FF:11749-123G3: Difference between revisions

Latest revision as of 18:17, 4 June 2020

Name:	mesenchymal precursor cell - adipose, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12365
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005254

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12365		CAGE		DRX008547		DRR009419

Accession ID Hg19

Library id		BAM		CTSS
CNhs12365		DRZ000844		DRZ002229

Accession ID Hg38

Library id		BAM		CTSS
CNhs12365		DRZ012194		DRZ013579

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0709
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.192
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.607
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00854
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0252
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0525
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.192
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0579
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.192
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.181
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.192
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.324
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.577
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.192
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.324
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.577
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.884
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12365

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.655
MA0003.1	MA0003.1	0.36
MA0004.1	MA0004.1	0.757
MA0006.1	MA0006.1	0.967
MA0007.1	MA0007.1	0.36
MA0009.1	MA0009.1	0.125
MA0014.1	MA0014.1	0.659
MA0017.1	MA0017.1	0.795
MA0018.2	MA0018.2	1.01248e-5
MA0019.1	MA0019.1	0.841
MA0024.1	MA0024.1	0.0428
MA0025.1	MA0025.1	0.00254
MA0027.1	MA0027.1	0.322
MA0028.1	MA0028.1	0.869
MA0029.1	MA0029.1	0.255
MA0030.1	MA0030.1	0.00259
MA0031.1	MA0031.1	0.0163
MA0035.2	MA0035.2	0.105
MA0038.1	MA0038.1	0.0606
MA0039.2	MA0039.2	0.169
MA0040.1	MA0040.1	0.259
MA0041.1	MA0041.1	0.4
MA0042.1	MA0042.1	0.675
MA0043.1	MA0043.1	0.00809
MA0046.1	MA0046.1	0.0457
MA0047.2	MA0047.2	0.477
MA0048.1	MA0048.1	0.321
MA0050.1	MA0050.1	0.035
MA0051.1	MA0051.1	0.378
MA0052.1	MA0052.1	0.269
MA0055.1	MA0055.1	0.299
MA0057.1	MA0057.1	0.587
MA0058.1	MA0058.1	0.746
MA0059.1	MA0059.1	0.0369
MA0060.1	MA0060.1	9.33417e-7
MA0061.1	MA0061.1	0.976
MA0062.2	MA0062.2	0.0174
MA0065.2	MA0065.2	0.841
MA0066.1	MA0066.1	0.473
MA0067.1	MA0067.1	0.0175
MA0068.1	MA0068.1	0.0627
MA0069.1	MA0069.1	0.226
MA0070.1	MA0070.1	0.386
MA0071.1	MA0071.1	0.566
MA0072.1	MA0072.1	0.56
MA0073.1	MA0073.1	0.904
MA0074.1	MA0074.1	0.554
MA0076.1	MA0076.1	0.937
MA0077.1	MA0077.1	0.273
MA0078.1	MA0078.1	0.747
MA0079.2	MA0079.2	0.0857
MA0080.2	MA0080.2	8.92513e-7
MA0081.1	MA0081.1	0.034
MA0083.1	MA0083.1	0.00905
MA0084.1	MA0084.1	0.452
MA0087.1	MA0087.1	0.804
MA0088.1	MA0088.1	0.13
MA0090.1	MA0090.1	0.101
MA0091.1	MA0091.1	0.0067
MA0092.1	MA0092.1	0.112
MA0093.1	MA0093.1	0.811
MA0099.2	MA0099.2	1.17139e-4
MA0100.1	MA0100.1	0.848
MA0101.1	MA0101.1	0.085
MA0102.2	MA0102.2	0.788
MA0103.1	MA0103.1	0.0015
MA0104.2	MA0104.2	0.345
MA0105.1	MA0105.1	0.0106
MA0106.1	MA0106.1	0.00682
MA0107.1	MA0107.1	0.0217
MA0108.2	MA0108.2	0.863
MA0111.1	MA0111.1	0.98
MA0112.2	MA0112.2	0.00129
MA0113.1	MA0113.1	0.185
MA0114.1	MA0114.1	0.79
MA0115.1	MA0115.1	0.416
MA0116.1	MA0116.1	0.00194
MA0117.1	MA0117.1	0.929
MA0119.1	MA0119.1	0.0125
MA0122.1	MA0122.1	0.477
MA0124.1	MA0124.1	0.29
MA0125.1	MA0125.1	0.245
MA0131.1	MA0131.1	0.75
MA0135.1	MA0135.1	0.0507
MA0136.1	MA0136.1	9.15019e-6
MA0137.2	MA0137.2	0.174
MA0138.2	MA0138.2	0.803
MA0139.1	MA0139.1	0.672
MA0140.1	MA0140.1	0.464
MA0141.1	MA0141.1	0.244
MA0142.1	MA0142.1	0.767
MA0143.1	MA0143.1	0.285
MA0144.1	MA0144.1	0.184
MA0145.1	MA0145.1	0.161
MA0146.1	MA0146.1	0.957
MA0147.1	MA0147.1	0.12
MA0148.1	MA0148.1	0.75
MA0149.1	MA0149.1	0.698
MA0150.1	MA0150.1	0.225
MA0152.1	MA0152.1	0.00112
MA0153.1	MA0153.1	0.982
MA0154.1	MA0154.1	0.0881
MA0155.1	MA0155.1	0.704
MA0156.1	MA0156.1	0.00202
MA0157.1	MA0157.1	0.745
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.46
MA0162.1	MA0162.1	0.204
MA0163.1	MA0163.1	1.5394e-6
MA0164.1	MA0164.1	0.764
MA0258.1	MA0258.1	0.293
MA0259.1	MA0259.1	0.266

