF:-1.81582279654;NKX6-1,2:-1.91597822746;GATA4:-2.0412756469;DBP:-2.06646963669;FOXD3:-2.06978069434;HMGA1,2:-2.24113858768;IKZF2:-2.27104570117
 
|top_motifs=PPARG:2.66882242014;POU2F1..3:2.60689269201;TP53:2.06712367558;NR5A1,2:1.92016215289;TBX4,5:1.807129378;ZEB1:1.74275173258;VSX1,2:1.74089773806;MYOD1:1.57091956367;SNAI1..3:1.45801319394;ZNF148:1.3273899442;PAX1,9:1.2745569293;TBP:1.25463675013;XCPE1{core}:1.07233238911;GTF2A1,2:1.00687488442;RXRA_VDR{dimer}:0.929793048384;LMO2:0.806394641039;HOX{A5,B5}:0.777598947443;TFAP2{A,C}:0.748523298822;ESRRA:0.729572306136;TEAD1:0.722318695658;MTF1:0.712457470197;bHLH_family:0.677147965838;FOS_FOS{B,L1}_JUN{B,D}:0.670035639784;TFCP2:0.664665774838;CEBPA,B_DDIT3:0.634895692866;POU6F1:0.625875823606;BACH2:0.622657147082;AR:0.622231098958;GFI1B:0.605291952278;PBX1:0.603283389118;GLI1..3:0.586401754243;TLX1..3_NFIC{dimer}:0.536358005377;ZNF423:0.528425415046;NFIL3:0.501843836577;EBF1:0.497872448746;HMX1:0.493762317269;HIF1A:0.478595091092;GZF1:0.476518054707;RXR{A,B,G}:0.445561471134;ZNF238:0.413344640566;IKZF1:0.413221938495;TFAP4:0.401793290595;NKX3-2:0.396870769918;YY1:0.395291085741;HLF:0.363094800175;FOSL2:0.363020636397;SP1:0.361441602996;NANOG:0.346280441421;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.339508713577;ARID5B:0.329549043251;NKX2-3_NKX2-5:0.322228567035;ONECUT1,2:0.306280991358;HAND1,2:0.249657903321;POU1F1:0.231280935878;ZBTB6:0.203222617966;ELK1,4_GABP{A,B1}:0.198683471227;REST:0.198087877956;SOX{8,9,10}:0.187427582843;NFE2L1:0.181136845337;NFE2:0.176123619651;NR1H4:0.16613544008;POU3F1..4:0.159377057196;PAX8:0.153928354635;CRX:0.129335734345;ADNP_IRX_SIX_ZHX:0.128373714134;ESR1:0.125944063002;OCT4_SOX2{dimer}:0.108959409476;NFKB1_REL_RELA:0.0668626796556;GFI1:0.0594310927444;PAX2:0.0568792734876;SOX17:0.0449626781325;ATF4:0.0387581660536;NR6A1:0.0323069381848;GATA6:0.0223997148827;SPZ1:-0.0191849150827;HNF4A_NR2F1,2:-0.0386715301011;NR3C1:-0.0451669049118;HIC1:-0.0653697051681;LEF1_TCF7_TCF7L1,2:-0.0845773454401;POU5F1:-0.0850237575881;PAX5:-0.0916819625684;UFEwm:-0.0917603634093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.09904294614;STAT5{A,B}:-0.109242868135;FOXL1:-0.133640597618;TFDP1:-0.136507275355;CREB1:-0.14528769953;ETS1,2:-0.162576652903;HNF1A:-0.184235550879;NKX2-2,8:-0.1975386294;HES1:-0.201036787793;NFY{A,