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Difference between revisions of "FF:12642-134G5"

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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|data_phase=1
+
|data_phase=2
|datafreeze_phase=1
+
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.91!80.68!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.72!51.10!SIM2;;chr2:68592406..68592424,+!p1@PLEK!1.47!28.24!PLEK;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.60!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.40!32.27!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!1.40!24.20!FOXG1;;chr12:66218836..66218888,+!p1@HMGA2!1.36!199.01!HMGA2;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.83!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.28!82.02!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.81!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.25!16.81!IRF8;;chr11:34642612..34642646,+!p1@EHF!1.23!16.14!EHF;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.48!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.19!37.65!HIC1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.46!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.13!47.74!HHEX;;chr8:11561684..11561751,+!p1@GATA4!1.12!12.10!GATA4;;chr3:141087393..141087426,+!p3@ZBTB38!1.08!44.37!ZBTB38;;chr12:66218904..66218913,+!p11@HMGA2!1.07!10.76!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!1.06!12.77!ZBTB38;;chr16:86544113..86544145,+!p1@FOXF1!1.05!12.77!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.10!CREB3L1;;chr1:221052776..221052799,+!p1@HLX!1.03!17.48!HLX;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.76!TCF4;;chr11:47279504..47279563,+!p1@NR1H3!1.01!21.51!NR1H3;;chr17:46622205..46622218,-!p3@HOXB2!0.99!10.08!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.97!22.86!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.12!CREB3L1;;chr12:66358080..66358094,+!p15@HMGA2!0.96!8.07!HMGA2;;chr21:38071403..38071428,+!p2@SIM2!0.96!8.07!SIM2;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.22!TWIST2;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.63!FOXD1;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.40!TCF21;;chr8:55370720..55370733,+!p2@SOX17!0.92!7.40!SOX17;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.40!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.40!PRRX1;;chr2:66662281..66662308,+!p1@MEIS1!0.91!25.55!MEIS1;;chr6:45296048..45296082,+!p1@RUNX2!0.90!8.07!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.89!19.50!OSR1;;chr11:47400078..47400106,-!p1@SPI1!0.89!6.72!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!0.88!18.83!POU2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.66!MLLT11;;chr17:1958388..1958404,+!p1@HIC1!0.85!41.01!HIC1;;chr12:66218923..66218934,+!p14@HMGA2!0.85!6.05!HMGA2;;chr7:27183291..27183324,-!p1@HOXA5!0.85!6.05!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.05!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.85!6.05!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.05!ZFY;;chr2:46612334..46612349,+!p6@EPAS1!0.84!8.07!EPAS1;;chr1:158979792..158979814,+!p2@IFI16!0.83!59.16!IFI16;;chr17:41622765..41622821,-!p2@ETV4!0.82!8.74!ETV4;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.77!HOXB2;;chr19:42636625..42636632,-!p2@POU2F2!0.80!5.38!POU2F2;;chr12:66357214..66357233,+!p13@HMGA2!0.80!5.38!HMGA2;;chr7:27170359..27170381,-!p1@HOXA4!0.80!5.38!HOXA4;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.79!