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MCL coexpression mm9:2313: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!9.73e-42!31;UBERON:0000344!1.25e-40!15;UBERON:0001242!1.70e-34!13;UBERON:0000060!1.70e-34!13;UBERON:0001262!1.70e-34!13;UBERON:0004786!1.70e-34!13;UBERON:0005409!4.98e-29!47;UBERON:0004923!2.45e-24!24;UBERON:0003350!2.99e-23!9;UBERON:0004808!2.99e-23!9;UBERON:0001277!2.99e-23!9;UBERON:0000485!8.49e-19!11;UBERON:0002108!2.63e-12!4;UBERON:0001007!1.33e-11!116;UBERON:0001555!1.33e-11!116;UBERON:0007026!1.33e-11!116;UBERON:0004119!2.50e-11!118;UBERON:0000925!2.50e-11!118;UBERON:0006595!2.50e-11!118;UBERON:0000331!1.62e-09!3;UBERON:0002116!1.62e-09!3;UBERON:0001204!1.62e-09!3;UBERON:0001168!1.62e-09!3;UBERON:0004921!1.94e-09!114;UBERON:0001962!1.35e-07!2;UBERON:0001961!1.35e-07!2;UBERON:0001744!1.35e-07!2
|ontology_enrichment_uberon=UBERON:0000160!9.73e-42!31;UBERON:0000344!1.25e-40!15;UBERON:0001242!1.70e-34!13;UBERON:0000060!1.70e-34!13;UBERON:0001262!1.70e-34!13;UBERON:0004786!1.70e-34!13;UBERON:0005409!4.98e-29!47;UBERON:0004923!2.45e-24!24;UBERON:0003350!2.99e-23!9;UBERON:0004808!2.99e-23!9;UBERON:0001277!2.99e-23!9;UBERON:0000485!8.49e-19!11;UBERON:0002108!2.63e-12!4;UBERON:0001007!1.33e-11!116;UBERON:0001555!1.33e-11!116;UBERON:0007026!1.33e-11!116;UBERON:0004119!2.50e-11!118;UBERON:0000925!2.50e-11!118;UBERON:0006595!2.50e-11!118;UBERON:0000331!1.62e-09!3;UBERON:0002116!1.62e-09!3;UBERON:0001204!1.62e-09!3;UBERON:0001168!1.62e-09!3;UBERON:0004921!1.94e-09!114;UBERON:0001962!1.35e-07!2;UBERON:0001961!1.35e-07!2;UBERON:0001744!1.35e-07!2
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.162942,0.755749,1.85721,0.37041,0.81685,1.2551,0,1.02248,0.473993,0.352304,0.24402,1.39891,0.197567,0.815872,0.481455,0.620553,0.846564,0.342316,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,0.089443,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,1.04032,0.504971,0.0986756,0.675898,0.938241,0.744678,0.949442,0.539131,1.0041,0.875451,0.771943,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,0.362446,1.20828,0.11855,0.129654,0.290918,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,0.731844,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,1.15537,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,1.93913,0.459159,0.788782,0.0824127
}}
}}

Revision as of 21:13, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:58810538..58810543,+p@chr1:58810538..58810543
+
Mm9::chr5:66382473..66382485,-p@chr5:66382473..66382485
-
Mm9::chr6:113589357..113589371,-p@chr6:113589357..113589371
-
Mm9::chr9:60181993..60182002,+p@chr9:60181993..60182002
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine9.73e-4231
mucosa1.25e-4015
intestinal mucosa1.70e-3413
anatomical wall1.70e-3413
wall of intestine1.70e-3413
gastrointestinal system mucosa1.70e-3413
gastrointestinal system4.98e-2947
organ component layer2.45e-2424
epithelium of mucosa2.99e-239
gastrointestinal system epithelium2.99e-239
intestinal epithelium2.99e-239
simple columnar epithelium8.49e-1911
small intestine2.63e-124
digestive system1.33e-11116
digestive tract1.33e-11116
primitive gut1.33e-11116
endoderm-derived structure2.50e-11118
endoderm2.50e-11118
presumptive endoderm2.50e-11118
ileal mucosa1.62e-093
ileum1.62e-093
mucosa of small intestine1.62e-093
wall of small intestine1.62e-093
subdivision of digestive tract1.94e-09114
gut-associated lymphoid tissue1.35e-072
mucosa-associated lymphoid tissue1.35e-072
lymphoid tissue1.35e-072


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}