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MCL coexpression mm9:103: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0030020;extracellular matrix structural constituent conferring tensile strength;0.000256868543843512;12842,12843!GO:0005581;collagen;0.000256868543843512;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000476698904675318;12842,12843!GO:0006817;phosphate transport;0.000476698904675318;12842,12843!GO:0044420;extracellular matrix part;0.000721351438663609;12842,12843!GO:0015698;inorganic anion transport;0.00139480863477384;12842,12843!GO:0006820;anion transport;0.00168113383247393;12842,12843!GO:0004287;prolyl oligopeptidase activity;0.00368729276955042;14089!GO:0005578;proteinaceous extracellular matrix;0.00368729276955042;12842,12843!GO:0004274;dipeptidyl-peptidase IV activity;0.00552056467053565;14089!GO:0008239;dipeptidyl-peptidase activity;0.00788436042515823;14089!GO:0016806;dipeptidyl-peptidase and tripeptidyl-peptidase activity;0.00788436042515823;14089!GO:0022610;biological adhesion;0.0104281690955106;12842,12843!GO:0007155;cell adhesion;0.0104281690955106;12842,12843!GO:0006811;ion transport;0.0134314950248656;12842,12843!GO:0008238;exopeptidase activity;0.0461127810323622;14089!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.0649607140961546,-0.175299256684296,-0.181991010860678,-0.195661476629111,-0.195661476629111,-0.195661476629111,-0.192957178774251,-0.193984510240319,-0.195661476629111,-0.194245385644234,-0.195129401229974,-0.195403088060378,-0.195661476629111,-0.195661476629111,-0.180535549763063,-0.186093136772096,-0.19387591863591,-0.195168393734894,-0.19522888614734,-0.194470555622437,0.00128498947017723,-0.166149801885743,-0.179739110786265,-0.19133138400656,-0.193203123559358,-0.187088216586464,-0.181744238800903,-0.188402015993911,-0.187883571880574,-0.187564783464875,-0.191967832141695,-0.194006237059245,-0.195661476629111,-0.137745443892167,-0.195661476629111,-0.195661476629111,-0.195661476629111,-0.194484429929609,-0.193717711628476,-0.195661476629111,-0.190989062628521,-0.195661476629111,-0.192996737359383,0.133427747040978,0.114426957377415,0.284926887123261,0.502124430870976,0.14569374850451,0.196933785081627,0.194128390250529,0.316456931969714,0.158275317500353,-0.195661476629111,-0.195661476629111,-0.195661476629111,0.575573728367147,0.629561695618056,0.351961907003763,-0.170680669807287,-0.171804845316831,-0.139203337502764,0.342595299050946,0.442684013004181,0.056518770238744,0.0777408877402529,0.0627457971595869,0.414281999937088,0.184385612638361,-0.14638491427976,-0.143177313044383,-0.146735573428824,0.025858869116365,0.0826845501520677,-0.184175174104659,-0.180818856759105,-0.167849484483899,-0.170541187784058,-0.169432526855061,-0.174968548942042,-0.174236759008997,-0.146549159885732,-0.143435091870509,-0.152808694284669,-0.123615438861216,-0.132037553676548,0.0881188285212643,0.0543868593970883,-0.0774963458941982,-0.0893246781948282,-0.0923801187693074,-0.139329073412692,-0.139948868260975,-0.178959142105027,-0.186418551997856,-0.185175521800825,-0.193168815761574,0.143552699983387,0.448238790940662,0.509882210786773,0.468632579786337,-0.123285612324629,0.352813620397677,0.274062483050814,0.308618426666301,-0.193682199539187,-0.194140921841446,-0.192906626838537,-0.0789102429717052,-0.141923349379362,-0.137023572703466,0.351693823761986,0.33285541921609,0.309645071928055,0.198654174071156,0.306958092002315,0.00398765200632488,0.188813162808849,-0.0327279790070166,0.304666742962419,0.988400176341115,0.992666606995257,1.23923031319188,-0.118514730599163,-0.174636955377247,-0.142404506114069,-0.110251541397