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.05!HOXB6;;chr2:101591314..101591333,+!p2@NPAS2!0.79!6.05!NPAS2;;chr15:57511609..57511651,+!p2@TCF12!0.78!8.74!TCF12;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.41!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.53!TOX2;;chr14:24837368..24837401,+!p1@NFATC4!0.76!12.10!NFATC4;;chr11:61520075..61520136,+!p1@C11orf9!0.76!10.76!C11orf9;;chr12:54778471..54778528,-!p1@ZNF385A!0.76!4.71!ZNF385A;;chr7:27183263..27183284,-!p2@HOXA5!0.76!4.71!HOXA5;;chr1:170632250..170632277,+!p7@PRRX1!0.76!4.71!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.76!4.71!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.71!RFX8;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.38!BNC1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.72!HOXB7;;chr6:21597765..21597779,+!p2@SOX4!0.73!38.99!SOX4;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.07!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.74!HMGA2;;chr1:151032922..151032951,+!p2@MLLT11!0.72!7.40!MLLT11;;chr17:46655704..46655718,-!p2@HOXB4!0.72!6.72!HOXB4;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.05!NR2F2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.71!336.83!TAX1BP3;;chr7:44143997..44144008,+!p3@AEBP1!0.71!5.38!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.70!61.85!ARID5B;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!12.10!TCF7L2;;chr1:151032782..151032801,+!p4@MLLT11!0.70!8.74!MLLT11;;chr1:170632051..170632081,+!p16@PRRX1!0.70!4.03!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.70!4.03!PRRX1;;chr21:38071462..38071474,+!p3@SIM2!0.70!4.03!SIM2;;chr16:86612320..86612394,+!p1@FOXL1!0.70!4.03!FOXL1;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.03!SOX11;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.03!KDM5D;;chr8:30890810..30890880,-!p1@PURG!0.70!4.03!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.70!4.03!SOX17;;chr7:137563945..137564001,-!p6@CREB3L2!0.69!10.08!CREB3L2;;chr19:13134457..13134462,+!p5@NFIX!0.69!7.40!NFIX;;chr12:125002739..125002756,-!p6@NCOR2!0.69!6.05!NCOR2;;chr1:221052840..221052875,+!p4@HLX!0.69!4.71!HLX;;chr15:96874244..96874259,+!p5@NR2F2!0.68!10.08!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.68!5.38!HOXB2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.67!52.44!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.67!51.10!FLI1;;chr14:62203595..62203676,+!p4@HIF1A!0.67!7.40!HIF1A;;chr7:137564014..137564042,-!p8@CREB3L2!0.67!6.72!CREB3L2;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.03!SHOX2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.83!DRAP1;;chr10:94449675..94449694,+!p2@HHEX!0.66!10.76!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.38!NR2F2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.36!HMGA1;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.55!SNAI2;;chr4:81118647..81118666,+!p1@PRDM8!0.64!4.71!PRDM8;;chr5:72743793..72743855,-!p4@FOXD1!0.64!4.03!FOXD1;;chr7:35293685..35293718,-!p1@TBX20!0.64!3.36!TBX20;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.36!RFX8;;chr2:66662396..66662407,+!p4@MEIS1!0.64!3.36!MEIS1;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.36!ZNF560;;chr1:170632583..170632590,+!p26@PRRX1!0.64!3.36!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.64!3.36!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.64!3.36!ETV4;;chr17:46655672..46655697,-!p3@HOXB4!0.64!3.36!