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Difference between revisions of "FF:11454-119A5"

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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|data_phase=1
+
|data_phase=2
|datafreeze_phase=1
+
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.78!156.85!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.65!58.92!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!48.24!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.49!77.86!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.48!843.20!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.33!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.71!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.00!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.22!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.35!31.08!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.07!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.31!36.75!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.31!24.44!TFAP2C;;chr2:239756739..239756755,+!p2@TWIST2!1.30!31.89!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.06!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.94!TWIST2;;chr6:85474299..85474324,-!p1@TBX18!1.19!26.06!TBX18;;chr17:46675558..46675577,-!p2@HOXB6!1.13!12.63!HOXB6;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.82!RFX8;;chr18:52969844..52969895,-!p27@TCF4!1.08!11.01!TCF4;;chr15:83953397..83953425,-!p1@BNC1!1.02!11.01!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.55!HOXC8;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.23!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.00!8.90!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.74!HOXD8;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.12!OSR1;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.42!IRX1;;chr20:42543441..42543497,+!p1@TOX2!0.96!37.39!TOX2;;chr17:41622765..41622821,-!p2@ETV4!0.96!12.63!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.93!HOXB6;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.90!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.77!HOXC4;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.82!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.29!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.52!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.91!7.12!ZIC1;;chr17:41623009..41623053,-!p4@ETV4!0.90!11.49!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.96!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.90!6.96!RUNX1T1;;chr18:52969674..52969685,-!p24@TCF4!0.89!6.80!TCF4;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.64!HOXB3;;chr5:158526917..158526932,-!p1@EBF1!0.87!16.51!EBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.96!SHOX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.47!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.47!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.86!6.64!GLIS1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.31!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.86!6.31!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.86!6.31!IRX2;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.08!PPARG;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.84!5.99!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.55!FOXM1;;chr6:85474198..85474212,-!p3@TBX18!0.81!5.50!TBX18;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.50!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.80!17.97!AHRR;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.11!TOX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.26!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!0.79!5.18!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.78!144.07!FOSL1;;chr12:66218469..66218477,+!p16@HMGA2!0.78!5.02!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.02!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.84!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.12!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.10!BRCA1;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.15!FOXF1;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.15!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.86!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.86!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.86!ZIC1;;chr7:14029283..14029311,-!p1@ETV1!0.76!27.68!ETV1;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.80!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.76!4.69!FOXL1;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.69!HOXC10;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.45!HOXB2;;chr17:41623692..41623715,-!p1@ETV4!0.74!21.37!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.04!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.26!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.74!4.53!HAND2;;chr19:42636586..42636607,-!p1@POU2F2!0.73!13.11!POU2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.83!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.72!29.95!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.65!TWIST1;;chr17:46667594..46667619,-!p1@HOXB3!0.72!4.21!HOXB3;;chr17:46671108..46671147,-!p1@HOXB5!0.72!4.21!HOXB5;;chr17:46622070..46622109,-!p1@HOXB2!0.71!9.87!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!4.05!HOXB8;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.21!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.88!HOXB8;;chr21:47063625..47063658,+!p1@PCBP3!0.68!18.78!PCBP3;;chr17:59477233..59477263,+!p1@TBX2!0.68!13.11!TBX2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.83!HOXB7;;chr6:45390025..45390076,+!p2@RUNX2!0.67!9.71!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.64!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.83!HOXB4;;chr5:3595934..3595957,+!p2@IRX1!0.67!3.72!IRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.67!3.72!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.72!