FF:12238-129G6: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	chorionic membrane cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12504
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	chorion
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Hiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004697

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12504		CAGE		DRX008540		DRR009412

Accession ID Hg19

Library id		BAM		CTSS
CNhs12504		DRZ000837		DRZ002222

Accession ID Hg38

Library id		BAM		CTSS
CNhs12504		DRZ012187		DRZ013572

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.298
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.128
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.357
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0645
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.109
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.337
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0902
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.138
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.39
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.12
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.12
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.546
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.414
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.414
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.385
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.24
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.12
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.55
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.323
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.12
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.107
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0.12
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.886
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.292
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.12
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.214
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	1.096
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.126
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0678
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.037
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	1.037
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.12
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.622
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00914
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.606
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12504

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.191
MA0003.1	MA0003.1	0.375
MA0004.1	MA0004.1	0.584
MA0006.1	MA0006.1	0.0215
MA0007.1	MA0007.1	0.276
MA0009.1	MA0009.1	0.69
MA0014.1	MA0014.1	0.163
MA0017.1	MA0017.1	0.644
MA0018.2	MA0018.2	0.916
MA0019.1	MA0019.1	0.0673
MA0024.1	MA0024.1	0.0012
MA0025.1	MA0025.1	0.845
MA0027.1	MA0027.1	0.895
MA0028.1	MA0028.1	0.0216
MA0029.1	MA0029.1	0.241
MA0030.1	MA0030.1	0.439
MA0031.1	MA0031.1	0.0082
MA0035.2	MA0035.2	0.119
MA0038.1	MA0038.1	0.587
MA0039.2	MA0039.2	0.0014
MA0040.1	MA0040.1	0.988
MA0041.1	MA0041.1	0.64
MA0042.1	MA0042.1	0.858
MA0043.1	MA0043.1	0.516
MA0046.1	MA0046.1	0.331
MA0047.2	MA0047.2	0.0477
MA0048.1	MA0048.1	0.272
MA0050.1	MA0050.1	0.221
MA0051.1	MA0051.1	0.0575
MA0052.1	MA0052.1	0.63
MA0055.1	MA0055.1	0.967
MA0057.1	MA0057.1	0.603
MA0058.1	MA0058.1	0.604
MA0059.1	MA0059.1	0.189
MA0060.1	MA0060.1	0.185
MA0061.1	MA0061.1	0.636
MA0062.2	MA0062.2	2.65394e-4
MA0065.2	MA0065.2	0.423
MA0066.1	MA0066.1	0.254
MA0067.1	MA0067.1	0.169
MA0068.1	MA0068.1	0.00178
MA0069.1	MA0069.1	0.845
MA0070.1	MA0070.1	0.654
MA0071.1	MA0071.1	0.758
MA0072.1	MA0072.1	0.732
MA0073.1	MA0073.1	0.767
MA0074.1	MA0074.1	0.658
MA0076.1	MA0076.1	0.00191
MA0077.1	MA0077.1	0.678
MA0078.1	MA0078.1	0.834
MA0079.2	MA0079.2	0.462
MA0080.2	MA0080.2	0.00278
MA0081.1	MA0081.1	0.0535
MA0083.1	MA0083.1	0.0227
MA0084.1	MA0084.1	0.815
MA0087.1	MA0087.1	0.984
MA0088.1	MA0088.1	0.133
MA0090.1	MA0090.1	4.85758e-8
MA0091.1	MA0091.1	0.951
MA0092.1	MA0092.1	0.157
MA0093.1	MA0093.1	0.528
MA0099.2	MA0099.2	3.39193e-14
MA0100.1	MA0100.1	0.231
MA0101.1	MA0101.1	0.904
MA0102.2	MA0102.2	0.882
MA0103.1	MA0103.1	0.00516
MA0104.2	MA0104.2	0.0732
MA0105.1	MA0105.1	0.957
MA0106.1	MA0106.1	0.485
MA0107.1	MA0107.1	0.397
MA0108.2	MA0108.2	3.03981e-20
MA0111.1	MA0111.1	0.903
MA0112.2	MA0112.2	0.12
MA0113.1	MA0113.1	0.0306
MA0114.1	MA0114.1	0.213
MA0115.1	MA0115.1	0.274
MA0116.1	MA0116.1	0.597
MA0117.1	MA0117.1	0.676
MA0119.1	MA0119.1	0.889
MA0122.1	MA0122.1	0.157
MA0124.1	MA0124.1	0.607
MA0125.1	MA0125.1	0.82
MA0131.1	MA0131.1	0.645
MA0135.1	MA0135.1	0.643
MA0136.1	MA0136.1	6.35747e-4
MA0137.2	MA0137.2	0.716
MA0138.2	MA0138.2	0.862
MA0139.1	MA0139.1	0.824
MA0140.1	MA0140.1	0.81
MA0141.1	MA0141.1	0.166
MA0142.1	MA0142.1	0.918
MA0143.1	MA0143.1	0.624
MA0144.1	MA0144.1	0.0269
MA0145.1	MA0145.1	0.0199
MA0146.1	MA0146.1	0.204
MA0147.1	MA0147.1	0.124
MA0148.1	MA0148.1	0.211
MA0149.1	MA0149.1	0.748
MA0150.1	MA0150.1	0.198
MA0152.1	MA0152.1	0.14
MA0153.1	MA0153.1	0.916
MA0154.1	MA0154.1	0.218
MA0155.1	MA0155.1	0.491
MA0156.1	MA0156.1	4.46787e-4
MA0157.1	MA0157.1	0.0945
MA0159.1	MA0159.1	0.238
MA0160.1	MA0160.1	0.531
MA0162.1	MA0162.1	0.385
MA0163.1	MA0163.1	0.838
MA0164.1	MA0164.1	0.575
MA0258.1	MA0258.1	0.958
MA0259.1	MA0259.1	0.637

