Personal tools

Difference between revisions of "MCL coexpression mm9:1537"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 1: Line 1:
 
{{MCL_coexpression_mm9
 
{{MCL_coexpression_mm9
 
|coexpression_dpi_cluster_scores_mean=0.00374505694199086,0.88275229328153,0.936799276305707,0.721112663731858,0.775192814967458,0.492846319035897,0.444984712421779,0.0370202590975189,0.0337785207133931,0.0100473000518534,-0.0217666357941698,-0.0044731704495408,0.0116907384704142,-0.0140195882107517,0.0654665569422646,0.0781197146482228,-0.00127795347412437,0.04004744739769,0.0457193828943176,0.0724286684028476,0.091259281955406,-0.0182958844598489,0.00291411223086234,0.417130170851016,0.210066237510577,0.723670665941428,0.636156944358502,0.615293346223162,0.270151850447437,0.216479754474851,0.430793412191593,0.0452866289931976,0.0746870774004648,-0.0473453496987042,0.236213574021331,0.197576357969935,0.236301744715548,0.050721033902755,0.00280378731767578,0.0148802338327593,0.0202049070508204,0.0274609379178718,-0.0129702131192182,0.028147410213439,0.0396771866760766,0.0632647671710088,0.0344647650409002,0.0134969660852884,-0.0157107176176209,0.00262730225980002,-0.00125903432359886,-0.0473453496987042,0.0201256636051224,-0.0473453496987042,0.0518274635679458,0.0337429320807666,0.0189860075563766,0.0338609943718262,-0.031341591087806,0.0153429629347711,-0.0473453496987042,0.0135757426839279,-0.0473453496987042,0.00840078592547102,-0.0473453496987042,0.0518034788286194,0.0662104659886218,0.0335144031329836,-0.0309766099640126,-0.0178089835116938,-0.0307649516727498,-0.003696115022293,-0.0473453496987042,-0.0283127632291258,-0.0314456228625886,-0.0473453496987042,0.0794185360392228,0.00812199407042388,0.0564652342855566,-0.03658478996286,-0.0146273189535088,-0.0109244541281599,0.0177878252094785,-0.00856674731090538,-0.0145703316448415,-0.0473453496987042,-0.0255820732350014,-0.0324991626669704,-0.0062065425982208,0.0153438021077409,0.0710247967584888,-0.0473453496987042,0.0722953150016622,-0.00985794769469896,-0.0473453496987042,-0.0151900245074733,0.104776589838184,0.0208628621440536,0.0342590682069704,0.0291790111033282,-0.00853279051488794,0.0243659055981854,-0.0473453496987042,-0.0473453496987042,0.150673142575504,0.191265065677623,0.109400878416006,0.144595210218354,-0.0110981041860783,0.0206457362516234,-0.021473722929435,-0.0242588316357452,-0.0293208737192086,-0.00636457534023456,-0.019343080391369,0.0144778851294996,0.221227295984793,-0.00770207680403906,-0.0473453496987042,0.0306968444626218,0.058379931646052,0.0463093731257476,0.0875871167017748,-0.0250403712065778,0.00551367716109554,0.338704820095278,0.0440503258950266,-0.0473453496987042,0.0238866891527012,0.0149433057641921,-0.0146236010878628,-0.0473453496987042,0.0147060244153134,-0.0473453496987042,-0.0171587060504696,0.031621504042223,0.00525114004015504,0.015283515385943,0.0523793889651803,0.187381447029695,0.0377671429500098,0.0490499268654793,0.138967140202726,0.126198144543389,0.101769934544799,0.0649971515281801,0.0733662914315587,0.150745247519215,-0.0162091692632874,0.0595319941083454,0.108579159168411,0.13084648316768,0.410972881907274,0.722528296410062,0.638277560295987,0.00352254541892678,-0.00114255955066958,-0.0274542570518234,0.00620584811517132,-0.0309948452281246,-0.0473453496987042,-0.00983070501677624,-0.0288893356203724,0.0186840479011841,-0.0224228208920094,-0.0141737997296279,0.0245840159955272,-0.0291153582452594,0.00480241852423792,-0.0125623425177032,-0.00392489986122838,-0.0157573407834271,-0.0157271411444877,-0.0364069295509014,-0.0168522167780608,-0.0310896292968316,0.580168953256352,0.500591592767899,-0.0473453496987042,-0.0110676979272266,0.233304040433391,0.238102414858204,0.273596883513827,0.205629097511791,0.454617705308819,0.328416412422542,0