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.15!ELK3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.21!HOXB2;;chr5:3595961..3595975,+!p3@IRX1!0.66!3.56!IRX1;;chr2:119604456..119604501,-!p2@EN1!0.66!3.56!EN1;;chr2:119605214..119605230,-!p1@EN1!0.66!3.56!EN1;;chr6:34204672..34204692,+!p1@HMGA1!0.65!455.02!HMGA1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.55!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.69!PRRX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.65!3.88!ZNF385D;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.75!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.75!HMGA2;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.20!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.64!3.40!HOXA9;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.40!HOXC8;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.40!TBX15;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.40!RFX8;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.40!SHOX2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.40!HOXB6;;chr6:31126291..31126399,+!p1@TCF19!0.63!36.26!TCF19;;chr4:4861385..4861398,+!p1@MSX1!0.63!11.17!MSX1;;chr21:36260773..36260804,-!p7@RUNX1!0.63!4.69!RUNX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.24!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.24!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.63!3.24!SP9;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.24!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.18!ENO1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.67!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.61!5.67!ZNF492;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.08!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.08!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr12:66358080..66358094,+!p15@HMGA2!0.61!3.08!HMGA2;;chr5:158527139..158527161,-!p5@EBF1!0.61!3.08!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.87!WDHD1;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.88!DPF1;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.34!MATR3;;chr2:169312600..169312606,+!p2@CERS6!0.59!5.02!CERS6;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.72!HOXC4;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.91!HOXC6;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.91!ZBTB38;;chr5:158527104..158527135,-!p4@EBF1!0.59!2.91!EBF1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!46.30!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.81!TBX3;;chr1:8934931..8934947,-!p4@ENO1!0.58!11.01!ENO1;;chr11:19263192..19263222,-!p2@E2F8!0.58!3.56!E2F8;;chr8:128748308..128748324,+!p2@MYC!0.57!93.40!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.57!3.08!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.57!2.75!PRRX1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.75!HOXB6;;chr2:102091590..102091601,-!p5@RFX8!0.57!2.75!RFX8;;chr3:147111198..147111225,+!p4@ZIC1!0.57!2.75!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.57!2.75!ZNF385D;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.59!TEAD4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.44!LRRFIP2;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.98!SIX1;;chr3:12329320..12329338,+!p4@PPARG!0.56!2.91!PPARG;;chr2:96012353..96012378,+!p4@KCNIP3!0.56!2.59!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.56!2.59!ZNF732;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.59!HOXC4;;chr17:46671504..46671541,-!p2@HOXB5!0.56!2.59!HOXB5;;chr17:46675586..46675600,-!p6@HOXB6!0.56!2.59!HOXB6;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.71!AEBP1;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.21!MXD3;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.53!ZBTB16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.43!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.54!2.43!ETV4;;chrX:136648643..136648711,+!p2@ZIC3!0.54!2.43!ZIC3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.76!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.53!8.58!GLI3;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.08!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.83!IRX3;;chr4:206390..206444,+!p1@ZNF876P!0.52!4.69!ZNF876P;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.43!MYBL2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.26!ZHX3;;chr4:26322267..26322334,+!p3@RBPJ!0.51!6.47!RBPJ;;chr2:185463247..185463263,+!p1@ZNF804A!0.51!4.53!ZNF804A;;chr12:66218003..66218018,+!p9@HMGA2!0.51!2.91!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.51!2.27!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.51!2.27!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.51!2.27!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!0.51!2.27!ZIC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.51!2.27!PEG3;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.27!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.51!2.27!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.51!2.27!EBF2;;chr12:77459306..77459365,-!p1@E2F7!0.50!35.61!E2F7;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.5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90076,+!p2@RUNX2!0.67!9.71!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.64!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.83!HOXB4;;chr5:3595934..3595957,+!p2@IRX1!0.67!3.72!IRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.67!3.72!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.72!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.15!ELK3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.21!HOXB2;;chr5:3595961..3595975,+!p3@IRX1!0.66!3.56!IRX1;;chr2:119604456..119604501,-!p2@EN1!0.66!3.56!EN1;;chr2:119605214..119605230,-!p1@EN1!0.66!3.56!EN1;;chr6:34204672..34204692,+!p1@HMGA1!0.65!455.02!HMGA1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.55!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.69!PRRX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.65!3.88!ZNF385D;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.75!