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12365

Novel motif	Logo	P-value
1	1	0.101
10	10	0.12
100	100	0.886
101	101	0.988
102	102	0.0192
103	103	0.141
104	104	0.804
105	105	0.225
106	106	0.861
107	107	0.84
108	108	0.653
109	109	0.378
11	11	0.143
110	110	0.0204
111	111	0.787
112	112	0.0364
113	113	0.035
114	114	0.0638
115	115	0.714
116	116	0.105
117	117	0.138
118	118	0.806
119	119	0.836
12	12	0.781
120	120	0.135
121	121	0.734
122	122	0.0155
123	123	0.00529
124	124	0.407
125	125	0.966
126	126	0.641
127	127	0.849
128	128	0.757
129	129	0.8
13	13	0.125
130	130	0.727
131	131	0.401
132	132	0.941
133	133	0.36
134	134	0.419
135	135	0.871
136	136	0.457
137	137	0.93
138	138	0.774
139	139	0.492
14	14	0.229
140	140	0.846
141	141	0.529
142	142	0.378
143	143	0.567
144	144	0.625
145	145	0.805
146	146	0.499
147	147	0.0367
148	148	0.516
149	149	0.0262
15	15	0.398
150	150	0.563
151	151	0.776
152	152	0.834
153	153	0.45
154	154	0.873
155	155	0.00704
156	156	0.672
157	157	0.855
158	158	0.00691
159	159	0.0865
16	16	0.00478
160	160	0.306
161	161	0.758
162	162	0.787
163	163	0.314
164	164	0.0261
165	165	0.622
166	166	0.0609
167	167	0.662
168	168	0.667
169	169	0.00828
17	17	0.55
18	18	0.0568
19	19	0.0334
2	2	0.394
20	20	0.266
21	21	0.187
22	22	0.213
23	23	0.272
24	24	0.705
25	25	0.817
26	26	0.213
27	27	0.267
28	28	0.254
29	29	0.0612
3	3	0.205
30	30	0.727
31	31	0.888
32	32	8.49958e-11
33	33	0.581
34	34	0.967
35	35	0.282
36	36	0.451
37	37	0.0601
38	38	0.889
39	39	0.161
4	4	0.307
40	40	0.572
41	41	0.987
42	42	0.713
43	43	0.207
44	44	0.672
45	45	0.858
46	46	0.122
47	47	0.581
48	48	0.471
49	49	0.787
5	5	0.466
50	50	0.555
51	51	0.482
52	52	0.87
53	53	0.0966
54	54	0.687
55	55	0.0748
56	56	0.999
57	57	0.741
58	58	0.728
59	59	0.117
6	6	0.146
60	60	0.733
61	61	0.922
62	62	0.3
63	63	0.319
64	64	0.657
65	65	0.501
66	66	0.721
67	67	0.598
68	68	0.644
69	69	0.532
7	7	0.569
70	70	0.228
71	71	0.00609
72	72	0.78
73	73	0.504
74	74	0.00781
75	75	0.139
76	76	0.674
77	77	0.0304
78	78	0.0915
79	79	0.0767
8	8	0.0101
80	80	0.869
81	81	0.277
82	82	0.308
83	83	0.677
84	84	0.782
85	85	0.229
86	86	0.37
87	87	0.352
88	88	0.489
89	89	0.0503
9	9	0.248
90	90	0.391
91	91	0.455
92	92	0.117
93	93	0.822
94	94	0.573
95	95	0.13
96	96	0.849
97	97	0.186
98	98	0.807
99	99	0.00827

