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MCL coexpression mm9:186

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:45354443..45354446,+p@chr10:45354443..45354446
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Mm9::chr10:57237043..57237056,-p@chr10:57237043..57237056
-
Mm9::chr10:69013904..69013929,+p@chr10:69013904..69013929
+
Mm9::chr11:75546539..75546545,+p2@Ywhae
Mm9::chr11:75565449..75565509,+p4@Ywhae
Mm9::chr11:94158277..94158297,-p@chr11:94158277..94158297
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Mm9::chr12:110798500..110798511,+p@chr12:110798500..110798511
+
Mm9::chr12:113029320..113029385,+p@chr12:113029320..113029385
+
Mm9::chr13:110269010..110269038,+p@chr13:110269010..110269038
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Mm9::chr13:45872860..45872895,-p@chr13:45872860..45872895
-
Mm9::chr13:45872929..45872954,-p@chr13:45872929..45872954
-
Mm9::chr15:103043667..103043683,-p@chr15:103043667..103043683
-
Mm9::chr15:12066324..12066343,+p@chr15:12066324..12066343
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Mm9::chr15:90811421..90811433,-p@chr15:90811421..90811433
-
Mm9::chr16:17044632..17044652,+p@chr16:17044632..17044652
+
Mm9::chr16:21650274..21650286,-p@chr16:21650274..21650286
-
Mm9::chr16:94646690..94646714,+p3@Ttc3
Mm9::chr16:94647791..94647804,+p@chr16:94647791..94647804
+
Mm9::chr17:87837859..87837876,-p@chr17:87837859..87837876
-
Mm9::chr18:36447552..36447564,+p@chr18:36447552..36447564
+
Mm9::chr18:36447599..36447612,+p@chr18:36447599..36447612
+
Mm9::chr18:36447720..36447733,+p@chr18:36447720..36447733
+
Mm9::chr18:36450769..36450781,+p@chr18:36450769..36450781
+
Mm9::chr18:36452278..36452282,+p@chr18:36452278..36452282
+
Mm9::chr18:6220867..6220879,-p@chr18:6220867..6220879
-
Mm9::chr19:26845416..26845446,+p@chr19:26845416..26845446
+
Mm9::chr19:57733451..57733459,+p@chr19:57733451..57733459
+
Mm9::chr1:138177122..138177139,-p@chr1:138177122..138177139
-
Mm9::chr1:138177160..138177178,-p@chr1:138177160..138177178
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Mm9::chr1:34240952..34240957,+p@chr1:34240952..34240957
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Mm9::chr1:34243714..34243726,+p@chr1:34243714..34243726
+
Mm9::chr1:34254084..34254099,+p@chr1:34254084..34254099
+
Mm9::chr2:102240613..102240626,-p4@Trim44
Mm9::chr2:119531323..119531339,+p@chr2:119531323..119531339
+
Mm9::chr2:121760559..121760578,+p@chr2:121760559..121760578
+
Mm9::chr2:128622653..128622671,+p@chr2:128622653..128622671
+
Mm9::chr2:37502719..37502749,-p4@Strbp
Mm9::chr2:6571993..6572001,-p@chr2:6571993..6572001
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Mm9::chr2:80421045..80421056,-p6@Nckap1
Mm9::chr3:157199510..157199521,+p@chr3:157199510..157199521
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Mm9::chr3:69190318..69190324,+p@chr3:69190318..69190324
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Mm9::chr4:138012723..138012734,+p@chr4:138012723..138012734
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Mm9::chr4:138012789..138012800,+p@chr4:138012789..138012800
+
Mm9::chr5:124071855..124071859,-p@chr5:124071855..124071859
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Mm9::chr6:135164336..135164348,+p@chr6:135164336..135164348
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Mm9::chr8:39422826..39422829,-p@chr8:39422826..39422829
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Mm9::chr8:70217412..70217415,-p@chr8:70217412..70217415
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Mm9::chr9:25105387..25105411,+p@chr9:25105387..25105411
+
Mm9::chr9:25105412..25105431,+p@chr9:25105412..25105431
+
Mm9::chr9:25109050..25109063,+p@chr9:25109050..25109063
+
Mm9::chr9:70471498..70471513,-p@chr9:70471498..70471513
-
Mm9::chrX:103051247..103051261,-p@chrX:103051247..103051261
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Mm9::chrX:103051283..103051306,-p@chrX:103051283..103051306
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Mm9::chrX:132805898..132805933,+p@chrX:132805898..132805933
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019858cytosine metabolic process0.0346518380540185
GO:0045175basal protein localization0.0346518380540185
GO:0030950establishment and/or maintenance of actin cytoskeleton polarity0.0346518380540185
GO:0032879regulation of localization0.0346518380540185
GO:0030952establishment and/or maintenance of cytoskeleton polarity0.0346518380540185
GO:0032880regulation of protein localization0.0346518380540185
