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MCL coexpression mm9:188: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004872!2.60e-08!33;UBERON:0004535!4.69e-08!23;UBERON:0001009!4.69e-08!23
|tfbs_overrepresentation_for_novel_motifs=0.347515,0.00119686,0.053123,0.717989,0.553189,0.103447,0.71271,0.495233,0.378482,0.0259305,0.140166,0.679497,0.0668406,0.0514508,0.133764,0,0.134663,1.63726,0.103315,0.250096,0.397525,0.573721,0.190624,0.110457,0.308992,0.0608168,0.0905195,0.11917,0.00456243,0.319754,0.0256063,0.19303,0.0413459,0.197257,0.00296067,0.0488131,0.0104231,0.0428501,0.247719,0.445379,0.35134,0.505541,1.11424,1.51352,0.0490175,0.4159,0.0954571,0.131757,0.829977,0.179865,0.125531,0.0708006,0.410008,0.288249,1.47692,0.0537992,0.807842,0.156773,3.80173,0.435351,0.180771,0.0744969,0.0917102,0.119797,0.0575738,0.140979,0.405492,0.706634,0.177958,0.575249,0.00862653,0.236035,0.000103234,0.869591,0.0129941,0.105,1.79049,0.0903973,3.76896,2.023,0.239467,0.144035,0.0739256,0.202258,0.243226,5.00805e-07,5.30246,0.786284,0.322541,0.856591,0.46234,0.246609,1.10249,2.14956,0.00092382,0.31827,0.482949,0.202807,0.316863,0.781749,4.07672,1.07022,0.275794,0.125837,0.78885,0.0266301,0.476983,1.71801,0.0404797,0.00706342,0.332653,0.27706,0.111439,0.0364146,3.04772,0.753907,0.0243429,0.0220209,0.135356,3.06583,0.329775,0.71778,2.92595,0.626377,0.513779,0.172714,0.418331,0.196782,0.404277,0.235338,0.263843,1.02338,0.38082,0.212418,0.486259,9.93689,0.0718507,0.813924,0.445396,1.20935,0.826797,0.40927,0.0658619,0.578872,0.121984,0.272354,0.0968691,1.17081,2.13781,0.368862,0.331424,5.07356e-06,0.28938,1.83953,0.803852,0.350203,1.36442,0.0210691,0.0138714,0.0154492,0.453227,0.242646,3.7962,0.0129098,0.382272,0.782539,0.470448,1.04611,1.66723
}}

Latest revision as of 14:51, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120220366..120220372,-p@chr10:120220366..120220372
-
Mm9::chr10:90559439..90559442,+p@chr10:90559439..90559442
+
Mm9::chr13:113836565..113836630,-p1@Gpx8
Mm9::chr13:60277410..60277414,-p@chr13:60277410..60277414
-
Mm9::chr14:73542297..73542371,+p1@Rcbtb2
Mm9::chr16:37829210..37829222,+p@chr16:37829210..37829222
+
Mm9::chr18:52688420..52688445,+p@chr18:52688420..52688445
+
Mm9::chr5:138048130..138048149,-p@chr5:138048130..138048149
-
Mm9::chr5:138051653..138051680,-p@chr5:138051653..138051680
-
Mm9::chr6:4490789..4490832,-p@chr6:4490789..4490832
-
Mm9::chr7:16535376..16535392,-p@chr7:16535376..16535392
-
Mm9::chr7:16535437..16535441,-p@chr7:16535437..16535441
-
Mm9::chrX:70728964..70728983,+p1@Bgn
Mm9::chrX:70736102..70736126,+p@chrX:70736102..70736126
+
Mm9::chrX:70736188..70736214,+p@chrX:70736188..70736214
+
Mm9::chrX:70736243..70736280,+p@chrX:70736243..70736280
+
Mm9::chrX:70736653..70736704,+p@chrX:70736653..70736704
+
Mm9::chrX:70737304..70737343,+p3@Bgn
Mm9::chrX:70737350..70737361,+p6@Bgn
Mm9::chrX:70737382..70737400,+p2@Bgn
Mm9::chrX:70737389..70737402,-p@chrX:70737389..70737402
-
Mm9::chrX:70737420..70737466,-p@chrX:70737420..70737466
-
Mm9::chrX:70737460..70737474,+p5@Bgn
Mm9::chrX:70738065..70738077,+p@chrX:70738065..70738077
+
Mm9::chrX:70738079..70738136,+p@chrX:70738079..70738136
+
Mm9::chrX:70738143..70738151,+p@chrX:70738143..70738151
+
Mm9::chrX:70738309..70738321,+p@chrX:70738309..70738321
+
Mm9::chrX:70738349..70738375,+p@chrX:70738349..70738375
+
Mm9::chrX:70738533..70738553,+p@chrX:70738533..70738553
+
Mm9::chrX:70738575..70738604,+p@chrX:70738575..70738604
+
Mm9::chrX:70738619..70738654,+p@chrX:70738619..70738654
+
Mm9::chrX:70739937..70739948,+p@chrX:70739937..70739948