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12365

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000270 mesenchymal precursor cell of adipose

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000270 (mesenchymal precursor cell of adipose)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005254
+|accession_numbers=CAGE;DRX008547;DRR009419;DRZ000844;DRZ002229;DRZ012194;DRZ013579
 |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.69!126.50!OSR1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.68!47.16!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.53!37.17!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.48!74.90!HIC1;;chr1:170633262..170633285,+!p3@PRRX1!1.44!30.51!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.41!24.97!EBF2;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.51!PRRX1;;chr3:12330560..12330579,+!p1@PPARG!1.35!24.41!PPARG;;chr15:67430351..67430366,+!p10@SMAD3!1.35!21.64!SMAD3;;chr2:239756739..239756755,+!p2@TWIST2!1.23!27.19!TWIST2;;chr4:174451370..174451387,-!p1@HAND2!1.19!14.42!HAND2;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.87!HOXC8;;chr19:45971246..45971265,+!p1@FOSB!1.15!243.00!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.19!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.12!12.21!EBF3;;chr2:239756671..239756732,+!p1@TWIST2!1.11!38.28!TWIST2;;chr2:102091144..102091183,-!p2@RFX8!1.08!11.10!RFX8;;chr12:54380036..54380091,+!p4@HOXC10!1.08!11.10!HOXC10;;chr12:66218598..66218645,+!p2@HMGA2!1.05!48.27!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.05!13.32!NFATC2;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!51.60!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.04!24.97!EBF1;;chr3:21792585..21792625,-!p2@ZNF385D!1.04!11.10!ZNF385D;;chr17:46675420..46675465,-!p3@HOXB6!1.03!11.10!HOXB6;;chr7:19157248..19157268,-!p1@TWIST1!1.02!26.63!TWIST1;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.76!TSHZ2;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.43!PRRX1;;chr15:96874927..96874938,+!p8@NR2F2!1.00!19.42!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.53!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.00!9.99!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.88!HOXC9;;chr8:22550982..22550999,-!p1@EGR3!0.97!24.41!EGR3;;chr17:1958388..1958404,+!p1@HIC1!0.96!53.82!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.96!37.73!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.94!7.77!EMX2;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.77!HOXD8;;chr4:174450089..174450153,-!p2@HAND2!0.94!7.77!HAND2;;chr5:2751762..2751784,-!p1@IRX2!0.94!7.77!IRX2;;chr1:158979872..158979898,+!p3@IFI16!0.93!23.86!IFI16;;chr3:141121847..141121868,+!p5@ZBTB38!0.91!11.10!ZBTB38;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.20!TWIST1;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.66!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.88!6.66!