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MCL coexpression mm9:2250: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0.650373583925615,0.639425952642372,0,0.088175261017747,0.320048601435619,0.311314786856592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496165587242892,0.623815306693838,0.567835150753289,0.458923735374662,0.539436015742075,0.192714804809031,0,0.625586785886274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228480260119283,0,0,0.0896198885454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0843266682486015,0,0,0,0,0.139241831090348,0.0424914383301275,0.145594936782439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0244872863598586,0,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.988885338806317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0.650373583925615,0.639425952642372,0,0.088175261017747,0.320048601435619,0.311314786856592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496165587242892,0.623815306693838,0.567835150753289,0.458923735374662,0.539436015742075,0.192714804809031,0,0.625586785886274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228480260119283,0,0,0.0896198885454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0843266682486015,0,0,0,0,0.139241831090348,0.0424914383301275,0.145594936782439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0244872863598586,0,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.988885338806317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000239!4.12e-18!6;CL:0000677!4.12e-18!6;CL:0000212!4.12e-18!6;CL:0000584!4.12e-18!6;CL:0000075!1.66e-15!7;CL:0000627!6.61e-14!3;CL:0000682!6.61e-14!3;CL:0002563!5.05e-12!9;CL:0002251!5.05e-12!9;CL:0000066!3.32e-10!25;CL:0002076!3.98e-07!15
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!2.59e-24!31;UBERON:0000344!1.97e-22!15;UBERON:0005409!7.54e-18!47;UBERON:0001242!9.53e-16!13;UBERON:0000060!9.53e-16!13;UBERON:0001262!9.53e-16!13;UBERON:0004786!9.53e-16!13;UBERON:0004923!1.57e-13!24;UBERON:0003350!5.05e-12!9;UBERON:0004808!5.05e-12!9;UBERON:0001277!5.05e-12!9;UBERON:0002108!3.31e-10!4;UBERON:0001962!6.74e-10!2;UBERON:0001961!6.74e-10!2;UBERON:0001744!6.74e-10!2;UBERON:0000485!8.41e-10!11;UBERON:0001155!3.24e-09!2;UBERON:0000059!3.24e-09!2;UBERON:0001007!7.48e-08!116;UBERON:0001555!7.48e-08!116;UBERON:0007026!7.48e-08!116;UBERON:0004119!1.14e-07!118;UBERON:0000925!1.14e-07!118;UBERON:0006595!1.14e-07!118;UBERON:0002465!7.27e-07!3;UBERON:0000331!9.45e-07!3;UBERON:0002116!9.45e-07!3;UBERON:0001204!9.45e-07!3;UBERON:0001168!9.45e-07!3
}}
}}

Revision as of 18:10, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:10773869..10773884,+p@chr19:10773869..10773884
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Mm9::chr19:18805102..18805107,+p@chr19:18805102..18805107
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Mm9::chr19:18805120..18805139,+p@chr19:18805120..18805139
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Mm9::chr19:18805148..18805179,+p@chr19:18805148..18805179
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine2.59e-2431
mucosa1.97e-2215
gastrointestinal system7.54e-1847
intestinal mucosa9.53e-1613
anatomical wall9.53e-1613
wall of intestine9.53e-1613
gastrointestinal system mucosa9.53e-1613
organ component layer1.57e-1324
epithelium of mucosa5.05e-129
gastrointestinal system epithelium5.05e-129
intestinal epithelium5.05e-129
small intestine3.31e-104
gut-associated lymphoid tissue6.74e-102
mucosa-associated lymphoid tissue6.74e-102
lymphoid tissue6.74e-102
simple columnar epithelium8.41e-1011
colon3.24e-092
large intestine3.24e-092
digestive system7.48e-08116
digestive tract7.48e-08116
primitive gut7.48e-08116
endoderm-derived structure1.14e-07118
endoderm1.14e-07118
presumptive endoderm1.14e-07118
lymphoid system7.27e-073
ileal mucosa9.45e-073
ileum9.45e-073
mucosa of small intestine9.45e-073
wall of small intestine9.45e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}