.231854166034828,0.237605644761907,0.301856432860258,0.358485629399881,0.348730824981634,0.449029202879853,-0.0171750521711299,0.0064426316804922,0.0182113071902028,-0.0176678482556268,0.00253394724519074,0.0553041886635394,0.00388357419338516,0.0197062449043228,0.0283151374436629,0.0419654751067962,-0.0069073607422429,0.0198631300112191,0.0347247802600788,0.0420520304957198,0.0364103667675244,0.0895034033886878,0.0955426158226632,0.0461790855497384,-0.0229500118185088,0.045788608586364,0.0703171533449938,0.000977984917868768,-0.023756088637289,-0.0277843329020568,-0.0207145727318466,-0.0131497184081354,0.21468541715251,-0.0322730875504284,-0.00972790623912066,0.0112820184921266,0.0998090090001315,0.165012290093123,0.23732627202239,0.190823755871735,0.0583173517990032,0.0877080616241832,0.129243017465471,0.280926941916334,0.101812737977531,0.128791449227795,-0.0473453496987042,0.0890356142022516,-0.0126053093361503,-0.0261795206855822,-0.00426001531800046,-0.0211734600343264,-0.0341596082155646,0.0113152424973187,-0.0048536820451222,0.00278145913970964,-0.0040451266844354,-0.0134141303194492,-0.0153358811238313,-0.00837850893973522,0.0487725445842046,0.0308868297693,-0.018412591691518,0.0010580268490902,0.0107673179129646,0.108638683634611,0.049610940468453,0.109610522146803,-0.0473453496987042,0.0402897735075846,-0.0473453496987042,-0.00839724659625796,0.0203940496139712,-0.0240613185026744,0.100823227769701,0.000116510574456369,0.0158274063529145,-0.0234917457723344,-0.0473453496987042,-0.0473453496987042,-0.00223804849332132,-0.0206297646102966,0.0116893265933092,-0.0042172499313408,0.0160749507994789,0.0222879670403125,-0.0226339461085706,0.00901557032119476,0.139276775679666,-0.0473453496987042,0.00758381651970736,0.928380776517889,0.796755834653854,0.779602722368001,0.960134992699384,1.04446760164677,0.34041558922693,0.00963669544455858,0.0542614632042058,0.0108099561923793,0.00958467282472102,0.0446442010267218,0.0702098326123552,0.072502763707931,0.0391375223107115,0.0382627258713486,0.022851469912077,0.205669746102282,0.0230115040959919,0.203340569960466,0.391651849507558,0.825703092972291,0.686469695566658,0.544943388348183,0.539444476486038,0.472242304561725,0.374087466925464,-0.0473453496987042,-0.00851505470171632,0.0148619157648718,-0.0123372335752676,-0.0164779869562571,-0.0273871541834832,0.0135552401528907,0.00439767701808426,0.0427925609654022,0.032883913689547,0,-0.0033749574704232,-0.0473453496987042,0.042843794496026,-0.0155226399014501,0.0133250684393551,0.0138682395729124,0.0283621910465184,-0.0187748746545386,-0.0154879554315572,0.00744422054861527,-0.0163228508400047,-0.0223140988034586,-0.00259777355873616,-0.00377884916614148,-0.0108539477562606,1.07984458968708,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,0.281998216662464,0.0302435125751662,0.0961707465555978,0.862953909753711,0.0129970934315997,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,-0.00202111500696332,-0.0473453496987042,0.0268698860123164,-0.0473453496987042,-0.0473453496987042,0.0506303901218727,-0.0216141027641474,-0.0181802625137361,0.0412972201192292,0.242369624699652,0.104238722296488,0.10899274723969,0.147854938254782,0.0790284696621186,0.103044059747291,0.101474689684425,0.170115915097964,0.10753007413421,0.183855631638633,0.167711958911476,0.176863238112468,0.0541583086210063,0.149647927243366,0.245721474586285,0.186619140123827,0.208785822733627,0.192143113598241,0.1889133689509,0.185821326084577,0.0906175822420902,0.157026372863408,0.162951779020615,0.239139052590118,0.146382017002845,0.107506425838123,0.209661721479707,0.150388917976339,0.14595555028309,0.206236327516383,0.18540657947437,0.374590637661696,0.474279388451625,0.357155140407559,0.333823785044792,0.237348470993264,0.320379659757316,0.0907552564692291
 