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.64!3.36!HOXB3;;chr9:16705069..16705086,-!p3@BNC2!0.64!3.36!BNC2;;chr8:77593474..77593612,+!p1@ZFHX4!0.63!16.14!ZFHX4;;chr17:46622114..46622138,-!p4@HOXB2!0.63!5.38!HOXB2;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.39!AEBP1;;chr8:72756667..72756736,-!p2@MSC!0.62!5.38!MSC;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.50!ARID5B;;chr1:151032739..151032748,+!p6@MLLT11!0.61!4.03!MLLT11;;chr6:43140095..43140145,+!p5@SRF!0.61!4.03!SRF;;chr6:43140149..43140177,+!p8@SRF!0.61!3.36!SRF;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.22!ZMAT3;;chr7:19157248..19157268,-!p1@TWIST1!0.60!9.41!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!0.60!4.71!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.03!HMGA2;;chr10:63809013..63809041,+!p3@ARID5B!0.59!19.50!ARID5B;;chr6:106534192..106534224,+!p1@PRDM1!0.59!9.41!PRDM1;;chr3:170076223..170076242,+!p6@SKIL!0.59!3.36!SKIL;;chr9:35732647..35732678,+!p2@CREB3!0.58!18.83!CREB3;;chr3:71007344..71007348,-!p6@FOXP1!0.58!13.45!FOXP1;;chr10:35484804..35484902,+!p2@CREM!0.58!12.77!CREM;;chr12:53856284..53856299,+!p3@PCBP2!0.58!9.41!PCBP2;;chr12:96588368..96588394,+!p3@ELK3!0.58!8.74!ELK3;;chr14:35872453..35872485,-!p2@NFKBIA!0.58!8.07!NFKBIA;;chr7:137686763..137686784,-!p5@CREB3L2!0.58!5.38!CREB3L2;;chr1:221053049..221053075,+!p3@HLX!0.58!5.38!HLX;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.71!TSHZ3;;chr17:46622229..46622257,-!p6@HOXB2!0.58!3.36!HOXB2;;chr14:62162258..62162269,+!p2@HIF1A!0.57!32.27!HIF1A;;chr15:96869165..96869183,+!p20@NR2F2!0.57!2.69!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.57!2.69!ZNF668;;chr17:46682321..46682362,-!p1@HOXB6!0.57!2.69!HOXB6;;chr2:66662697..66662711,+!p8@MEIS1!0.57!2.69!MEIS1;;chr2:97203110..97203159,+!p4@ARID5A!0.57!2.69!ARID5A;;chr3:141087562..141087594,+!p12@ZBTB38!0.57!2.69!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!0.57!2.69!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.57!2.69!PRRX1;;chr1:43162358..43162369,+!p11@YBX1!0.57!2.69!YBX1;;chr21:38071488..38071502,+!p4@SIM2!0.57!2.69!SIM2;;chr5:139492456..139492489,+!p7@PURA!0.57!2.69!PURA;;chr7:27142290..27142310,-!p1@HOXA2!0.57!2.69!HOXA2;;chr7:27169801..27169844,-!p2@HOXA4!0.57!2.69!HOXA4;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.03!SMAD1;;chr15:77713095..77713113,+!p5@HMG20A!0.56!3.36!HMG20A;;chr1:158979872..158979898,+!p3@IFI16!0.55!9.41!IFI16;;chr1:151032833..151032850,+!p3@MLLT11!0.55!6.72!MLLT11;;chr6:21597600..21597664,+!p3@SOX4!0.55!4.71!SOX4;;chr15:96875041..96875052,+!p17@NR2F2!0.55!4.03!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.54!26.22!TBX3;;chr8:72756267..72756296,-!p4@MSC!0.54!4.03!MSC;;chr2:66662249..66662267,+!p2@MEIS1!0.53!11.43!MEIS1;;chr1:158985493..158985535,+!p4@IFI16!0.53!4.03!IFI16;;chr3:141087339..141087387,+!p2@ZBTB38!0.52!30.25!ZBTB38;;chr5:43067636..43067674,+!p6@ZNF131!0.52!3.36!ZNF131;;chr21:36260773..36260804,-!p7@RUNX1!0.52!3.36!RUNX1;;chr10:3819310..3819325,-!p5@KLF6!0.52!3.36!KLF6;;chr15:67418119..67418162,+!p5@SMAD3!0.52!2.69!SMAD3;;chr18:3452133..3452150,+!p19@TGIF1!0.52!2.69!TGIF1;;chr1:23696348..23696363,-!p4@ZNF436!0.52!2.69!ZNF436;;chr7:44143738..44143760,+!p4@AEBP1!0.52!2.69!AEBP1;;chr6:21593973..21593988,+!p1@SOX4!0.51!106.90!SOX4;;chr14:62162285..62162296,+!p3@HIF1A!0.51!14.79!HIF1A;;chr21:30671690..30671762,+!p2@BACH1!0.51!9.41!BACH1;;chr4:4861385..4861398,+!p1@MSX1!0.51!8.07!MSX1;;chr2:231280954..231280965,+!p2@SP100!0.51!4.71!SP100;;chr19:58373157..58373159,+!p4@ZNF587!0.51!4.71!ZNF587;;chr7:44143978..44143989,+!p2@AEBP1!0.51!4.71!AEBP1;;chrX:70504244..70504278,+!p4@NONO!0.51!4.03!NONO;;chr17:46687959..46688007,-!p2@HOXB7!0.51!3.36!HOXB7;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.14!NCOA4;;chr10:63809134..63809145,+!p6@ARID5B!0.50!6.05!ARID5B;;chr6:1312325..1312340,+!p1@FOXQ1!0.50!4.03!FOXQ1;;chr5:139494553..139494573,+!p6@PURA!0.50!3.36!PURA;;chr1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|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.91!80.68!