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MCL coexpression mm9:1653

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Phase1 CAGE Peaks

 Short description
Mm9::chr13:6597624..6597628,-p2@Pfkp
Mm9::chr15:102767247..102767265,+p1@Hoxc12
Mm9::chr15:102767273..102767285,+p2@Hoxc12
Mm9::chr2:74530108..74530131,+p@chr2:74530108..74530131
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Mm9::chr5:77527885..77527900,+p@chr5:77527885..77527900
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007389pattern specification process0.0152826463423504
GO:00059456-phosphofructokinase complex0.0152826463423504
GO:0043234protein complex0.0152826463423504
GO:00038726-phosphofructokinase activity0.0152826463423504
GO:0032991macromolecular complex0.0188334571863035
GO:0008443phosphofructokinase activity0.0188334571863035
GO:0005667transcription factor complex0.0188334571863035
GO:0043565sequence-specific DNA binding0.0188334571863035
GO:0009887organ morphogenesis0.0222044061746657
GO:0044451nucleoplasm part0.0222044061746657
GO:0005654nucleoplasm0.0222044061746657
GO:0031981nuclear lumen0.0286556891095618
GO:0031974membrane-enclosed lumen0.0295059949669166
GO:0043233organelle lumen0.0295059949669166
GO:0019200carbohydrate kinase activity0.0295059949669166
GO:0003700transcription factor activity0.0328018454917249
GO:0006096glycolysis0.0384670257346693
GO:0044428nuclear part0.0384670257346693
GO:0006007glucose catabolic process0.0384670257346693
GO:0046365monosaccharide catabolic process0.0384670257346693
GO:0019320hexose catabolic process0.0384670257346693
GO:0046164alcohol catabolic process0.0387905489148238
GO:0009653anatomical structure morphogenesis0.0418846667416595
GO:0044275cellular carbohydrate catabolic process0.0418846667416595
GO:0016052carbohydrate catabolic process0.0438502336937198



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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