599,-0.186875515413968,-0.192497235082865,-0.19409366165299,-0.175037760572063,-0.183125981073525,-0.184361526506893,-0.174643282127342,-0.159624173036928,-0.177947216596233,-0.162989771189866,0.685845283471764,0.989475095880065,-0.112782396774712,-0.0884948562424879,-0.0374313239128267,0.0776819164948821,0.174790837043664,0.475862665185286,0.46964752632768,0.483921655111092,0.42576045448217,0.337909037672835,-0.0773363323200275,0.0215430167863545,0.138194531613728,0.338599596818682,0.5156889718148,0.74541297292874,0.771907877109707,0.172168294370692,-0.19387067080942,-0.192964345650861,-0.191451386647531,-0.0632380386160732,0.0342663362212633,0.0949111877335332,0.134453120590394,0.0751762180580477,0.230951130841412,0.182397563149075,0.177806631497519,0.126465702050519,0.192982173536887,0.272156324813239,0.0786348705049826,0.038776403403033,0.0666870070198646,-0.00748456780170757,-0.174231469351908,-0.130324148712173,-0.166618009472221,-0.120111718746477,0.0774810572735718,0.170885724423139,0.167152604614588,0.133718332374074,0.0942603309540035,0.0950122263076897,0.176922553206812,0.12321594066223,0.172509623492006,0.16744141324074,0.178606190563651,0.216248398111378,0.0927925520393666,-0.0140417170156179,0.0431083229036021,0.122547400112203,0.0788720822461894,0.151327667020547,0.132171468952991,0.112870250448257,0.0766568487262803,-0.0706571240758801,-0.0255049009514202,-0.0768892276418516,-0.166435585470375,-0.0712152453098552,-0.053975074162495,-0.0884607134442123,-0.0996947662595859,-0.0834239759274604,-0.071409767312812,-0.0829214560584148,-0.0161000251423546,-0.0498584289889101,0.386767691464616,0.0248083598274946,-0.000480053455806452,-0.0880913522014664,-0.0807646381200531,-0.0935545255353756,-0.0807962012225806,0.0387321339222459,0.126082777044777,0.173663466276741,0.178447842357524,0.0727099523701277,0.126216414203669,0.184720919148299,0.205601761090288,0.279443709703623,0.250272702064366,0.131600645712755,0.190766114514644,0.0967364932094448,-0.195661476629111,-0.194199300148132,0.0176350416354313,0.0685782139559887,-0.166318454505008,-0.14644641508052,0.226576006296561,0.623178649234724,-0.0764347274393912,-0.0853644380025021,-0.119388245185748,-0.140970193399235,-0.146481795031987,-0.161912021313839,-0.0614153159222809,-0.0152431534212267,-0.103491791412937,-0.1673585967205,0.0793399383184411,0.519609785421979,0.509880599013172,0.238228650461639,-0.114500463830848,0.2076540690659,0.16031654912133,0.138132597552171,0.183897200391083,0.169266037379261,0.185653741916288,0.263466553513734,0.319218372715112,0.0793398226110285,-0.0497401933150114,-0.0235050712610546,-0.151218364396342,-0.0181527965423918,0.0730805152250424,0.184210902290272,0.135886438939278,0.507731153893618,0.491866799161976,0.387525376869574,-0.022323588336034,-0.0207515079885899,-0.126483723289735,0.560260469983996,0.572031673295987,0.425982833787528,0.523442396150021,0.477770800832572,0.140668374454773,-0.143933961342902,-0.145544570857059,0.267062425941507,0.107359446671912,-0.0492442445403823,-0.0890167152725276,-0.087685236903158,-0.184737861721967,-0.193599333133802,-0.186342347746596,0.0757412330953388,0.00944731967401213,0.177520318455867,0.303322363259521,0.35073804900077,0.31195574464074,0.386992067058328,0.364244081409881,0.222225566687876,0.134550517571866,-0.121183088070338,-0.167265489590994,0.0421299999700106,0.066728007401376,0.249505556702134,0.30799743835459,0.32491928605313,0.338245143858273,0.354339917884658,0.143111880482646,0.0409548042171273,0.0713550962633429,-0.16934423627731,0.190912277733952,0.185882507568119,0.0194888974029909,-0.00635328747629018,-0.0208539131847795,-0.0