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.72!51.10!SIM2;;chr2:68592406..68592424,+!p1@PLEK!1.47!28.24!PLEK;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.60!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.40!32.27!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!1.40!24.20!FOXG1;;chr12:66218836..66218888,+!p1@HMGA2!1.36!199.01!HMGA2;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.83!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.28!82.02!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.81!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.25!16.81!IRF8;;chr11:34642612..34642646,+!p1@EHF!1.23!16.14!EHF;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.48!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.19!37.65!HIC1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.46!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.13!47.74!HHEX;;chr8:11561684..11561751,+!p1@GATA4!1.12!12.10!GATA4;;chr3:141087393..141087426,+!p3@ZBTB38!1.08!44.37!ZBTB38;;chr12:66218904..66218913,+!p11@HMGA2!1.07!10.76!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!1.06!12.77!ZBTB38;;chr16:86544113..86544145,+!p1@FOXF1!1.05!12.77!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.10!CREB3L1;;chr1:221052776..221052799,+!p1@HLX!1.03!17.48!HLX;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.76!TCF4;;chr11:47279504..47279563,+!p1@NR1H3!1.01!21.51!NR1H3;;chr17:46622205..46622218,-!p3@HOXB2!0.99!10.08!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.97!22.86!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.12!CREB3L1;;chr12:66358080..66358094,+!p15@HMGA2!0.96!8.07!HMGA2;;chr21:38071403..38071428,+!p2@SIM2!0.96!8.07!SIM2;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.22!TWIST2;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.63!FOXD1;;chr6:134210243..134210257,+!p1@TCF21!0.92!7.40!TCF21;;chr8:55370720..55370733,+!p2@SOX17!0.92!7.40!SOX17;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.40!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.40!PRRX1;;chr2:66662281..66662308,+!p1@MEIS1!0.91!25.55!MEIS1;;chr6:45296048..45296082,+!p1@RUNX2!0.90!8.07!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.89!19.50!OSR1;;chr11:47400078..47400106,-!p1@SPI1!0.89!6.72!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!0.88!18.83!POU2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.86!78.66!MLLT11;;chr17:1958388..1958404,+!p1@HIC1!0.85!41.01!HIC1;;chr12:66218923..66218934,+!p14@HMGA2!0.85!6.05!HMGA2;;chr7:27183291..27183324,-!p1@HOXA5!0.85!6.05!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.05!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.85!6.05!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.05!ZFY;;chr2:46612334..46612349,+!p6@EPAS1!0.84!8.07!EPAS1;;chr1:158979792..158979814,+!p2@IFI16!0.83!59.16!IFI16;;chr17:41622765..41622821,-!p2@ETV4!0.82!8.74!ETV4;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.77!HOXB2;;chr19:42636625..42636632,-!p2@POU2F2!0.80!5.38!POU2F2;;chr12:66357214..66357233,+!p13@HMGA2!0.80!5.38!HMGA2;;chr7:27170359..27170381,-!p1@HOXA4!0.80!5.38!HOXA4;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.79!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.05!HOXB6;;chr2:101591314..101591333,+!p2@NPAS2!0.79!6.05!NPAS2;;chr15:57511609..57511651,+!p2@TCF12!0.78!8.74!TCF12;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.41!