FFCP PHASE1:Hg19::chr21:35893932..35893939,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1827 | |EntrezGene=1827 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3040 | |HGNC=3040 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-51bp_to_ENST00000487434_5end | |association_with_transcript=-51bp_to_ENST00000487434_5end | ||
|cluster_id=chr21:35893932..35893939,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_16_at_RCAN1_5end | |description=CAGE_peak_16_at_RCAN1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.17e-15;12!CL:0000346;6.78e-08;3!CL:1000428;6.78e-08;3 | |ontology_enrichment_celltype_v019=CL:0000182;1.17e-15;12!CL:0000346;6.78e-08;3!CL:1000428;6.78e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.00e-15,12;CL:0000346,6.34e-08,3;CL:1000428,6.34e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.25e-08;11!UBERON:0009497;4.39e-07;13 | |ontology_enrichment_development_v019=UBERON:0004161;3.25e-08;11!UBERON:0009497;4.39e-07;13 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!7.23e-08!26;UBERON:0002107!2.73e-07!19;UBERON:0006925!2.73e-07!19;UBERON:0008836!2.73e-07!19 | |ontology_enrichment_uberon=UBERON:0005057!7.23e-08!26;UBERON:0002107!2.73e-07!19;UBERON:0006925!2.73e-07!19;UBERON:0008836!2.73e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.45e-26;19!UBERON:0006925;2.45e-26;19!UBERON:0002423;4.42e-20;25!UBERON:0002365;3.35e-16;31!UBERON:0002330;3.35e-16;31!UBERON:0002368;5.03e-14;33!UBERON:0000949;3.10e-10;43!UBERON:0000412;6.78e-08;3!UBERON:0001992;6.78e-08;3!UBERON:0005172;1.89e-07;52!UBERON:0005173;1.89e-07;52!UBERON:0001007;9.76e-07;81 | |ontology_enrichment_uberon_v019=UBERON:0002107;2.45e-26;19!UBERON:0006925;2.45e-26;19!UBERON:0002423;4.42e-20;25!UBERON:0002365;3.35e-16;31!UBERON:0002330;3.35e-16;31!UBERON:0002368;5.03e-14;33!UBERON:0000949;3.10e-10;43!UBERON:0000412;6.78e-08;3!UBERON:0001992;6.78e-08;3!UBERON:0005172;1.89e-07;52!UBERON:0005173;1.89e-07;52!UBERON:0001007;9.76e-07;81 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.09e-26,19;UBERON:0006925,2.09e-26,19;UBERON:0008836,2.09e-26,19;UBERON:0008835,7.63e-23,22;UBERON:0003894,7.63e-23,22;UBERON:0009854,7.32e-22,23;UBERON:0007499,3.92e-20,25;UBERON:0009497,3.92e-20,25;UBERON:0000015,3.92e-20,25;UBERON:0002423,3.92e-20,25;UBERON:0006235,3.92e-20,25;UBERON:0004161,3.92e-20,25;UBERON:0009856,2.28e-19,26;UBERON:0002365,2.81e-16,31;UBERON:0002330,2.81e-16,31;UBERON:0002368,1.94e-14,35;UBERON:0000949,2.91e-11,45;UBERON:0003929,2.12e-09,54;UBERON:0005172,2.12e-09,54;UBERON:0005173,2.12e-09,54;UBERON:0002530,1.31e-08,59;UBERON:0002417,1.81e-08,60;UBERON:0000916,1.81e-08,60;UBERON:0000412,6.34e-08,3;UBERON:0001992,6.34e-08,3 | |||
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| ||
|short_description=p16@RCAN1 | |short_description=p16@RCAN1 | ||
}} | }} |
Latest revision as of 06:00, 18 September 2015
Short description: | p16@RCAN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RCAN1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -51bp_to_ENST00000487434_5end |
EntrezGene: | RCAN1 |
HGNC: | 3040 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.00e-15 | 12 |
hair follicle dermal papilla cell | 6.34e-08 | 3 |
stem cell of epidermis | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
liver | 2.09e-26 | 19 |
digestive gland | 2.09e-26 | 19 |
liver bud | 2.09e-26 | 19 |
hepatic diverticulum | 7.63e-23 | 22 |
liver primordium | 7.63e-23 | 22 |
digestive tract diverticulum | 7.32e-22 | 23 |
epithelial sac | 3.92e-20 | 25 |
epithelium of foregut-midgut junction | 3.92e-20 | 25 |
anatomical boundary | 3.92e-20 | 25 |
hepatobiliary system | 3.92e-20 | 25 |
foregut-midgut junction | 3.92e-20 | 25 |
septum transversum | 3.92e-20 | 25 |
sac | 2.28e-19 | 26 |
exocrine gland | 2.81e-16 | 31 |
exocrine system | 2.81e-16 | 31 |
endocrine gland | 1.94e-14 | 35 |
endocrine system | 2.91e-11 | 45 |
gut epithelium | 2.12e-09 | 54 |
abdomen element | 2.12e-09 | 54 |
abdominal segment element | 2.12e-09 | 54 |
gland | 1.31e-08 | 59 |
abdominal segment of trunk | 1.81e-08 | 60 |
abdomen | 1.81e-08 | 60 |
dermal papilla | 6.34e-08 | 3 |
papillary layer of dermis | 6.34e-08 | 3 |