660645279565641,-0.0611475269943039,-0.0681331162895506,-0.100230186333501,-0.111262967227138,-0.15361055081176,-0.150026660874382,-0.15631070168797,-0.0885034765120985,-0.191610205133827,-0.185631966024497,-0.178055074943979,0.141741023806026,0.534705565761472,0.301175623049395,0.216914976745944,-0.124380779269571,-0.161879799921455,-0.168106846105857,-0.158037433321296,-0.147534085329366,-0.174178514152504,-0.174393461779226,-0.165613989637157,-0.17592098289633,-0.17845602965839,-0.175833043555508,-0.134784453896089,0.0282224893178443,0.110826996285486,0.415001464082247,0.0348588126287401,0.183350893280916,0.473618773297641,0.481989225521542,0.434728155940444,0.444997690626465,0.4608909132799,0.43668481286769,0.466719465653031,0.440480985273262,0.42313989716495,0.403026126528591,0.441385006111756,0.495242504755271,0.472798173402201,0.476489033311444,0.555822236572565,0.553124017606105,0.522872775846715,0.460632259473269,0.434188239051547,0.472562664484733,0.503586067463465,0.532418373594927,0.519878606851828,0.533777641510347,0.457389066447559,0.507435548720042,0.589425362614283,0.416332662434834,0.467707458935889,0.689410497331665,0.573092206848745,0.603700427777767,0.811997507363674,0.860462930405312,0.746811230116804
|gostat_on_MCL_coexpression=GO:0030020;extracellular matrix structural constituent conferring tensile strength;0.000256868543843512;12842,12843!GO:0005581;collagen;0.000256868543843512;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000476698904675318;12842,12843!GO:0006817;phosphate transport;0.000476698904675318;12842,12843!GO:0044420;extracellular matrix part;0.000721351438663609;12842,12843!GO:0015698;inorganic anion transport;0.00139480863477384;12842,12843!GO:0006820;anion transport;0.00168113383247393;12842,12843!GO:0004287;prolyl oligopeptidase activity;0.00368729276955042;14089!GO:0005578;proteinaceous extracellular matrix;0.00368729276955042;12842,12843!GO:0004274;dipeptidyl-peptidase IV activity;0.00552056467053565;14089!GO:0008239;dipeptidyl-peptidase activity;0.00788436042515823;14089!GO:0016806;dipeptidyl-peptidase and tripeptidyl-peptidase activity;0.00788436042515823;14089!GO:0022610;biological adhesion;0.0104281690955106;12842,12843!GO:0007155;cell adhesion;0.0104281690955106;12842,12843!GO:0006811;ion transport;0.0134314950248656;12842,12843!GO:0008238;exopeptidase activity;0.0461127810323622;14089!
}}

Revision as of 11:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:55208064..55208101,-p@chr11:55208064..55208101
-
Mm9::chr11:55208228..55208240,-p@chr11:55208228..55208240
-
Mm9::chr11:55208247..55208258,-p@chr11:55208247..55208258
-
Mm9::chr11:94797560..94797574,+p1@Col1a1
Mm9::chr11:94799217..94799260,+p@chr11:94799217..94799260
+
Mm9::chr11:94799266..94799369,+p@chr11:94799266..94799369
+
Mm9::chr11:94799291..94799302,-p@chr11:94799291..94799302
-
Mm9::chr11:94799344..94799407,-p@chr11:94799344..94799407
-
Mm9::chr11:94799378..94799392,+p@chr11:94799378..94799392
+
Mm9::chr11:94799563..94799574,-p@chr11:94799563..94799574
-
Mm9::chr11:94799813..94799852,+p3@Col1a1
Mm9::chr11:94799879..94799901,+p4@Col1a1
Mm9::chr11:94800697..94800744,+p5@Col1a1
Mm9::chr11:94801006..94801032,+p@chr11:94801006..94801032
+
Mm9::chr11:94801214..94801242,+p@chr11:94801214..94801242
+
Mm9::chr11:94803319..94803361,+p@chr11:94803319..94803361
+
Mm9::chr11:94803693..94803724,+p@chr11:94803693..94803724
+
Mm9::chr11:94804105..94804136,+p@chr11:94804105..94804136
+
Mm9::chr11:94804150..94804191,-p@chr11:94804150..94804191
-
Mm9::chr11:94805034..94805050,+p@chr11:94805034..94805050
+
Mm9::chr11:94805053..94805091,+p@chr11:94805053..94805091
+