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.53!TOX2;;chr14:24837368..24837401,+!p1@NFATC4!0.76!12.10!NFATC4;;chr11:61520075..61520136,+!p1@C11orf9!0.76!10.76!C11orf9;;chr12:54778471..54778528,-!p1@ZNF385A!0.76!4.71!ZNF385A;;chr7:27183263..27183284,-!p2@HOXA5!0.76!4.71!HOXA5;;chr1:170632250..170632277,+!p7@PRRX1!0.76!4.71!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.76!4.71!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.71!RFX8;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.38!BNC1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.72!HOXB7;;chr6:21597765..21597779,+!p2@SOX4!0.73!38.99!SOX4;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.07!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.74!HMGA2;;chr1:151032922..151032951,+!p2@MLLT11!0.72!7.40!MLLT11;;chr17:46655704..46655718,-!p2@HOXB4!0.72!6.72!HOXB4;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.05!NR2F2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.71!336.83!TAX1BP3;;chr7:44143997..44144008,+!p3@AEBP1!0.71!5.38!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.70!61.85!ARID5B;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!12.10!TCF7L2;;chr1:151032782..151032801,+!p4@MLLT11!0.70!8.74!MLLT11;;chr1:170632051..170632081,+!p16@PRRX1!0.70!4.03!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.70!4.03!PRRX1;;chr21:38071462..38071474,+!p3@SIM2!0.70!4.03!SIM2;;chr16:86612320..86612394,+!p1@FOXL1!0.70!4.03!FOXL1;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.03!SOX11;;chrY:21906594..21906622,-!p1@KDM5D!0.70!4.03!KDM5D;;chr8:30890810..30890880,-!p1@PURG!0.70!4.03!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.70!4.03!SOX17;;chr7:137563945..137564001,-!p6@CREB3L2!0.69!10.08!CREB3L2;;chr19:13134457..13134462,+!p5@NFIX!0.69!7.40!NFIX;;chr12:125002739..125002756,-!p6@NCOR2!0.69!6.05!NCOR2;;chr1:221052840..221052875,+!p4@HLX!0.69!4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XG1!0.22!0.67!FOXG1;;chr14:29237009..29237049,+!p4@FOXG1!0.22!0.67!FOXG1;;chr14:33408493..33408525,+!p4@NPAS3!0.22!0.67!NPAS3;;chr14:35874077..35874091,-!p8@NFKBIA!0.22!0.67!NFKBIA;;chr14:69262916..69262929,-!p11@ZFP36L1!0.22!0.67!ZFP36L1;;chr14:99738059..99738086,-!p2@BCL11B!0.22!0.67!BCL11B;;chr15:31619140..31619152,+!p11@KLF13!0.22!0.67!KLF13;;chr15:31684643..31684660,+!p18@KLF13!0.22!0.67!KLF13;;chr15:66994718..66994729,+!p4@SMAD6!0.22!0.67!SMAD6;;chr15:83953373..83953386,-!p2@BNC1!0.22!0.67!BNC1;;chr15:90544182..90544195,+!p7@ZNF710!0.22!0.67!ZNF710;;chr15:90545434..90545449,+!p9@ZNF710!0.22!0.67!ZNF710;;chr15:96869394..96869405,+!p25@NR2F2!0.22!0.67!NR2F2;;chr15:96877425..96877441,+!p32@NR2F2!0.22!0.67!NR2F2;;chr16:51185172..51185197,-!p1@SALL1!0.22!0.67!SALL1;;chr16:51185318..51185348,-!p2@SALL1!0.22!0.67!SALL1;;chr16:54320280..54320291,-!p9@IRX3!0.22!0.67!IRX3;;chr16:67198633..67198671,+!p1@HSF4!0.22!0.67!HSF4;;chr16:86600870..86600921,+!p2@FOXC2!0.22!0.67!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.22!0.67!FOXC2;;chr17:17721569..17721574,-!p9@SREBF1!0.22!0.67!SREBF1;;chr17:17740823..17740833,-!p8@SREBF1!0.22!0.67!SREBF1;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.22!0.67!SEBOX;;chr17:36871943..36871947,+!p8@MLLT6!0.22!0.67!MLLT6;;chr17:40428334..40428345,-!p2@STAT5B!0.22!0.67!STAT5B;;chr17:40440359..40440386,+!p4@STAT5A!0.22!0.67!STAT5A;;chr17:40440446..40440464,+!p5@STAT5A!0.22!0.67!STAT5A;;chr17:41739036..41739040,-!p5@MEOX1!0.22!0.67!MEOX1;;chr17:42287802..42287806,-!p25@UBTF!0.22!0.67!UBTF;;chr17:46622143..46622152,-!p14@HOXB2!0.22!0.67!HOXB2;;chr17:46655566..46655577,-!p5@HOXB4!0.22!0.67!HOXB4;;chr17:46655578..46655589,-!p4@HOXB4!0.22!0.67!HOXB4;;chr17:46671154..46671167,-!p4@HOXB5!0.22!0.67!HOXB5;;chr17:46675344..46675355,-!p9@HOXB6!0.22!0.67!HOXB6;;chr17:46675539..46675551,-!p7@HOXB6!0.22!0.67!