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.75!HMGA2;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.20!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.64!3.40!HOXA9;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.40!HOXC8;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.40!TBX15;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.40!RFX8;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.40!SHOX2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.40!HOXB6;;chr6:31126291..31126399,+!p1@TCF19!0.63!36.26!TCF19;;chr4:4861385..4861398,+!p1@MSX1!0.63!11.17!MSX1;;chr21:36260773..36260804,-!p7@RUNX1!0.63!4.69!RUNX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.24!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.24!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.63!3.24!SP9;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.24!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.18!ENO1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.67!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.61!5.67!ZNF492;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.08!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.08!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr12:66358080..66358094,+!p15@HMGA2!0.61!3.08!HMGA2;;chr5:158527139..158527161,-!p5@EBF1!0.61!3.08!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.87!WDHD1;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.88!DPF1;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.34!MATR3;;chr2:169312600..169312606,+!p2@CERS6!0.59!5.02!CERS6;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.72!HOXC4;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.91!HOXC6;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.91!ZBTB38;;chr5:158527104..158527135,-!p4@EBF1!0.59!2.91!EBF1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!46.30!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.81!TBX3;;chr1:8934931..8934947,-!p4@ENO1!0.58!11.01!ENO1;;chr11:19263192..19263222,-!p2@E2F8!0.58!3.56!E2F8;;chr8:128748308..128748324,+!p2@MYC!0.57!93.40!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.57!3.08!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.57!2.75!PRRX1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.75!HOXB6;;chr2:102091590..102091601,-!p5@RFX8!0.57!2.75!RFX8;;chr3:147111198..147111225,+!p4@ZIC1!0.57!2.75!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.57!2.75!ZNF385D;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.59!TEAD4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.44!LRRFIP2;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.98!SIX1;;chr3:12329320..12329338,+!p4@PPARG!0.56!2.91!PPARG;;chr2:96012353..96012378,+!p4@KCNIP3!0.56!2.59!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.56!2.59!ZNF732;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.59!HOXC4;;chr17:46671504..46671541,-!p2@HOXB5!0.56!2.59!HOXB5;;chr17:46675586..46675600,-!p6@HOXB6!0.56!2.59!HOXB6;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.71!AEBP1;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.21!MXD3;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.53!ZBTB16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.43!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.54!2.43!ETV4;;chrX:136648643..136648711,+!p2@ZIC3!0.54!2.43!ZIC3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.76!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.53!8.58!GLI3;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.08!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.83!IRX3;;chr4:206390..206444,+!p1@ZNF876P!0.52!4.69!ZNF876P;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.43!MYBL2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.26!ZHX3;;chr4:26322267..26322334,+!p3@RBPJ!0.51!6.47!RBPJ;;chr2:185463247..185463263,+!p1@ZNF804A!0.51!4.53!ZNF804A;;chr12:66218003..66218018,+!p9@HMGA2!0.51!2.91!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.51!2.27!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.51!2.27!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.51!2.27!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!0.51!2.27!ZIC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.51!2.27!PEG3;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.27!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.51!2.27!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.51!2.27!EBF2;;chr12:77459306..77459365,-!p1@E2F7!0.50!35.61!E2F7;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.5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Line 45: Line 45:
 
|is_obsolete=
 
|is_obsolete=
 
|library_id=CNhs12055
 
|library_id=CNhs12055
|library_id_phase_based=1:CNhs12055
+
|library_id_phase_based=2:CNhs12055
|name=Fibroblast - Dermal, donor5
+
|name="Fibroblast - Dermal, donor5"
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
|profile_hcage=CNhs12055,LSID838,release011,COMPLETED
+
|profile_hcage="CNhs12055,LSID838,release011,COMPLETED"
|profile_rnaseq=,,,
+
|profile_rnaseq=
|profile_srnaseq=,,,
+
|profile_srnaseq=",,,"
 
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Revision as of 09:28, 27 November 2014


Name:"Fibroblast - Dermal, donor5"
Species:Human (Homo sapiens)
Library ID:CNhs12055
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueskin
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4823
catalog numberSC2305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005417
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12055 CAGE DRX008258 DRR009130
Accession ID Hg19

Library idBAMCTSS
CNhs12055 DRZ000555 DRZ001940
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>dataNo results for this sample

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs12055This sample isn't target for the analysis

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs12055This sample isn't target for the analysis

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: "CNhs12055


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)