|coexpression_dpi_cluster_scores_mean=0.00374505694199086,0.88275229328153,0.936799276305707,0.721112663731858,0.775192814967458,0.492846319035897,0.444984712421779,0.0370202590975189,0.0337785207133931,0.0100473000518534,-0.0217666357941698,-0.0044731704495408,0.0116907384704142,-0.0140195882107517,0.0654665569422646,0.0781197146482228,-0.00127795347412437,0.04004744739769,0.0457193828943176,0.0724286684028476,0.091259281955406,-0.0182958844598489,0.00291411223086234,0.417130170851016,0.210066237510577,0.723670665941428,0.636156944358502,0.615293346223162,0.270151850447437,0.216479754474851,0.430793412191593,0.0452866289931976,0.0746870774004648,-0.0473453496987042,0.236213574021331,0.197576357969935,0.236301744715548,0.050721033902755,0.00280378731767578,0.0148802338327593,0.0202049070508204,0.0274609379178718,-0.0129702131192182,0.028147410213439,0.0396771866760766,0.0632647671710088,0.0344647650409002,0.0134969660852884,-0.0157107176176209,0.00262730225980002,-0.00125903432359886,-0.0473453496987042,0.0201256636051224,-0.0473453496987042,0.0518274635679458,0.0337429320807666,0.0189860075563766,0.0338609943718262,-0.031341591087806,0.0153429629347711,-0.0473453496987042,0.0135757426839279,-0.0473453496987042,0.00840078592547102,-0.0473453496987042,0.0518034788286194,0.0662104659886218,0.0335144031329836,-0.0309766099640126,-0.0178089835116938,-0.0307649516727498,-0.003696115022293,-0.0473453496987042,-0.0283127632291258,-0.0314456228625886,-0.0473453496987042,0.0794185360392228,0.00812199407042388,0.0564652342855566,-0.03658478996286,-0.0146273189535088,-0.0109244541281599,0.0177878252094785,-0.00856674731090538,-0.0145703316448415,-0.0473453496987042,-0.0255820732350014,-0.0324991626669704,-0.0062065425982208,0.0153438021077409,0.0710247967584888,-0.0473453496987042,0.0722953150016622,-0.00985794769469896,-0.0473453496987042,-0.0151900245074733,0.104776589838184,0.0208628621440536,0.0342590682069704,0.0291790111033282,-0.00853279051488794,0.0243659055981854,-0.0473453496987042,-0.0473453496987042,0.150673142575504,0.191265065677623,0.109400878416006,0.144595210218354,-0.0110981041860783,0.0206457362516234,-0.021473722929435,-0.0242588316357452,-0.0293208737192086,-0.00636457534023456,-0.019343080391369,0.0144778851294996,0.221227295984793,-0.00770207680403906,-0.0473453496987042,0.0306968444626218,0.058379931646052,0.0463093731257476,0.0875871167017748,-0.0250403712065778,0.00551367716109554,0.338704820095278,0.0440503258950266,-0.0473453496987042,0.0238866891527012,0.0149433057641921,-0.0146236010878628,-0.0473453496987042,0.0147060244153134,-0.0473453496987042,-0.0171587060504696,0.031621504042223,0.00525114004015504,0.015283515385943,0.0523793889651803,0.187381447029695,0.0377671429500098,0.0490499268654793,0.138967140202726,0.126198144543389,0.101769934544799,0.0649971515281801,0.0733662914315587,0.150745247519215,-0.0162091692632874,0.0595319941083454,0.108579159168411,0.13084648316768,0.410972881907274,0.722528296410062,0.638277560295987,0.00352254541892678,-0.00114255955066958,-0.0274542570518234,0.00620584811517132,-0.0309948452281246,-0.0473453496987042,-0.00983070501677624,-0.0288893356203724,0.0186840479011841,-0.0224228208920094,-0.0141737997296279,0.0245840159955272,-0.0291153582452594,0.00480241852423792,-0.0125623425177032,-0.00392489986122838,-0.0157573407834271,-0.0157271411444877,-0.0364069295509014,-0.0168522167780608,-0.0310896292968316,0.580168953256352,0.500591592767899,-0.0473453496987042,-0.0110676979272266,0.233304040433391,0