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.88!6.66!HOXC10;;chr1:158979792..158979814,+!p2@IFI16!0.87!64.36!IFI16;;chr15:96874145..96874166,+!p7@NR2F2!0.87!12.76!NR2F2;;chr8:49833948..49833973,-!p2@SNAI2!0.85!41.06!SNAI2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.10!HOXC5;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.10!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.84!12.76!EGR2;;chr11:65686802..65686818,+!p6@DRAP1!0.84!10.54!DRAP1;;chr19:50432453..50432468,+!p1@ATF5!0.83!349.53!ATF5;;chr10:31610110..31610159,+!p2@ZEB1!0.82!5.55!ZEB1;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.55!HOXC9;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.55!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.82!5.55!HOXB8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.55!HOXA9;;chr2:119604456..119604501,-!p2@EN1!0.82!5.55!EN1;;chr3:21792682..21792720,-!p1@ZNF385D!0.82!5.55!ZNF385D;;chr12:53614115..53614154,-!p1@RARG!0.81!31.07!RARG;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.99!ZFP106;;chr1:158985493..158985535,+!p4@IFI16!0.80!8.32!IFI16;;chr14:75745523..75745537,+!p1@FOS!0.79!675.75!FOS;;chr21:36260773..36260804,-!p7@RUNX1!0.79!7.21!RUNX1;;chr11:65686732..65686756,+!p2@DRAP1!0.78!23.30!DRAP1;;chr1:170633245..170633256,+!p14@PRRX1!0.78!4.99!PRRX1;;chr2:102091590..102091601,-!p5@RFX8!0.78!4.99!RFX8;;chr3:141087454..141087465,+!p19@ZBTB38!0.78!4.99!ZBTB38;;chr3:141121820..141121838,+!p9@ZBTB38!0.78!4.99!ZBTB38;;chr15:96873984..96873999,+!p3@NR2F2!0.77!39.39!NR2F2;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.30!ETV1;;chr9:132427972..132428056,+!p1@PRRX2!0.77!6.66!PRRX2;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.10!BNC2;;chr9:110252035..110252057,-!p1@KLF4!0.76!84.33!KLF4;;chr19:31840130..31840160,-!p2@TSHZ3!0.76!7.77!TSHZ3;;chr2:74730430..74730451,-!p1@LBX2!0.74!7.77!LBX2;;chr2:102091566..102091581,-!p1@RFX8!0.74!4.44!RFX8;;chr1:170632439..170632465,+!p11@PRRX1!0.74!4.44!PRRX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.74!4.44!TSHZ2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.42!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.49!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.73!6.66!MSC;;chr7:113726357..113726443,+!p1@FOXP2!0.72!7.77!FOXP2;;chr21:36260295..36260310,-!p3@RUNX1!0.72!7.21!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.38!HIF1A;;chr14:24837368..24837401,+!p1@NFATC4!0.69!9.99!NFATC4;;chr1:158979851..158979865,+!p5@IFI16!0.69!9.43!IFI16;;chr1:170633225..170633230,+!p25@PRRX1!0.69!3.88!PRRX1;;chr19:31840168..31840186,-!p6@TSHZ3!0.69!3.88!TSHZ3;;chr2:177001290..177001315,+!p1@HOXD3!0.69!3.88!HOXD3;;chr3:141121871..141121885,+!p13@ZBTB38!0.69!3.88!ZBTB38;;chr8:93074803..93074845,-!p1@RUNX1T1!0.69!3.88!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.69!3.88!RUNX1T1;;chr9:16705069..16705086,-!p3@BNC2!0.69!3.88!BNC2;;chr11:65687222..65687240,+!p7@DRAP1!0.68!4.99!