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MCL coexpression mm9:158

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:69451220..69451224,+p@chr10:69451220..69451224
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Mm9::chr10:69456037..69456048,+p@chr10:69456037..69456048
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Mm9::chr10:80924467..80924478,-p@chr10:80924467..80924478
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Mm9::chr11:29606996..29607022,+p@chr11:29606996..29607022
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Mm9::chr11:29607397..29607416,+p@chr11:29607397..29607416
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Mm9::chr11:36485553..36485556,-p@chr11:36485553..36485556
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Mm9::chr11:53397396..53397408,+p2@Kif3a
Mm9::chr11:53397464..53397475,+p4@Kif3a
Mm9::chr13:100191678..100191695,-p@chr13:100191678..100191695
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Mm9::chr13:100192810..100192822,-p@chr13:100192810..100192822
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Mm9::chr13:100192830..100192842,-p@chr13:100192830..100192842
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Mm9::chr13:100195086..100195101,-p@chr13:100195086..100195101
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Mm9::chr13:100195175..100195191,-p@chr13:100195175..100195191
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Mm9::chr13:100195373..100195395,-p@chr13:100195373..100195395
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Mm9::chr13:100195782..100195809,-p@chr13:100195782..100195809
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Mm9::chr13:100195867..100195882,-p@chr13:100195867..100195882
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Mm9::chr13:100197274..100197293,-p@chr13:100197274..100197293
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Mm9::chr13:100200036..100200047,-p@chr13:100200036..100200047
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Mm9::chr13:100200167..100200197,-p@chr13:100200167..100200197
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Mm9::chr13:100200258..100200281,-p@chr13:100200258..100200281
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Mm9::chr13:100200283..100200328,-p@chr13:100200283..100200328
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Mm9::chr13:100200341..100200353,-p@chr13:100200341..100200353
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Mm9::chr13:100200361..100200372,-p@chr13:100200361..100200372
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Mm9::chr13:100200413..100200424,-p@chr13:100200413..100200424
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Mm9::chr13:100200464..100200480,-p@chr13:100200464..100200480
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Mm9::chr13:100200990..100201008,-p@chr13:100200990..100201008
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Mm9::chr13:100201387..100201398,-p@chr13:100201387..100201398
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Mm9::chr13:100201556..100201570,-p@chr13:100201556..100201570
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Mm9::chr13:100202969..100202982,-p@chr13:100202969..100202982
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Mm9::chr13:100203199..100203208,-p@chr13:100203199..100203208
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Mm9::chr13:100203414..100203423,-p@chr13:100203414..100203423
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Mm9::chr13:100203454..100203475,-p@chr13:100203454..100203475
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Mm9::chr13:100203551..100203562,-p@chr13:100203551..100203562
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Mm9::chr13:100204050..100204080,-p@chr13:100204050..100204080
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Mm9::chr13:100204171..100204190,-p@chr13:100204171..100204190
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Mm9::chr13:100204205..100204229,-p@chr13:100204205..100204229
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Mm9::chr13:100204236..100204249,-p@chr13:100204236..100204249
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Mm9::chr13:100204256..100204268,-p@chr13:100204256..100204268
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Mm9::chr13:100204272..100204289,-p@chr13:100204272..100204289
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Mm9::chr13:100204293..100204355,-p@chr13:100204293..100204355
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Mm9::chr13:100204365..100204388,-p@chr13:100204365..100204388
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Mm9::chr13:100204396..100204411,-p@chr13:100204396..100204411
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Mm9::chr13:100204419..100204430,-p@chr13:100204419..100204430
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Mm9::chr13:100204435..100204497,-p@chr13:100204435..100204497
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Mm9::chr13:100204502..100204511,-p@chr13:100204502..100204511
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Mm9::chr13:100204516..100204525,-p@chr13:100204516..100204525
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Mm9::chr13:100204526..100204558,-p@chr13:100204526..100204558
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Mm9::chr13:100204563..100204573,-p@chr13:100204563..100204573
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Mm9::chr13:100204591..100204603,-p@chr13:100204591..100204603
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Mm9::chr13:100204609..100204618,-p@chr13:100204609..100204618
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Mm9::chr13:100204847..100204857,-p@chr13:100204847..100204857
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Mm9::chr13:100204910..100204924,-p@chr13:100204910..100204924
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Mm9::chr13:100205091..100205109,-p@chr13:100205091..100205109
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Mm9::chr13:100205218..100205228,-p@chr13:100205218..100205228
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Mm9::chr13:100205349..100205367,-p@chr13:100205349..100205367
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Mm9::chr13:100205403..100205414,-p@chr13:100205403..100205414
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Mm9::chr13:100205486..100205497,-p@chr13:100205486..100205497
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Mm9::chr17:55649560..55649563,+p@chr17:55649560..55649563
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Mm9::chr18:34407302..34407307,+p6@Apc
Mm9::chr1:66370521..66370559,+p@chr1:66370521..66370559
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Mm9::chr2:121726924..121726956,+p@chr2:121726924..121726956
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Mm9::chr2:49556470..49556480,+p@chr2:49556470..49556480
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Mm9::chr3:126645733..126645745,-p@chr3:126645733..126645745
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Mm9::chr6:103461865..103461888,+p@chr6:103461865..103461888
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Mm9::chr6:11991374..11991395,+p@chr6:11991374..11991395
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Mm9::chr7:71898960..71898971,+p@chr7:71898960..71898971
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Mm9::chr9:21822144..21822178,-p@chr9:21822144..21822178
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Mm9::chr9:75415295..75415309,-p@chr9:75415295..75415309
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Mm9::chrX:147090121..147090139,-p3@Tro