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.22!0.67!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!0.22!0.67!HOXB8;;chr17:47439327..47439336,-!p4@ZNF652!0.22!0.67!ZNF652;;chr17:59477403..59477414,+!p4@TBX2!0.22!0.67!TBX2;;chr17:7387478..7387483,-!p17@ZBTB4!0.22!0.67!ZBTB4;;chr18:22932004..22932021,-!p2@ZNF521!0.22!0.67!ZNF521;;chr18:3449488..3449499,+!p28@TGIF1!0.22!0.67!TGIF1;;chr18:46477326..46477341,-!p2@SMAD7!0.22!0.67!SMAD7;;chr18:52894476..52894484,-!p41@TCF4!0.22!0.67!TCF4;;chr18:53254750..53254764,-!p58@TCF4!0.22!0.67!TCF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.22!0.67!ONECUT2;;chr18:56532079..56532095,+!p8@ZNF532!0.22!0.67!ZNF532;;chr19:13135386..13135435,+!p4@NFIX!0.22!0.67!NFIX;;chr19:13213954..13214021,-!p4@LYL1!0.22!0.67!LYL1;;chr19:1622138..1622153,-!p7@TCF3!0.22!0.67!TCF3;;chr19:16435735..16435773,+!p4@KLF2!0.22!0.67!KLF2;;chr19:3359158..3359209,+!p5@NFIC!0.22!0.67!NFIC;;chr19:3381943..3381961,+!p8@NFIC!0.22!0.67!NFIC;;chr19:37096424..37096456,-!p6@ZNF529!0.22!0.67!ZNF529;;chr19:37464453..37464515,+!p4@ZNF568!0.22!0.67!ZNF568;;chr19:39390320..39390346,+!p5@NFKBIB!0.22!0.67!NFKBIB;;chr19:50432104..50432126,+!p6@ATF5!0.22!0.67!ATF5;;chr19:53758167..53758190,-!p3@ZNF677!0.22!0.67!ZNF677;;chr19:56146455..56146471,+!p19@ZNF580,p7@ZNF581!0.22!0.67!ZNF580;;chr19:56879817..56879825,+!p4@ZNF542!0.22!0.67!ZNF542;;chr19:57352109..57352153,-!p2@ZIM2!0.22!0.67!ZIM2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.22!0.67!ZSCAN1;;chr1:10856694..10856715,-!p3@CASZ1!0.22!0.67!CASZ1;;chr1:119530493..119530572,-!p1@TBX15!0.22!0.67!TBX15;;chr1:14026722..14026733,+!p5@PRDM2!0.22!0.67!PRDM2;;chr1:151030388..151030419,+!p9@MLLT11!0.22!0.67!MLLT11;;chr1:156460436..156460462,-!p7@MEF2D!0.22!0.67!MEF2D;;chr1:157069495..157069541,-!p2@ETV3L!0.22!0.67!ETV3L;;chr1:158969727..158969749,+!p11@IFI16!0.22!0.67!IFI16;;chr1:161014760..161014788,-!p4@USF1!0.22!0.67!USF1;;chr1:164528667..164528674,+!p18@PBX1!0.22!0.67!PBX1;;chr1:164528866..164528877,+!p12@PBX1!0.22!0.67!PBX1;;chr1:167301096..167301102,+!p13@POU2F1!0.22!0.67!POU2F1;;chr1:170632108..170632114,+!p29@PRRX1!0.22!0.67!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.22!0.67!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.22!0.67!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.22!0.67!LHX9;;chr1:221052669..221052678,+!p12@HLX!0.22!0.67!HLX;;chr1:221053526..221053540,+!p13@HLX!0.22!0.67!HLX;;chr1:221054853..221054873,+!p9@HLX!0.22!0.67!HLX;;chr1:244219392..244219409,+!p5@ZNF238!0.22!0.67!ZNF238;;chr1:37945588..37945604,+!p3@ZC3H12A!0.22!0.67!ZC3H12A;;chr1:37947257..37947292,+!p4@ZC3H12A!0.22!0.67!ZC3H12A;;chr1:61542922..61542955,+!p10@NFIA!0.22!0.67!NFIA;;chr1:78432503..78432507,-!p12@FUBP1!0.22!0.67!FUBP1;;chr1:8483692..8483703,-!p26@RERE!0.22!0.67!RERE;;chr20:23342653..23342680,+!p3@GZF1!0.22!0.67!GZF1;;chr20:49547417..49547424,-!p8@ADNP!0.22!0.67!ADNP;;chr20:50179425..50179434,-!p7@NFATC2!0.22!0.67!NFATC2;;chr21:36260495..36260506,-!p23@RUNX1!0.22!0.67!RUNX1;;chr21:36421626..36421631,-!p31@RUNX1!0.22!0.67!RUNX1;;chr19:19303731..19303783,+!p1@RFXANK!0.21!34.29!RFXANK;;chr12:51157744..51157796,+!p2@ATF1!0.21!9.41!ATF1;;chr9:14314131..14314147,-!p2@NFIB!0.21!7.40!NFIB;;chr19:5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Line 45: Line 45:
 