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12504

Novel motif	Logo	P-value
1	1	0.868
10	10	0.793
100	100	0.727
101	101	0.24
102	102	0.686
103	103	0.323
104	104	0.801
105	105	0.188
106	106	0.0023
107	107	0.0101
108	108	0.0511
109	109	0.00939
11	11	0.795
110	110	0.267
111	111	0.225
112	112	0.33
113	113	9.02951e-4
114	114	0.928
115	115	0.87
116	116	0.817
117	117	0.269
118	118	0.074
119	119	0.451
12	12	0.629
120	120	0.206
121	121	0.673
122	122	0.908
123	123	0.0146
124	124	0.0374
125	125	0.878
126	126	0.193
127	127	0.395
128	128	0.53
129	129	0.764
13	13	0.21
130	130	0.392
131	131	0.389
132	132	0.384
133	133	0.114
134	134	0.153
135	135	0.632
136	136	0.019
137	137	0.457
138	138	0.989
139	139	0.842
14	14	0.747
140	140	0.522
141	141	0.377
142	142	0.609
143	143	0.462
144	144	0.541
145	145	0.685
146	146	0.434
147	147	0.858
148	148	0.892
149	149	0.392
15	15	0.915
150	150	0.11
151	151	0.188
152	152	0.0102
153	153	0.63
154	154	0.722
155	155	0.131
156	156	0.874
157	157	0.739
158	158	0.174
159	159	0.61
16	16	0.0381
160	160	0.355
161	161	0.846
162	162	0.721
163	163	0.101
164	164	0.608
165	165	0.589
166	166	0.64
167	167	0.161
168	168	0.932
169	169	0.0849
17	17	0.161
18	18	0.887
19	19	0.139
2	2	0.192
20	20	0.704
21	21	0.363
22	22	0.183
23	23	0.0536
24	24	0.946
25	25	0.8
26	26	0.451
27	27	0.785
28	28	0.94
29	29	0.368
3	3	0.616
30	30	0.107
31	31	0.702
32	32	0.0759
33	33	0.529
34	34	0.896
35	35	0.272
36	36	0.606
37	37	0.254
38	38	0.747
39	39	0.155
4	4	0.522
40	40	0.131
41	41	0.465
42	42	0.736
43	43	0.476
44	44	0.595
45	45	0.0352
46	46	0.859
47	47	0.393
48	48	0.979
49	49	0.794
5	5	0.855
50	50	0.324
51	51	0.917
52	52	0.127
53	53	0.295
54	54	0.953
55	55	0.36
56	56	0.647
57	57	0.714
58	58	0.852
59	59	0.354
6	6	0.996
60	60	0.144
61	61	0.376
62	62	0.954
63	63	0.611
64	64	0.77
65	65	0.409
66	66	0.406
67	67	0.688
68	68	0.536
69	69	0.308
7	7	0.371
70	70	0.203
71	71	0.971
72	72	0.287
73	73	0.015
74	74	0.463
75	75	0.364
76	76	0.734
77	77	0.0283
78	78	0.533
79	79	0.71
8	8	0.766
80	80	0.802
81	81	0.578
82	82	0.767
83	83	0.884
84	84	0.152
85	85	0.0472
86	86	0.943
87	87	0.655
88	88	0.566
89	89	0.577
9	9	0.677
90	90	0.448
91	91	0.715
92	92	0.906
93	93	0.825
94	94	0.894
95	95	0.144
96	96	0.727
97	97	0.143
98	98	0.95
99	99	0.98