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000902cell morphogenesis0.000533580777143217
GO:0032989cellular structure morphogenesis0.000533580777143217
GO:0032990cell part morphogenesis0.00222883300916751
GO:0048858cell projection morphogenesis0.00222883300916751
GO:0030030cell projection organization and biogenesis0.00222883300916751
GO:0009953dorsal/ventral pattern formation0.00250566466836571
GO:0008092cytoskeletal protein binding0.0030975165027156
GO:0009653anatomical structure morphogenesis0.00428165185736983
GO:0009952anterior/posterior pattern formation0.00772921188679527
GO:0032502developmental process0.00772921188679527
GO:0005875microtubule associated complex0.00772921188679527
GO:0019987negative regulation of anti-apoptosis0.0101887099841072
GO:0003002regionalization0.0130979757035639
GO:0045767regulation of anti-apoptosis0.0130979757035639
GO:0007017microtubule-based process0.0152185007709145
GO:0048856anatomical structure development0.0152185007709145
GO:0005874microtubule0.0152185007709145
GO:0048523negative regulation of cellular process0.0152185007709145
GO:0045745positive regulation of G-protein coupled receptor protein signaling pathway0.0152185007709145
GO:0031175neurite development0.0152185007709145
GO:0005856cytoskeleton0.0152185007709145
GO:0005523tropomyosin binding0.0152185007709145
GO:0016328lateral plasma membrane0.0152185007709145
GO:0048519negative regulation of biological process0.0152185007709145
GO:0048666neuron development0.0152185007709145
GO:0007275multicellular organismal development0.0152185007709145
GO:0005519cytoskeletal regulatory protein binding0.0152185007709145
GO:0032501multicellular organismal process0.0152185007709145
GO:0007389pattern specification process0.0152185007709145
GO:0030517negative regulation of axon extension0.0162885436067687
GO:0001578microtubule bundle formation0.0170820489591991
GO:0016043cellular component organization and biogenesis0.0170820489591991
GO:0043229intracellular organelle0.0170820489591991
GO:0043226organelle0.0170820489591991
GO:0050771negative regulation of axonogenesis0.0170820489591991
GO:0030182neuron differentiation0.0170820489591991
GO:0015630microtubule cytoskeleton0.0176965260044852
GO:0048699generation of neurons0.019838071825539
GO:0008013beta-catenin binding0.019838071825539
GO:0030308negative regulation of cell growth0.019838071825539
GO:0042384cilium biogenesis0.0203439537211195
GO:0030516regulation of axon extension0.0203439537211195
GO:0022008neurogenesis0.0211170800405944
GO:0009798axis specification0.0235708048326537
GO:0008277regulation of G-protein coupled receptor protein signaling pathway0.0243993736106459
GO:0045792negative regulation of cell size0.0251915549047828
GO:0050768negative regulation of neurogenesis0.0254090532441701
GO:0030176integral to endoplasmic reticulum membrane0.0254090532441701
GO:0048675axon extension0.0280400716874513
GO:0031227intrinsic to endoplasmic reticulum membrane0.0280400716874513
GO:0007270nerve-nerve synaptic transmission0.028681567037318
GO:0045926negative regulation of growth0.0288952341925234
GO:0007010cytoskeleton organization and biogenesis0.0288952341925234
GO:0043232intracellular non-membrane-bound organelle0.0288952341925234
GO:0043228non-membrane-bound organelle0.0288952341925234
GO:0005737cytoplasm0.0309652219385251
GO:0044424intracellular part0.0309652219385251
GO:0050794regulation of cellular process0.0309652219385251
GO:0050770regulation of axonogenesis0.0309652219385251
GO:0007368determination of left/right symmetry0.0337064694612772
GO:0044430cytoskeletal part0.0337064694612772
GO:0009799determination of symmetry0.0337064694612772
GO:0009855determination of bilateral symmetry0.0337064694612772
GO:0048731system development0.0337064694612772
GO:0005622intracellular0.0337064694612772
GO:0016358dendrite development0.0354045852839652
GO:0005871kinesin complex0.0354045852839652
GO:0050789regulation of biological process0.0396347683305164
GO:0050767regulation of neurogenesis0.0396347683305164
GO:0008017microtubule binding0.0399312795533295
GO:0030031cell projection biogenesis0.0405075994997916
GO:0007399nervous system development0.0405075994997916
GO:0031301integral to organelle membrane0.0415970681718946
GO:0030334regulation of cell migration0.042664658739414
GO:0031300intrinsic to organelle membrane0.0439205091015996
GO:0015631tubulin binding0.0439205091015996
GO:0043025cell soma0.0449141803985401
GO:0051270regulation of cell motility0.0458815245142755
GO:0040012regulation of locomotion0.0474634120728747
GO:0065007biological regulation0.0474634120728747
GO:0000226microtubule cytoskeleton organization and biogenesis0.0474634120728747
GO:0003777microtubule motor activity0.0474634120728747
GO:0009967positive regulation of signal transduction0.0474634120728747
GO:0007611learning and/or memory0.0490427659683969
GO:0005789endoplasmic reticulum membrane0.0498775988954077



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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