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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0003735;structural constituent of ribosome;0.00114928015399592;114641,319195!GO:0005840;ribosome;0.00114928015399592;114641,319195!GO:0006412;translation;0.00426107607803767;114641,319195!GO:0030529;ribonucleoprotein complex;0.00426107607803767;114641,319195!GO:0009059;macromolecule biosynthetic process;0.00711973963157119;114641,319195!GO:0044249;cellular biosynthetic process;0.010248901411155;114641,319195!GO:0015934;large ribosomal subunit;0.0140788124567925;319195!GO:0009058;biosynthetic process;0.0140788124567925;114641,319195!GO:0043228;non-membrane-bound organelle;0.0178799545036496;114641,319195!GO:0043232;intracellular non-membrane-bound organelle;0.0178799545036496;114641,319195!GO:0033279;ribosomal subunit;0.0178799545036496;319195!GO:0032991;macromolecular complex;0.0279377444569467;114641,319195!GO:0044267;cellular protein metabolic process;0.0400583390841314;114641,319195!GO:0044260;cellular macromolecule metabolic process;0.0400583390841314;114641,319195!GO:0010467;gene expression;0.0400583390841314;114641,319195!GO:0019538;protein metabolic process;0.0400583390841314;114641,319195!GO:0044444;cytoplasmic part;0.0478671182542338;114641,319195!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0003735;structural constituent of ribosome;0.00114928015399592;114641,319195!GO:0005840;ribosome;0.00114928015399592;114641,319195!GO:0006412;translation;0.00426107607803767;114641,319195!GO:0030529;ribonucleoprotein complex;0.00426107607803767;114641,319195!GO:0009059;macromolecule biosynthetic process;0.00711973963157119;114641,319195!GO:0044249;cellular biosynthetic process;0.010248901411155;114641,319195!GO:0015934;large ribosomal subunit;0.0140788124567925;319195!GO:0009058;biosynthetic process;0.0140788124567925;114641,319195!GO:0043228;non-membrane-bound organelle;0.0178799545036496;114641,319195!GO:0043232;intracellular non-membrane-bound organelle;0.0178799545036496;114641,319195!GO:0033279;ribosomal subunit;0.0178799545036496;319195!GO:0032991;macromolecular complex;0.0279377444569467;114641,319195!GO:0044267;cellular protein metabolic process;0.0400583390841314;114641,319195!GO:0044260;cellular macromolecule metabolic process;0.0400583390841314;114641,319195!GO:0010467;gene expression;0.0400583390841314;114641,319195!GO:0019538;protein metabolic process;0.0400583390841314;114641,319195!GO:0044444;cytoplasmic part;0.0478671182542338;114641,319195!
}}

Revision as of 11:19, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:122230170..122230176,+p@chr14:122230170..122230176
+
Mm9::chr14:48189081..48189085,+p1@Gm6616
Mm9::chr18:75160143..75160153,+p4@Gm10294
p4@Rpl17
Mm9::chr19:37858699..37858749,+p@chr19:37858699..37858749
+
Mm9::chr1:39424719..39424730,+p3@Gm10191
p3@Gm13004
p3@Gm7689
p3@Gm8759
p3@LOC100505081
p3@LOC638399
p3@Rpl31
Mm9::chr7:58713316..58713326,+p1@ENSMUST00000077381
Mm9::chr9:57181873..57181884,+p1@Gm5121


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0003735structural constituent of ribosome0.00114928015399592
GO:0005840ribosome0.00114928015399592
GO:0006412translation0.00426107607803767
GO:0030529ribonucleoprotein complex0.00426107607803767
GO:0009059macromolecule biosynthetic process0.00711973963157119
GO:0044249cellular biosynthetic process0.010248901411155
GO:0015934large ribosomal subunit0.0140788124567925
GO:0009058biosynthetic process0.0140788124567925
GO:0043228non-membrane-bound organelle0.0178799545036496
GO:0043232intracellular non-membrane-bound organelle0.0178799545036496
GO:0033279ribosomal subunit0.0178799545036496
GO:0032991macromolecular complex0.0279377444569467
GO:0044267cellular protein metabolic process0.0400583390841314
GO:0044260cellular macromolecule metabolic process0.0400583390841314
GO:0010467gene expression0.0400583390841314
GO:0019538protein metabolic process0.0400583390841314
GO:0044444cytoplasmic part0.0478671182542338



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}