GO:0000228nuclear chromosome0.0390585294056866
GO:0007509mesoderm migration0.0390585294056866
GO:0008078mesodermal cell migration0.0390585294056866
GO:0007354zygotic determination of anterior/posterior axis, embryo0.0390585294056866
GO:0005123death receptor binding0.0390585294056866
GO:0007638mechanosensory behavior0.0390585294056866
GO:0048570notochord morphogenesis0.0390585294056866
GO:0048617embryonic foregut morphogenesis0.0390585294056866
GO:0010172embryonic body morphogenesis0.0390585294056866
GO:0004386helicase activity0.0390585294056866
GO:0032502developmental process0.0390585294056866
GO:0031575G1/S transition checkpoint0.0390585294056866
GO:0007440foregut morphogenesis0.0390585294056866
GO:0000578embryonic axis specification0.0390585294056866
GO:0008595determination of anterior/posterior axis, embryo0.0390585294056866
GO:0010171body morphogenesis0.0390585294056866
GO:0007351tripartite regional subdivision0.0390585294056866
GO:0005662DNA replication factor A complex0.0390585294056866
GO:0007350blastoderm segmentation0.0390585294056866
GO:0008625induction of apoptosis via death domain receptors0.0390585294056866
GO:0048611embryonic ectodermal gut development0.0390585294056866
GO:0016514SWI/SNF complex0.0390585294056866
GO:0001784phosphotyrosine binding0.0390585294056866
GO:0048613embryonic ectodermal gut morphogenesis0.0390585294056866
GO:0046332SMAD binding0.0390585294056866
GO:0030903notochord development0.0390585294056866
GO:0045176apical protein localization0.0390585294056866
GO:0006206pyrimidine base metabolic process0.0390585294056866
GO:0042074cell migration involved in gastrulation0.0390585294056866
GO:0045309protein phosphorylated amino acid binding0.0390585294056866
GO:0050821protein stabilization0.0390585294056866
GO:0048558embryonic gut morphogenesis0.0390585294056866
GO:0007399nervous system development0.0390585294056866
GO:0048340paraxial mesoderm morphogenesis0.0390585294056866
GO:0043601nuclear replisome0.0390585294056866
GO:0031647regulation of protein stability0.0390585294056866
GO:0018209peptidyl-serine modification0.0390585294056866
GO:0030894replisome0.0390585294056866
GO:0048557embryonic digestive tract morphogenesis0.0390585294056866
GO:0018105peptidyl-serine phosphorylation0.0390585294056866
GO:0008105asymmetric protein localization0.0390585294056866
GO:0007275multicellular organismal development0.0390585294056866
GO:0007439ectodermal gut development0.0398844424464048
GO:0043596nuclear replication fork0.0398844424464048
GO:0043330response to exogenous dsRNA0.0398844424464048
GO:0048567ectodermal gut morphogenesis0.0398844424464048
GO:0048547gut morphogenesis0.0408177928673203
GO:0009948anterior/posterior axis specification0.0408177928673203
GO:0014069postsynaptic density0.0408177928673203
GO:0003727single-stranded RNA binding0.0408177928673203
GO:0032496response to lipopolysaccharide0.0408177928673203
GO:0031663lipopolysaccharide-mediated signaling pathway0.0408177928673203
GO:0007093mitotic cell cycle checkpoint0.0408177928673203
GO:0048546digestive tract morphogenesis0.0408177928673203
GO:0048339paraxial mesoderm development0.0408177928673203
GO:0035050embryonic heart tube development0.0408177928673203
GO:0048566embryonic gut development0.0408177928673203
GO:0043331response to dsRNA0.0408177928673203
GO:0051219phosphoprotein binding0.0408177928673203
GO:0004707MAP kinase activity0.0408177928673203
GO:0006974response to DNA damage stimulus0.0418893485611573
GO:0043232intracellular non-membrane-bound organelle0.0428879313115443
GO:0043228non-membrane-bound organelle0.0428879313115443
GO:0030032lamellipodium biogenesis0.0437567641705426
GO:0009112nucleobase metabolic process0.0437567641705426
GO:0009719response to endogenous stimulus0.045387146081772
GO:0009798axis specification0.0458762410382874
GO:0007492endoderm development0.0458762410382874
GO:0002237response to molecule of bacterial origin0.0458762410382874
GO:0009612response to mechanical stimulus0.0458762410382874
GO:0005622intracellular0.0458762410382874
GO:0048565gut development0.0477566132305145
GO:0048523negative regulation of cellular process0.0491360628749696
GO:0008624induction of apoptosis by extracellular signals0.0491360628749696
GO:0016585chromatin remodeling complex0.0498390520962728
GO:0004860protein kinase inhibitor activity0.0498390520962728
GO:0003697single-stranded DNA binding0.0498390520962728



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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