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12504

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000038 human chorionic membrane stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004697
-|accession_numbers=CAGE;DRX008540;DRR009412;DRZ000837;DRZ002222
+|accession_numbers=CAGE;DRX008540;DRR009412;DRZ000837;DRZ002222;DRZ012187;DRZ013572
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.39!4236.34!FOSB;;chr3:12330560..12330579,+!p1@PPARG!2.11!146.10!PPARG;;chr6:53013620..53013644,-!p1@GCM1!2.04!107.50!GCM1;;chr10:8096772..8096787,+!p2@GATA3!1.97!108.46!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.96!89.32!ZBED2;;chr14:75745523..75745537,+!p1@FOS!1.95!9843.10!FOS;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.77!PEG3;;chr9:110252035..110252057,-!p1@KLF4!1.90!1177.11!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.42!GATA3;;chr11:2291814..2291825,-!p2@ASCL2!1.88!74.97!ASCL2;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.86!HAND2;;chr1:6479968..6479986,-!p1@HES2!1.82!64.44!HES2;;chr14:75746722..75746777,+!p2@FOS!1.81!80.39!FOS;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.61!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.19!ELF3;;chr2:46524897..46524911,+!p2@EPAS1!1.72!137.49!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.72!65.40!TFAP2C;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.72!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.71!50.40!IRX2;;chr3:128212033..128212051,-!p1@GATA2!1.68!46.57!GATA2;;chr1:212782094..212782109,+!p1@ATF3!1.63!1062.27!ATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.60!156.31!CEBPA;;chr9:77112244..77112262,+!p1@RORB!1.60!43.70!RORB;;chr17:48072574..48072597,-!p1@DLX3!1.59!37.64!DLX3;;chr8:99956662..99956684,+!p1@OSR2!1.52!49.13!OSR2;;chr5:2751785..2751808,-!p2@IRX2!1.50!30.31!IRX2;;chr17:7493405..7493419,-!p1@SOX15!1.49!29.67!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.48!295.40!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.48!32.86!IRF6;;chr7:96654133..96654150,-!p1@DLX5!1.48!29.35!DLX5;;chrX:70316005..70316034,+!p2@FOXO4!1.46!50.08!FOXO4;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!44.02!TFAP2A;;chr11:12696102..12696113,+!p5@TEAD1!1.42!25.52!TEAD1;;chr19:45977697..45977713,+!p4@FOSB!1.42!25.52!FOSB;;chr7:1577899..1577943,+!p3@MAFK!1.37!22.65!MAFK;;chr10:8095593..8095625,+!p3@GATA3!1.35!25.20!GATA3;;chr3:128206762..128206781,-!p2@GATA2!1.34!126.96!GATA2;;chr20:39317868..39317884,-!p1@MAFB!1.33!233.19!MAFB;;chr6:19837592..19837621,+!p1@ID4!1.30!113.25!ID4;;chr8:135708787..135708805,-!p2@ZFAT!1.30!19.14!ZFAT;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.33!TFAP2A;;chr19:929027..929051,+!p4@ARID3A!1.28!18.18!ARID3A;;chr6:10419884..10419898,-!p11@TFAP2A!1.28!17.86!