.238102414858204,0.273596883513827,0.205629097511791,0.454617705308819,0.328416412422542,0.231854166034828,0.237605644761907,0.301856432860258,0.358485629399881,0.348730824981634,0.449029202879853,-0.0171750521711299,0.0064426316804922,0.0182113071902028,-0.0176678482556268,0.00253394724519074,0.0553041886635394,0.00388357419338516,0.0197062449043228,0.0283151374436629,0.0419654751067962,-0.0069073607422429,0.0198631300112191,0.0347247802600788,0.0420520304957198,0.0364103667675244,0.0895034033886878,0.0955426158226632,0.0461790855497384,-0.0229500118185088,0.045788608586364,0.0703171533449938,0.000977984917868768,-0.023756088637289,-0.0277843329020568,-0.0207145727318466,-0.0131497184081354,0.21468541715251,-0.0322730875504284,-0.00972790623912066,0.0112820184921266,0.0998090090001315,0.165012290093123,0.23732627202239,0.190823755871735,0.0583173517990032,0.0877080616241832,0.129243017465471,0.280926941916334,0.101812737977531,0.128791449227795,-0.0473453496987042,0.0890356142022516,-0.0126053093361503,-0.0261795206855822,-0.00426001531800046,-0.0211734600343264,-0.0341596082155646,0.0113152424973187,-0.0048536820451222,0.00278145913970964,-0.0040451266844354,-0.0134141303194492,-0.0153358811238313,-0.00837850893973522,0.0487725445842046,0.0308868297693,-0.018412591691518,0.0010580268490902,0.0107673179129646,0.108638683634611,0.049610940468453,0.109610522146803,-0.0473453496987042,0.0402897735075846,-0.0473453496987042,-0.00839724659625796,0.0203940496139712,-0.0240613185026744,0.100823227769701,0.000116510574456369,0.0158274063529145,-0.0234917457723344,-0.0473453496987042,-0.0473453496987042,-0.00223804849332132,-0.0206297646102966,0.0116893265933092,-0.0042172499313408,0.0160749507994789,0.0222879670403125,-0.0226339461085706,0.00901557032119476,0.139276775679666,-0.0473453496987042,0.00758381651970736,0.928380776517889,0.796755834653854,0.779602722368001,0.960134992699384,1.04446760164677,0.34041558922693,0.00963669544455858,0.0542614632042058,0.0108099561923793,0.00958467282472102,0.0446442010267218,0.0702098326123552,0.072502763707931,0.0391375223107115,0.0382627258713486,0.022851469912077,0.205669746102282,0.0230115040959919,0.203340569960466,0.391651849507558,0.825703092972291,0.686469695566658,0.544943388348183,0.539444476486038,0.472242304561725,0.374087466925464,-0.0473453496987042,-0.00851505470171632,0.0148619157648718,-0.0123372335752676,-0.0164779869562571,-0.0273871541834832,0.0135552401528907,0.00439767701808426,0.0427925609654022,0.032883913689547,0,-0.0033749574704232,-0.0473453496987042,0.042843794496026,-0.0155226399014501,0.0133250684393551,0.0138682395729124,0.0283621910465184,-0.0187748746545386,-0.0154879554315572,0.00744422054861527,-0.0163228508400047,-0.0223140988034586,-0.00259777355873616,-0.00377884916614148,-0.0108539477562606,1.07984458968708,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,0.281998216662464,0.0302435125751662,0.0961707465555978,0.862953909753711,0.0129970934315997,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,-0.0473453496987042,-0.00202111500696332,-0.0473453496987042,0.0268698860123164,-0.0473453496987042,-0.0473453496987042,0.0506303901218727,-0.0216141027641474,-0.0181802625137361,0.0412972201192292,0.242369624699652,0.104238722296488,0.10899274723969,0.147854938254782,0.0790284696621186,0.103044059747291,0.101474689684425,0.170115915097964,0.10753007413421,0.183855631638633,0.167711958911476,0.176863238112468,0.0541583086210063,0.149647927243366,0.245721474586285,0.186619140123827,0.208785822733627,0.192143113598241,0.1889133689509,0.185821326084577,0.0906175822420902,0.157026372863408,0.162951779020615,0.239139052590118,0.146382017002845,0.107506425838123,0.209661721479707,0.150388917976339,0.14595555028309,0.206236327516383,0.18540657947437,0.374590637661696,0.474279388451625,0.357155140407559,0.333823785044792,0.237348470993264,0.320379659757316,0.0907552564692291