+
Mm9::chrX:70739957..70740016,-p@chrX:70739957..70740016
-
Mm9::chrX:70739970..70739981,+p@chrX:70739970..70739981
+
Mm9::chrX:70739994..70740005,+p@chrX:70739994..70740005
+
Mm9::chrX:70740011..70740030,+p@chrX:70740011..70740030
+
Mm9::chrX:70740062..70740075,+p@chrX:70740062..70740075
+
Mm9::chrX:70740063..70740088,-p@chrX:70740063..70740088
-
Mm9::chrX:70740134..70740149,+p@chrX:70740134..70740149
+
Mm9::chrX:70740154..70740173,+p@chrX:70740154..70740173
+
Mm9::chrX:70740195..70740217,-p@chrX:70740195..70740217
-
Mm9::chrX:70740219..70740255,+p@chrX:70740219..70740255
+
Mm9::chrX:70740262..70740302,+p@chrX:70740262..70740302
+
Mm9::chrX:70740280..70740375,-p@chrX:70740280..70740375
-
Mm9::chrX:70740401..70740414,+p@chrX:70740401..70740414
+
Mm9::chrX:70740406..70740437,-p@chrX:70740406..70740437
-
Mm9::chrX:70740415..70740448,+p@chrX:70740415..70740448
+
Mm9::chrX:70740451..70740471,+p@chrX:70740451..70740471
+
Mm9::chrX:70740484..70740642,+p@chrX:70740484..70740642
+
Mm9::chrX:70740538..70740633,-p@chrX:70740538..70740633
-
Mm9::chrX:70740648..70740671,+p@chrX:70740648..70740671
+
Mm9::chrX:70740672..70740741,+p@chrX:70740672..70740741
+
Mm9::chrX:70740923..70740934,+p@chrX:70740923..70740934
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm2.60e-0833
cardiovascular system4.69e-0823
circulatory system4.69e-0823


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.90838e-05
MA0004.10.021389
MA0006.10.0168613
MA0007.10.0186538
MA0009.11.13637
MA0014.13.006e-05
MA0017.10.165262
MA0019.10.107112
MA0024.10.182403
MA0025.10.377279
MA0027.11.70006
MA0028.10.0194532
MA0029.10.169433
MA0030.12.24616
MA0031.10.906876
MA0038.10.0607888
MA0040.10.217786
MA0041.10.00992687
MA0042.10.0437415
MA0043.10.275083
MA0046.10.233218
MA0048.10.0103488
MA0050.10.291468
MA0051.10.064015
MA0052.10.223053
MA0055.10.00573031
MA0056.10
MA0057.10.000584154
MA0058.10.00782199
MA0059.10.128714
MA0060.10.000553922
MA0061.10.404643
MA0063.10
MA0066.10.456686
MA0067.10.467135
MA0068.10.000116419
MA0069.10.223276
MA0070.12.56254
MA0071.10.290147
MA0072.10.211463
MA0073.14.43335
MA0074.10.0453874
MA0076.10.00544409
MA0077.14.06392
MA0078.10.0767113
MA0081.10.310898
MA0083.10.274521
MA0084.12.98493
MA0087.10.244601
MA0088.10.353696
MA0089.10
MA0090.10.0154901
MA0091.11.98553
MA0092.10.608637
MA0093.10.00368009
MA0095.10
MA0098.10
MA0100.10.1623
MA0101.10.13842
MA0103.10.771877
MA0105.10.564266
MA0106.10.0798764
MA0107.10.743423
MA0108.20.118274
MA0109.10
MA0111.10.0804562
MA0113.10.242275
MA0114.11.0586
MA0115.10.277068
MA0116.12.21463
MA0117.10.254481
MA0119.10.745153
MA0122.12.08926
MA0124.10.423432
MA0125.10.364629
MA0130.10
MA0131.10.104957
MA0132.10
MA0133.10
MA0135.10.301301
MA0136.10.0516143
MA0139.10.0625056
MA0140.10.66113
MA0141.10.00634511
MA0142.10.444528
MA0143.11.40451
MA0144.10.146889
MA0145.10.093395
MA0146.10.00190339
MA0147.10.084022
MA0148.10.256786
MA0149.10.0107257
MA0062.20.0308773
MA0035.20.166483
MA0039.21.42739e-11
MA0138.20.679738
MA0002.20.0655546
MA0137.20.209231
MA0104.20.0818488
MA0047.20.0605166
MA0112.20.146967
MA0065.211.3587
MA0150.10.211958
MA0151.10
MA0152.10.218626
MA0153.10.313537
MA0154.10.0482175
MA0155.10.399683
MA0156.10.00537945
MA0157.10.79897
MA0158.10
MA0159.10.492679
MA0160.11.14438
MA0161.10
MA0162.11.65555e-07
MA0163.10.0322718
MA0164.10.427482
MA0080.20.0256695
MA0018.20.0549366
MA0099.20.0983336
MA0079.21.24363e-07
MA0102.20.804421
MA0258.10.216565
MA0259.10.00112922
MA0442.10
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