Mm9::chr11:94805665..94805699,+p@chr11:94805665..94805699
+
Mm9::chr11:94805939..94805955,-p@chr11:94805939..94805955
-
Mm9::chr11:94806060..94806096,+p@chr11:94806060..94806096
+
Mm9::chr11:94806219..94806250,+p6@Col1a1
Mm9::chr11:94806676..94806701,+p7@Col1a1
Mm9::chr11:94806873..94806893,+p@chr11:94806873..94806893
+
Mm9::chr11:94807117..94807146,+p@chr11:94807117..94807146
+
Mm9::chr11:94808083..94808118,+p@chr11:94808083..94808118
+
Mm9::chr11:94808423..94808459,+p@chr11:94808423..94808459
+
Mm9::chr11:94808944..94808949,+p@chr11:94808944..94808949
+
Mm9::chr11:94808975..94808987,+p@chr11:94808975..94808987
+
Mm9::chr11:94809019..94809051,+p@chr11:94809019..94809051
+
Mm9::chr11:94809191..94809214,+p@chr11:94809191..94809214
+
Mm9::chr11:94809219..94809256,+p@chr11:94809219..94809256
+
Mm9::chr11:94809677..94809702,+p@chr11:94809677..94809702
+
Mm9::chr11:94810027..94810047,+p@chr11:94810027..94810047
+
Mm9::chr11:94810048..94810099,+p@chr11:94810048..94810099
+
Mm9::chr11:94810684..94810748,+p@chr11:94810684..94810748
+
Mm9::chr11:94811404..94811488,+p@chr11:94811404..94811488
+
Mm9::chr11:94811600..94811621,+p@chr11:94811600..94811621
+
Mm9::chr11:94811624..94811643,+p@chr11:94811624..94811643
+
Mm9::chr11:94811649..94811669,+p@chr11:94811649..94811669
+
Mm9::chr11:94811702..94811748,+p@chr11:94811702..94811748
+
Mm9::chr11:94811752..94811776,+p@chr11:94811752..94811776
+
Mm9::chr11:94811786..94811789,+p@chr11:94811786..94811789
+
Mm9::chr11:94811795..94811810,+p@chr11:94811795..94811810
+
Mm9::chr11:94811811..94811864,+p@chr11:94811811..94811864
+
Mm9::chr11:94812017..94812058,+p@chr11:94812017..94812058
+
Mm9::chr11:94812063..94812152,+p@chr11:94812063..94812152
+
Mm9::chr11:94812156..94812212,-p@chr11:94812156..94812212
-
Mm9::chr11:94812163..94812170,+p@chr11:94812163..94812170
+
Mm9::chr11:94812175..94812179,+p@chr11:94812175..94812179
+
Mm9::chr11:94812185..94812190,+p@chr11:94812185..94812190
+
Mm9::chr11:94812419..94812464,+p@chr11:94812419..94812464
+
Mm9::chr11:94812471..94812485,+p@chr11:94812471..94812485
+
Mm9::chr11:94812488..94812542,+p@chr11:94812488..94812542
+
Mm9::chr11:94812525..94812571,-p@chr11:94812525..94812571
-
Mm9::chr11:94812543..94812554,+p@chr11:94812543..94812554
+
Mm9::chr11:94812557..94812568,+p@chr11:94812557..94812568
+
Mm9::chr11:94812603..94812638,+p@chr11:94812603..94812638
+
Mm9::chr11:94812610..94812635,-p@chr11:94812610..94812635
-
Mm9::chr11:94812775..94812791,+p@chr11:94812775..94812791
+
Mm9::chr11:94812800..94812851,+p@chr11:94812800..94812851
+
Mm9::chr11:94812823..94812851,-p@chr11:94812823..94812851
-
Mm9::chr11:94812856..94812891,-p@chr11:94812856..94812891
-
Mm9::chr11:94812869..94812881,+p@chr11:94812869..94812881
+
Mm9::chr11:94812891..94812914,+p@chr11:94812891..94812914
+
Mm9::chr11:94812895..94812904,-p@chr11:94812895..94812904
-
Mm9::chr11:94812907..94812964,-p@chr11:94812907..94812964
-
Mm9::chr11:94812918..94812938,+p@chr11:94812918..94812938
+
Mm9::chr11:94812940..94812978,+p@chr11:94812940..94812978
+
Mm9::chr11:94812967..94812984,-p@chr11:94812967..94812984
-
Mm9::chr11:94812998..94813021,-p@chr11:94812998..94813021
-
Mm9::chr11:94813027..94813034,+p@chr11:94813027..94813034
+
Mm9::chr11:94813036..94813049,+p@chr11:94813036..94813049
+
Mm9::chr11:94813074..94813146,+p@chr11:94813074..94813146
+
Mm9::chr11:94813222..94813253,+p@chr11:94813222..94813253
+
Mm9::chr11:94813259..94813287,+p@chr11:94813259..94813287
+
Mm9::chr11:94813317..94813331,+p@chr11:94813317..94813331
+
Mm9::chr11:94813336..94813355,+p@chr11:94813336..94813355
+
Mm9::chr11:94813369..94813378,+p@chr11:94813369..94813378
+
Mm9::chr11:94813407..94813412,+p@chr11:94813407..94813412