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.67!18.31!ZBTB20;;chr9:14314106..14314119,-!p5@NFIB!0.67!7.21!NFIB;;chr6:144329384..144329405,-!p1@PLAGL1!0.66!48.27!PLAGL1;;chr17:46622070..46622109,-!p1@HOXB2!0.66!8.88!HOXB2;;chr3:141105705..141105770,+!p4@ZBTB38!0.66!4.44!ZBTB38;;chr1:164528384..164528409,+!p3@PBX1!0.65!12.21!PBX1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.66!GATA6;;chr18:22932080..22932170,-!p1@ZNF521!0.64!16.64!ZNF521;;chr7:44143978..44143989,+!p2@AEBP1!0.64!6.66!AEBP1;;chr8:99956662..99956684,+!p1@OSR2!0.64!5.55!OSR2;;chr6:134210243..134210257,+!p1@TCF21!0.64!3.33!TCF21;;chr7:27183291..27183324,-!p1@HOXA5!0.64!3.33!HOXA5;;chr7:27205106..27205134,-!p2@HOXA9!0.64!3.33!HOXA9;;chr8:102216978..102217003,-!p4@ZNF706!0.64!3.33!ZNF706;;chr15:67430381..67430396,+!p21@SMAD3!0.64!3.33!SMAD3;;chr19:13135386..13135435,+!p4@NFIX!0.64!3.33!NFIX;;chr1:44513995..44514031,+!p1@KLF17!0.64!3.33!KLF17;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.33!RFX8;;chr2:19558327..19558334,-!p2@OSR1!0.64!3.33!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.64!3.33!SIX2;;chr12:54422217..54422239,+!p3@HOXC6!0.64!3.33!HOXC6;;chr12:85673977..85674015,+!p1@ALX1!0.64!3.33!ALX1;;chr9:16870710..16870763,-!p1@BNC2!0.63!6.10!BNC2;;chr17:46688334..46688385,-!p1@HOXB7!0.63!4.99!HOXB7;;chr7:44143925..44143970,+!p1@AEBP1!0.62!84.33!AEBP1;;chr1:158969752..158969780,+!p6@IFI16!0.62!6.10!IFI16;;chr19:13134772..13134822,+!p2@NFIX!0.62!4.99!NFIX;;chr8:128748308..128748324,+!p2@MYC!0.61!102.08!MYC;;chr12:66218255..66218304,+!p3@HMGA2!0.61!9.43!HMGA2;;chr15:37392576..37392589,-!p12@MEIS2!0.61!3.88!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!0.60!16.09!MEIS2;;chr5:133450365..133450444,+!p1@TCF7!0.60!16.09!TCF7;;chr10:114710244..114710257,+!p3@TCF7L2!0.60!9.43!TCF7L2;;chr1:23696308..23696339,-!p2@ZNF436!0.60!7.21!ZNF436;;chr19:50435736..50435781,+!p3@ATF5!0.60!4.44!ATF5;;chr2:66662281..66662308,+!p1@MEIS1!0.59!11.65!MEIS1;;chr7:137686763..137686784,-!p5@CREB3L2!0.59!5.55!CREB3L2;;chr15:37391588..37391604,-!p11@MEIS2!0.59!3.88!MEIS2;;chr1:59249732..59249749,-!p2@JUN!0.58!41.61!JUN;;chr21:36260343..36260402,-!p6@RUNX1!0.58!4.99!RUNX1;;chr19:3366625..3366629,+!p4@NFIC!0.58!4.44!NFIC;;chr14:95236440..95236465,-!p1@GSC!0.58!2.77!GSC;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.77!ZNF668;;chr17:46621146..46621180,-!p10@HOXB2!0.58!2.77!HOXB2;;chr17:46621279..46621297,-!p13@HOXB2!0.58!2.77!HOXB2;;chr19:13135582..13135600,+!p3@NFIX!0.58!2.77!NFIX;;chr2:119605214..119605230,-!p1@EN1!0.58!2.77!EN1;;chr2:8819364..8819390,+!p2@ID2!0.58!2.77!ID2;;chr11:46299443..46299459,+!p4@CREB3L1!0.58!2.77!CREB3L1;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.77!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.58!2.77!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.58!2.77!PRRX1;;chr7:27183263..27183284,-!p2@HOXA5!0.58!2.77!HOXA5;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.77!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.58!2.77!HOXA7;;chr8:22550530..22550609,-!p2@EGR3!0.58!2.77!EGR3;;chr1:8938709..8938720,-!p3@ENO1!0.57!165.33!ENO1;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.86!