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!1.27!17.55!ZNF114;;chr11:65554528..65554546,+!p1@OVOL1!1.26!17.23!OVOL1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.25!848.86!NFKBIZ;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.59!TFAP2A;;chr6:53013605..53013616,-!p2@GCM1!1.25!16.59!GCM1;;chr10:8097321..8097348,+!p4@GATA3!1.24!16.27!GATA3;;chr14:75747250..75747267,+!p5@FOS!1.24!16.27!FOS;;chr2:46612891..46612907,+!p10@EPAS1!1.24!16.27!EPAS1;;chr5:153857778..153857794,-!p1@HAND1!1.22!15.63!HAND1;;chr5:137801160..137801176,+!p1@EGR1!1.21!1466.77!EGR1;;chr12:52445218..52445237,+!p1@NR4A1!1.21!190.76!NR4A1;;chr4:87857474..87857489,+!p7@AFF1!1.20!25.52!AFF1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.99!GRHL2;;chr1:40367668..40367684,-!p2@MYCL1!1.20!14.99!MYCL1;;chr16:31076332..31076388,-!p3@ZNF668!1.20!14.67!ZNF668;;chr1:59249732..59249749,-!p2@JUN!1.19!172.26!JUN;;chr11:2292226..2292270,-!p1@ASCL2!1.19!14.36!ASCL2;;chrX:70316101..70316112,+!p5@FOXO4!1.19!14.36!FOXO4;;chr6:10419768..10419819,-!p6@TFAP2A!1.16!13.40!TFAP2A;;chr13:45010939..45011033,-!p1@TSC22D1!1.15!845.67!TSC22D1;;chrX:56258844..56258882,+!p1@KLF8!1.14!17.55!KLF8;;chr3:141719209..141719215,-!p10@TFDP2!1.14!12.76!TFDP2;;chr16:67881534..67881549,-!p4@CENPT!1.14!12.76!CENPT;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.24!MAFF;;chr5:137804484..137804498,+!p2@EGR1!1.12!49.45!EGR1;;chr2:46524878..46524891,+!p3@EPAS1!1.12!21.69!EPAS1;;chr11:12696071..12696086,+!p3@TEAD1!1.12!16.27!TEAD1;;chrX:70316072..70316085,+!p4@FOXO4!1.12!12.12!FOXO4;;chr8:102504979..102505010,+!p2@GRHL2!1.12!12.12!GRHL2;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.80!IRF8;;chr19:12902289..12902307,+!p1@JUNB!1.10!2657.60!JUNB;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.90!OSR1;;chr14:75747296..75747329,+!p4@FOS!1.10!11.48!FOS;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.12!MXD1;;chr14:75746781..75746799,+!p6@FOS!1.09!11.17!FOS;;chrY:2803415..2803468,+!p1@ZFY!1.09!11.17!ZFY;;chr3:39195037..39195069,-!p2@CSRNP1!1.08!68.90!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.08!13.08!CREB5;;chr19:45974032..45974054,+!p9@FOSB!1.07!10.85!FOSB;;chr14:35873947..35873965,-!p1@NFKBIA!1.05!658.42!NFKBIA;;chr1:59249688..59249703,-!p3@JUN!1.05!62.21!JUN;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.21!PLEK;;chr16:67881588..67881612,-!p2@CENPT!1.04!13.72!CENPT;;chr11:65554563..65554576,+!p2@OVOL1!1.04!9.89!OVOL1;;chr19:45972203..45972226,+!p5@FOSB!1.04!9.89!FOSB;;chr19:45977993..45978005,+!p6@FOSB!1.04!9.89!FOSB;;chr3:32023232..32023273,+!p1@ZNF860!1.03!14.04!ZNF860;;chr2:10091815..10091864,+!p1@GRHL1!1.03!13.08!GRHL1;;chr9:110251836..110251887,-!p4@KLF4!1.03!13.08!KLF4;;chr1:59249707..59249727,-!p1@JUN!1.02!403.54!JUN;;chr6:28048343..28048354,+!p1@ZNF165!1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002541;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.ctss.bed.gz
 |id=FF:12238-129G6
 |is_a=EFO:0002091;;FF:0000038
 |is_obsolete=
 |library_id=CNhs12504
-|library_id_phase_based=1:CNhs12504
+|library_id_phase_based=2:CNhs12504
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12238
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12238
 |name=chorionic membrane cells, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12504,LSID918,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12238-129G6;search_select_hide=table117:FF:12238-129G6
 }}

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FF:12238-129G6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0