 +
|coexpression_dpi_cluster_scores_median=0,1.09747209355138,1.04178665891345,0.866390637918404,0.740998786187662,0.589859523259275,0.567623353081192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127160916153114,0,0,0.273804042237666,0.0896964873768703,0.864306440119346,0.688140107298042,0.579912268713476,0.290060689914576,0.177265236423641,0.480350954341684,0,0,0,0.24356215535852,0.130606276011077,0.347333165174935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0.0341765503451385,0.0980757838043811,0,0.196153902644494,0,0,0,0,0,0,0,0,0.112740163651345,0,0,0,0,0,0,0,0,0.357417438191274,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0285080385791021,0,0,0.0719048733411253,0.114414017937594,0,0,0,0,0,0.0752205997629372,0.0373746436275517,0,0.232554749098995,0.616398783366068,0.691069161146833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.774975232615945,0.493542327080876,0,0,0.012032141900535,0.107685401616995,0.240597476201802,0.0090085626404709,0.384458647382152,0.186025477815419,0.0973736644748266,0.208972125074125,0.286963678417585,0.446791645189773,0.400186673038218,0.413824320725125,0,0.046982063026719,0,0,0,0.0294389011296462,0,0,0.0149099243567768,0.0505333231410966,0,0,0,0,0,0,0.098514232005992,0,0,0,0,0,0,0,0,0,0.0872507993723179,0,0,0,0,0,0.226322072506384,0.171694561849004,0,0.086880916817156,0.177334908740549,0.218916923110154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132301710080237,0,0.0663147875126409,0,0,0,0,0,0,0.0998284739419172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06268425467464,0.702138380967729,0.681215384365158,1.11583032366974,1.27247324686628,0.272872124927955,0,0,0,0,0,0,0,0,0,0,0.291073584836546,0,0.206814654737266,0.360984006323837,0.961631950727299,0.795233412349585,0.62703225519724,0.590270006989707,0.455797556921466,0.216976936336518,0,0,0,0,0,0,0,0,0,0.00232620443549586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20314730468974,0,0,0,0.0568452713245688,0,0.135547100918658,0.971292866813168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295000909831166,0.0826465040380816,0.0861251317045997,0.0871588832444397,0.081359932135904,0,0.0978461107777356,0.178101321237085,0.0750453505157095,0.090366027887858,0.0763037466917402,0.0954509310356106,0,0.0905291472420136,0.141706336142815,0.249055631626858,0.201068050435521,0,0.131923786075207,0.169342968499384,0.0589368614163519,0.091512668362445,0.0854904580217271,0.135404897539632,0.101427320830301,0.0553034373508932,0.193442483447008,0.0486884105045233,0.144268359582519,0.259704250749409,0.0625582350728301,0.24837215409455,0.511655490560328,0.286843980713099,0.155257708002722,0.196967476487388,0.474991293774629,0.0905641158318875
 
|gostat_on_MCL_coexpression=
 
|gostat_on_MCL_coexpression=
 
}}
 
}}

Revision as of 03:59, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:80599248..80599261,+p3@Zbtb7a
Mm9::chr2:160717709..160717735,+p@chr2:160717709..160717735
+
Mm9::chr4:133621781..133621808,+p2@Aim1l
Mm9::chr4:133621812..133621841,+p3@Aim1l
Mm9::chr5:100845572..100845600,-p5@Sec31a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}