+
Mm9::chr11:94813435..94813446,+p@chr11:94813435..94813446
+
Mm9::chr11:94813455..94813466,+p@chr11:94813455..94813466
+
Mm9::chr11:94813579..94813586,+p@chr11:94813579..94813586
+
Mm9::chr11:94813591..94813600,+p@chr11:94813591..94813600
+
Mm9::chr11:94813605..94813619,+p@chr11:94813605..94813619
+
Mm9::chr11:94813669..94813683,+p@chr11:94813669..94813683
+
Mm9::chr11:94813770..94813788,+p@chr11:94813770..94813788
+
Mm9::chr11:94813835..94813898,+p@chr11:94813835..94813898
+
Mm9::chr11:94813931..94813947,+p@chr11:94813931..94813947
+
Mm9::chr11:94814001..94814016,+p@chr11:94814001..94814016
+
Mm9::chr11:94814017..94814032,+p@chr11:94814017..94814032
+
Mm9::chr2:62411962..62412036,-p1@Fap
Mm9::chr6:4455695..4455709,+p1@Col1a2
Mm9::chr6:4460754..4460771,+p@chr6:4460754..4460771
+
Mm9::chr6:4466391..4466413,+p@chr6:4466391..4466413
+
Mm9::chr6:4471387..4471423,+p@chr6:4471387..4471423
+
Mm9::chr6:4480952..4480966,+p@chr6:4480952..4480966
+
Mm9::chr6:4481272..4481294,-p@chr6:4481272..4481294
-
Mm9::chr6:4483737..4483768,+p@chr6:4483737..4483768
+
Mm9::chr6:4487773..4487798,+p@chr6:4487773..4487798
+
Mm9::chr6:4487845..4487879,+p@chr6:4487845..4487879
+
Mm9::chr6:4487944..4487956,+p@chr6:4487944..4487956
+
Mm9::chr6:4488616..4488645,+p@chr6:4488616..4488645
+
Mm9::chr6:4488671..4488690,+p@chr6:4488671..4488690
+
Mm9::chr6:4488691..4488777,+p@chr6:4488691..4488777
+
Mm9::chr6:4489478..4489491,+p@chr6:4489478..4489491
+
Mm9::chr6:4489492..4489502,+p@chr6:4489492..4489502
+
Mm9::chr6:4489516..4489528,+p@chr6:4489516..4489528
+
Mm9::chr6:4489538..4489545,+p@chr6:4489538..4489545
+
Mm9::chr6:4489591..4489600,+p@chr6:4489591..4489600
+
Mm9::chr6:4489655..4489677,+p@chr6:4489655..4489677
+
Mm9::chr6:4490006..4490016,+p@chr6:4490006..4490016
+
Mm9::chr6:4490528..4490542,+p@chr6:4490528..4490542
+
Mm9::chr6:4490543..4490573,+p@chr6:4490543..4490573
+
Mm9::chr6:4490574..4490585,+p@chr6:4490574..4490585
+
Mm9::chr6:4490586..4490591,+p@chr6:4490586..4490591
+
Mm9::chr6:4490599..4490620,+p@chr6:4490599..4490620
+
Mm9::chr6:4490630..4490671,+p@chr6:4490630..4490671
+
Mm9::chr6:4490843..4490852,+p@chr6:4490843..4490852
+
Mm9::chr6:4490856..4490861,+p@chr6:4490856..4490861
+
Mm9::chr6:4490864..4490875,+p@chr6:4490864..4490875
+
Mm9::chr6:4490907..4490922,+p@chr6:4490907..4490922
+
Mm9::chr6:4491038..4491055,+p@chr6:4491038..4491055
+
Mm9::chr6:4491437..4491448,+p@chr6:4491437..4491448
+
Mm9::chr8:126415740..126415759,-p@chr8:126415740..126415759
-
Mm9::chrX:70740767..70740791,+p@chrX:70740767..70740791
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030020extracellular matrix structural constituent conferring tensile strength0.000256868543843512
GO:0005581collagen0.000256868543843512
GO:0005201extracellular matrix structural constituent0.000476698904675318
GO:0006817phosphate transport0.000476698904675318
GO:0044420extracellular matrix part0.000721351438663609
GO:0015698inorganic anion transport0.00139480863477384
GO:0006820anion transport0.00168113383247393
GO:0004287prolyl oligopeptidase activity0.00368729276955042
GO:0005578proteinaceous extracellular matrix0.00368729276955042
GO:0004274dipeptidyl-peptidase IV activity0.00552056467053565
GO:0008239dipeptidyl-peptidase activity0.00788436042515823
GO:0016806dipeptidyl-peptidase and tripeptidyl-peptidase activity0.00788436042515823
GO:0022610biological adhesion0.0104281690955106
GO:0007155cell adhesion0.0104281690955106
GO:0006811ion transport0.0134314950248656
GO:0008238exopeptidase activity0.0461127810323622



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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