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.57!9.99!GATA6;;chr3:107244229..107244254,+!p3@BBX!0.57!4.99!BBX;;chr17:46621101..46621143,-!p7@HOXB2!0.57!3.88!HOXB2;;chr15:96874012..96874042,+!p2@NR2F2!0.56!29.40!NR2F2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.64!HIF1A;;chr15:96869114..96869160,+!p11@NR2F2!0.56!3.88!NR2F2;;chr6:32095523..32095564,-!p2@ATF6B!0.56!3.88!ATF6B;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.33!TBX18;;chr11:120107344..120107351,+!p1@POU2F3!0.56!3.33!POU2F3;;chr9:14314566..14314618,-!p1@NFIB!0.55!38.84!NFIB;;chr17:59477233..59477263,+!p1@TBX2!0.55!9.43!TBX2;;chr12:10875351..10875422,-!p4@CSDA!0.55!5.55!CSDA;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.55!HOXA1;;chr15:37390374..37390422,-!p9@MEIS2!0.55!3.33!MEIS2;;chr7:28725740..28725778,+!p1@CREB5!0.54!27.74!CREB5;;chr12:115121962..115121987,-!p1@TBX3!0.54!26.08!TBX3;;chr14:45722287..45722308,-!p2@MIS18BP1!0.54!7.77!MIS18BP1;;chr12:80085255..80085284,-!p9@PAWR!0.54!3.88!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.54!3.88!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.54!3.88!GATA6;;chr10:63809106..63809127,+!p1@ARID5B!0.53!41.06!ARID5B;;chr17:46621937..46621966,-!p2@HOXB2!0.53!7.77!HOXB2;;chr1:151032782..151032801,+!p4@MLLT11!0.53!5.55!MLLT11;;chr15:96869255..96869291,+!p6@NR2F2!0.53!4.99!NR2F2;;chr18:3448455..3448480,+!p5@TGIF1!0.53!4.99!TGIF1;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.88!HMGA2;;chr14:75746722..75746777,+!p2@FOS!0.53!3.33!FOS;;chr15:96873861..96873872,+!p9@NR2F2!0.52!5.55!NR2F2;;chr17:46655704..46655718,-!p2@HOXB4!0.52!3.88!HOXB4;;chr6:42419316..42419340,-!p4@TRERF1!0.52!3.88!TRERF1;;chr7:42276787..42276815,-!p1@GLI3!0.51!7.21!GLI3;;chr3:12329397..12329433,+!p2@PPARG!0.51!6.10!PPARG;;chr16:79633894..79633954,-!p3@MAF!0.51!4.99!MAF;;chr18:52989081..52989117,-!p7@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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor3.CNhs12365.11749-123G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor3.CNhs12365.11749-123G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor3.CNhs12365.11749-123G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor3.CNhs12365.11749-123G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor3.CNhs12365.11749-123G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11749-123G3
 |is_a=EFO:0002091;;FF:0000270
 |is_obsolete=
+|library_id=CNhs12365
+|library_id_phase_based=2:CNhs12365
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11749
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11749
 |name=mesenchymal precursor cell - adipose, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12365,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11749-123G3;search_select_hide=table117:FF:11749-123G3
 }}

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FF:11749-123G3: Difference between revisions

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Latest revision as of 18:17, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0