B,C}:-0.246971941668;ZNF143:-0.252281211282;SMAD1..7,9:-0.264311168808;IRF7:-0.268912556529;FOXQ1:-0.269237104063;TFAP2B:-0.270851556858;ZIC1..3:-0.301521920129;RBPJ:-0.302522951637;LHX3,4:-0.305007396996;JUN:-0.314731128678;STAT2,4,6:-0.315735160351;EP300:-0.319087452177;NFE2L2:-0.355645518837;RREB1:-0.373964307824;E2F1..5:-0.374740116845;SOX2:-0.384186352008;SRF:-0.387772928267;MED-1{core}:-0.391894314368;HOX{A4,D4}:-0.460870033354;MAFB:-0.46820098612;SPIB:-0.47708834556;CDC5L:-0.479620843691;GTF2I:-0.486559882303;RUNX1..3:-0.498664945241;MEF2{A,B,C,D}:-0.515480280048;MAZ:-0.517550753852;ELF1,2,4:-0.531151773926;RORA:-0.541718694892;CUX2:-0.552835916881;ATF5_CREB3:-0.561565923321;SPI1:-0.577081816306;MYB:-0.608256243393;ATF2:-0.613965761365;TLX2:-0.614561947279;TAL1_TCF{3,4,12}:-0.633622513195;AHR_ARNT_ARNT2:-0.644792184879;NANOG{mouse}:-0.666469075227;GCM1,2:-0.673234971658;RFX1:-0.684394536354;FOXN1:-0.692058113811;T:-0.69704062248;KLF4:-0.710021467497;ATF6:-0.730845922703;PITX1..3:-0.738690383211;NFIX:-0.744493871529;EN1,2:-0.746455819446;NHLH1,2:-0.76178323062;NRF1:-0.772421638189;HSF1,2:-0.790111242334;FOXM1:-0.820005244891;HOX{A6,A7,B6,B7}:-0.847699411736;TOPORS:-0.861838184106;FOX{F1,F2,J1}:-0.870285865871;ALX1:-0.882167901587;PATZ1:-0.893837775942;PRRX1,2:-0.898122360639;MYBL2:-0.903086099985;PAX4:-0.916257258006;NFATC1..3:-0.943831492204;RFX2..5_RFXANK_RFXAP:-0.959912148065;HOXA9_MEIS1:-0.984257780783;ZFP161:-1.00026922694;MZF1:-1.01268314233;ALX4:-1.02915401049;MYFfamily:-1.0406863237;MTE{core}:-1.05154096247;EGR1..3:-1.11084294493;NKX2-1,4:-1.12764806286;AIRE:-1.15003526915;TEF:-1.17252870978;PAX3,7:-1.17427656135;FOXA2:-1.1770355636;FOX{I1,J2}:-1.19446991317;XBP1:-1.22185604661;PAX6:-1.2221252163;IRF1,2:-1.23762941697;DMAP1_NCOR{1,2}_SMARC:-1.28087602289;BREu{core}:-1.31857453565;FOXO1,3,4:-1.33040004655;TGIF1:-1.34952250808;STAT1,3:-1.37827384233;PDX1:-1.37883656637;PRDM1:-1.38764393318;CDX1,2,4:-1.40381324222;SOX5:-1.42809391173;FOX{D1,D2}:-1.44729480462;FOXP3:-1.5007266671;ZNF384:-1.52451078927;EVI1:-1.5471623422;SREBF1,2:-1.63846503704;FOXP1:-1.66715442771;NKX3-1:-1.70961572994;ZBTB16:-1.77854040299;BPTF:-1.80806839807;HBP1_HMGB_SSRP1_UBTF:-1.81582279654;NKX6-1,2:-1.91597822746;GATA4:-2.0412756469;DBP:-2.06646963669;FOXD3:-2.06978069434;HMGA1,2:-2.24113858768;IKZF2:-2.27104570117
 