|is_obsolete=
 
|is_obsolete=
 
|library_id=CNhs13339
 
|library_id=CNhs13339
|library_id_phase_based=1:CNhs13339
+
|library_id_phase_based=2:CNhs13339
|name=Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)
+
|name="Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)"
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 
|profile_cagescan=
 
|profile_cagescan=
|profile_hcage=CNhs13339,LSID1022,release013,COMPLETED
+
|profile_hcage="CNhs13339,LSID1022,release013,COMPLETED"
 
|profile_rnaseq=
 
|profile_rnaseq=
 
|profile_srnaseq=
 
|profile_srnaseq=
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|sample_cell_line=
 
|sample_cell_line=
 
|sample_cell_lot=
 
|sample_cell_lot=
|sample_cell_type=smooth muscle cell, vascular associated
+
|sample_cell_type="smooth muscle cell, vascular associated"
 
|sample_collaboration=Levon Khachigian (University of New South Wales)
 
|sample_collaboration=Levon Khachigian (University of New South Wales)
 
|sample_company=
 
|sample_company=

Revision as of 10:54, 27 November 2014


Name:"Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)"
Species:Human (Homo sapiens)
Library ID:CNhs13339
Sample type:time courses
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell type"smooth muscle cell, vascular associated"
cell lineNA
companyNA
collaborationLevon Khachigian (University of New South Wales)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005537
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13339 CAGE DRX008579 DRR009451
Accession ID Hg19

Library idBAMCTSS
CNhs13339 DRZ000876 DRZ002261
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>dataNo results for this sample

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs13339This sample isn't target for the analysis

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs13339This sample isn't target for the analysis

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: "CNhs13339


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)