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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0044249;cellular biosynthetic process;0.00253564774886875;27367,69895,270685!GO:0009257;10-formyltetrahydrofolate biosynthetic process;0.00253564774886875;270685!GO:0003735;structural constituent of ribosome;0.00253564774886875;27367,69895!GO:0005840;ribosome;0.00253564774886875;27367,69895!GO:0009058;biosynthetic process;0.00253564774886875;27367,69895,270685!GO:0009256;10-formyltetrahydrofolate metabolic process;0.00253564774886875;270685!GO:0004329;formate-tetrahydrofolate ligase activity;0.00253564774886875;270685!GO:0009396;folic acid and derivative biosynthetic process;0.00776329406794076;270685!GO:0006412;translation;0.00887039156264768;27367,69895!GO:0030529;ribonucleoprotein complex;0.00887039156264768;27367,69895!GO:0006760;folic acid and derivative metabolic process;0.00887039156264768;270685!GO:0009059;macromolecule biosynthetic process;0.0161856074324591;27367,69895!GO:0044444;cytoplasmic part;0.0195166510969675;27367,69895,270685!GO:0006752;group transfer coenzyme metabolic process;0.0341338087604507;270685!GO:0046483;heterocycle metabolic process;0.0389122065212837;270685!GO:0006730;one-carbon compound metabolic process;0.0425345502092769;270685!GO:0009108;coenzyme biosynthetic process;0.0431377310490122;270685!GO:0051188;cofactor biosynthetic process;0.0470887349534143;270685!GO:0043232;intracellular non-membrane-bound organelle;0.0474648560494127;27367,69895!GO:0043228;non-membrane-bound organelle;0.0474648560494127;27367,69895!GO:0006725;aromatic compound metabolic process;0.0474648560494127;270685!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0044249;cellular biosynthetic process;0.00253564774886875;27367,69895,270685!GO:0009257;10-formyltetrahydrofolate biosynthetic process;0.00253564774886875;270685!GO:0003735;structural constituent of ribosome;0.00253564774886875;27367,69895!GO:0005840;ribosome;0.00253564774886875;27367,69895!GO:0009058;biosynthetic process;0.00253564774886875;27367,69895,270685!GO:0009256;10-formyltetrahydrofolate metabolic process;0.00253564774886875;270685!GO:0004329;formate-tetrahydrofolate ligase activity;0.00253564774886875;270685!GO:0009396;folic acid and derivative biosynthetic process;0.00776329406794076;270685!GO:0006412;translation;0.00887039156264768;27367,69895!GO:0030529;ribonucleoprotein complex;0.00887039156264768;27367,69895!GO:0006760;folic acid and derivative metabolic process;0.00887039156264768;270685!GO:0009059;macromolecule biosynthetic process;0.0161856074324591;27367,69895!GO:0044444;cytoplasmic part;0.0195166510969675;27367,69895,270685!GO:0006752;group transfer coenzyme metabolic process;0.0341338087604507;270685!GO:0046483;heterocycle metabolic process;0.0389122065212837;270685!GO:0006730;one-carbon compound metabolic process;0.0425345502092769;270685!GO:0009108;coenzyme biosynthetic process;0.0431377310490122;270685!GO:0051188;cofactor biosynthetic process;0.0470887349534143;270685!GO:0043232;intracellular non-membrane-bound organelle;0.0474648560494127;27367,69895!GO:0043228;non-membrane-bound organelle;0.0474648560494127;27367,69895!GO:0006725;aromatic compound metabolic process;0.0474648560494127;270685!
}}

Revision as of 11:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:6373383..6373454,-p1@Mthfd1l
Mm9::chr14:52817186..52817193,+p1@ENSMUST00000143086
p1@uc007tos.1
Mm9::chr15:79913772..79913789,-p1@Gm12816
p1@LOC674810
p1@Rpl3
Mm9::chr17:24665188..24665209,+p1@2610019E17Rik
Mm9::chr17:24856834..24856861,-p1@Snhg9
Mm9::chr3:123211248..123211259,-p1@Snhg8
Mm9::chr9:88417714..88417733,-p1@ENSMUST00000034997
p1@uc009qys.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0044249cellular biosynthetic process0.00253564774886875
GO:000925710-formyltetrahydrofolate biosynthetic process0.00253564774886875
GO:0003735structural constituent of ribosome0.00253564774886875
GO:0005840ribosome0.00253564774886875
GO:0009058biosynthetic process0.00253564774886875
GO:000925610-formyltetrahydrofolate metabolic process0.00253564774886875
GO:0004329formate-tetrahydrofolate ligase activity0.00253564774886875
GO:0009396folic acid and derivative biosynthetic process0.00776329406794076
GO:0006412translation0.00887039156264768
GO:0030529ribonucleoprotein complex0.00887039156264768
GO:0006760folic acid and derivative metabolic process0.00887039156264768
GO:0009059macromolecule biosynthetic process0.0161856074324591
GO:0044444cytoplasmic part0.0195166510969675
GO:0006752group transfer coenzyme metabolic process0.0341338087604507
GO:0046483heterocycle metabolic process0.0389122065212837
GO:0006730one-carbon compound metabolic process0.0425345502092769
GO:0009108coenzyme biosynthetic process0.0431377310490122
GO:0051188cofactor biosynthetic process0.0470887349534143
GO:0043232intracellular non-membrane-bound organelle0.0474648560494127
GO:0043228non-membrane-bound organelle0.0474648560494127
GO:0006725aromatic compound metabolic process0.0474648560494127



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}