|xref=
 
|xref=
}} {{DRAAccessionNumbers
+
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11441-118I1;search_select_hide=table117:FF:11441-118I1
|DRA_sample_Accession=CAGE@DRS008416
 
|accession_numbers=DRX008524;DRR009396;DRZ000821;DRZ002206;CAGE
 
|library_id=CNhs12051
 
 
}}
 
}}

Latest revision as of 09:01, 4 June 2020

Name:Tracheal Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12051
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetrachea
dev stage60 years old adult
sexmale
age60
cell typetracheal epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1225
catalog numberCA504-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005997
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12051 CAGE DRX008524 DRR009396
Accession ID Hg19

Library idBAMCTSS
CNhs12051 DRZ000821 DRZ002206
Accession ID Hg38

Library idBAMCTSS
CNhs12051 DRZ012171 DRZ013556
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005997
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.CGATGT sRNA-Seq DRX037055 DRR041421
Accession ID Hg19

Library idBAMCTSS
SRhi10005.CGATGT DRZ007063


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.177
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.116
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0507
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.426
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.729
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.5
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.181
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.301
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.32
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.233
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.32
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12051

Jaspar motifP-value
MA0002.20.404
MA0003.10.283
MA0004.10.999
MA0006.10.22
MA0007.10.136
MA0009.10.246
MA0014.10.396
MA0017.10.0548
MA0018.20.377
MA0019.10.358
MA0024.10.36
MA0025.10.587
MA0027.10.304
MA0028.10.493
MA0029.10.335
MA0030.10.343
MA0031.10.0295
MA0035.20.0816
MA0038.10.253
MA0039.20.0224
MA0040.10.928
MA0041.10.345
MA0042.10.944
MA0043.10.758
MA0046.10.329
MA0047.20.629
MA0048.10.767
MA0050.14.34373e-5
MA0051.10.00642
MA0052.10.309
MA0055.10.0161
MA0057.10.0732
MA0058.10.753
MA0059.10.182
MA0060.10.383
MA0061.10.306
MA0062.20.679
MA0065.28.90253e-4
MA0066.10.0727
MA0067.10.308
MA0068.10.0249
MA0069.10.896
MA0070.10.712
MA0071.10.551
MA0072.10.561
MA0073.10.608
MA0074.10.95
MA0076.10.816
MA0077.10.584
MA0078.10.155
MA0079.20.311
MA0080.20.193
MA0081.10.364
MA0083.10.34
MA0084.10.31
MA0087.10.338
MA0088.10.22
MA0090.10.0891
MA0091.10.579
MA0092.10.459
MA0093.10.908
MA0099.24.21634e-17
MA0100.10.0211
MA0101.10.514
MA0102.20.305
MA0103.11.22841e-5
MA0104.20.74
MA0105.10.304
MA0106.11.867e-5
MA0107.10.488
MA0108.24.21558e-6
MA0111.10.958
MA0112.20.00632
MA0113.10.288
MA0114.10.0194
MA0115.10.626
MA0116.10.1
MA0117.10.848
MA0119.10.193
MA0122.10.417
MA0124.10.821
MA0125.10.907
MA0131.10.345
MA0135.10.0449
MA0136.10.799
MA0137.20.124
MA0138.20.252
MA0139.10.382
MA0140.10.719
MA0141.10.0491
MA0142.10.00377
MA0143.10.841
MA0144.10.849
MA0145.10.0669
MA0146.10.0378
MA0147.10.513
MA0148.10.393
MA0149.10.0513
MA0150.10.0372
MA0152.10.26
MA0153.10.109
MA0154.10.125
MA0155.10.331
MA0156.10.472
MA0157.10.199
MA0159.10.112
MA0160.10.136
MA0162.10.0609
MA0163.10.0804
MA0164.10.637
MA0258.10.039
MA0259.10.884



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12051

Novel motifP-value
10.574
100.913
1000.365
1010.00104
1020.258
1030.135
1040.22
1050.0617
1060.021
1070.052
1080.383
1090.00288
110.0398
1100.0545
1110.894
1120.425
1130.595
1140.369
1150.439
1160.417
1170.277
1180.938
1190.209
120.264
1200.337
1210.815
1220.0507
1230.552
1240.487
1250.513
1260.333
1270.0655
1280.24
1290.205
130.0593
1300.141
1310.211
1320.666
1330.00974
1340.133
1350.95
1360.19
1370.315
1380.984
1390.565
140.879
1400.223
1410.448
1420.013
1430.569
1440.149
1450.587
1460.0284
1470.0969
1480.0733
1490.543
150.755
1500.234
1510.5
1520.0336
1530.807
1540.533
1550.407
1560.163
1570.842
1580.272
1590.898
160.0988
1600.085
1610.254
1620.237
1630.539
1640.765
1650.467
1660.114
1670.333
1680.944
1690.0459
170.113
180.157
190.489
20.144
200.977
210.6
220.176
230.367
240.205
250.694
260.0402
270.298
280.934
290.141
30.478
300.111
310.452
320.565
330.142
340.51
350.857
360.36
370.21
380.252
390.425
40.406
400.0033
410.93
420.799
430.447
440.712
450.218
460.322
470.271
480.0849
490.724
50.579
500.575
510.763
520.258
530.585
540.92
550.953
560.428
570.399
580.816
590.0408
60.411
600.151
610.718
620.866
630.225
640.16
650.178
660.369
670.593
680.54
690.465
70.452
700.0139
710.156
720.964
730.0104
740.0752
750.226
760.851
770.00545
780.114
790.852
80.132
800.523
810.291
820.776
830.913
840.386
850.666
860.728
870.00616
880.78
890.0788
90.618
900.0477
910.241
920.967
930.91
940.997
950.0138
960.736
970.889
980.296
990.0387



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12051


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)